Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0779

Experiment: MoLS4 with L-Cysteine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntatpA and atpH are separated by 4 nucleotidesatpH and atpF2 overlap by 4 nucleotidesatpF2 and atpF1 are separated by 72 nucleotides DVU0777: atpA - ATP synthase, F1 alpha subunit (TIGR), at 867,128 to 868,636 atpA DVU0778: atpH - ATP synthase, F1 delta subunit (TIGR), at 868,641 to 869,192 atpH DVU0779: atpF2 - ATP synthase F0, B subunit, putative (TIGR), at 869,189 to 869,719 atpF2 DVU0780: atpF1 - ATP synthase F0, B subunit, putative (TIGR), at 869,792 to 870,187 atpF1 Position (kb) 869 870Strain fitness (log2 ratio) -1 0 1 2 3at 868.646 kb on - strandat 868.646 kb on - strandat 868.646 kb on - strandat 869.795 kb on + strandat 870.577 kb on - strandat 870.622 kb on - strandat 870.648 kb on - strandat 870.649 kb on + strandat 870.657 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine as nutrient 10mM
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868,646 - +0.6
868,646 - +2.8
868,646 - -0.5
869,795 + +2.8
870,577 - +2.1
870,622 - +1.2
870,648 - +0.3
870,649 + -1.6
870,657 - -1.5

Or see this region's nucleotide sequence