Experiment: MoLS4 with L-Cysteine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lepB and dctM are separated by 449 nucleotides dctM and DVU0706 overlap by 4 nucleotides DVU0706 and dctP are separated by 84 nucleotides
DVU0704: lepB - signal peptidase I (TIGR), at 784,042 to 784,641
lepB
DVU0705: dctM - TRAP dicarboxylate transporter, putative (TIGR), at 785,091 to 786,374
dctM
DVU0706: DVU0706 - membrane protein, putative (TIGR), at 786,371 to 786,841
DVU0706
DVU0707: dctP - TRAP dicarboxylate family transporter (TIGR), at 786,926 to 787,942
dctP
Position (kb) 785
786
787 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 784.800 kb on - strand at 784.945 kb on + strand at 784.945 kb on + strand at 784.945 kb on + strand at 784.975 kb on + strand at 784.983 kb on - strand at 784.983 kb on - strand at 785.009 kb on - strand at 785.019 kb on - strand at 785.060 kb on + strand at 785.174 kb on + strand at 785.204 kb on + strand at 785.212 kb on - strand at 785.217 kb on - strand at 785.270 kb on + strand, within dctM at 785.273 kb on - strand, within dctM at 785.359 kb on + strand, within dctM at 785.576 kb on + strand, within dctM at 785.740 kb on - strand, within dctM at 785.825 kb on + strand, within dctM at 785.852 kb on - strand, within dctM at 785.904 kb on + strand, within dctM at 785.909 kb on + strand, within dctM at 785.980 kb on + strand, within dctM at 786.081 kb on + strand, within dctM at 786.107 kb on - strand, within dctM at 786.135 kb on + strand, within dctM at 786.171 kb on + strand, within dctM at 786.171 kb on + strand, within dctM at 786.318 kb on - strand at 786.336 kb on - strand at 786.378 kb on - strand at 786.398 kb on + strand at 786.406 kb on - strand at 786.450 kb on + strand, within DVU0706 at 786.566 kb on - strand, within DVU0706 at 786.733 kb on - strand, within DVU0706 at 786.780 kb on + strand, within DVU0706 at 786.780 kb on + strand, within DVU0706 at 786.788 kb on - strand, within DVU0706 at 786.788 kb on - strand, within DVU0706 at 786.972 kb on + strand at 787.026 kb on + strand at 787.034 kb on - strand, within dctP at 787.049 kb on - strand, within dctP at 787.099 kb on + strand, within dctP at 787.205 kb on - strand, within dctP at 787.212 kb on - strand, within dctP at 787.226 kb on - strand, within dctP at 787.226 kb on - strand, within dctP at 787.244 kb on + strand, within dctP at 787.285 kb on - strand, within dctP at 787.310 kb on - strand, within dctP at 787.310 kb on - strand, within dctP
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine as nutrient 10mM remove 784,800 - +0.6 784,945 + +1.0 784,945 + +2.2 784,945 + +0.0 784,975 + +1.5 784,983 - -1.8 784,983 - +0.9 785,009 - -0.4 785,019 - -0.5 785,060 + -0.9 785,174 + +0.4 785,204 + +2.0 785,212 - +0.1 785,217 - -1.0 785,270 + dctM DVU0705 0.14 +0.2 785,273 - dctM DVU0705 0.14 -1.0 785,359 + dctM DVU0705 0.21 +0.7 785,576 + dctM DVU0705 0.38 -1.2 785,740 - dctM DVU0705 0.51 -1.6 785,825 + dctM DVU0705 0.57 -1.5 785,852 - dctM DVU0705 0.59 +0.7 785,904 + dctM DVU0705 0.63 -1.6 785,909 + dctM DVU0705 0.64 -0.9 785,980 + dctM DVU0705 0.69 +0.8 786,081 + dctM DVU0705 0.77 -2.8 786,107 - dctM DVU0705 0.79 -1.1 786,135 + dctM DVU0705 0.81 -1.3 786,171 + dctM DVU0705 0.84 -1.1 786,171 + dctM DVU0705 0.84 -2.3 786,318 - +2.9 786,336 - -1.2 786,378 - -0.5 786,398 + -0.0 786,406 - -1.9 786,450 + DVU0706 0.17 +4.2 786,566 - DVU0706 0.41 -0.5 786,733 - DVU0706 0.77 +0.9 786,780 + DVU0706 0.87 -2.2 786,780 + DVU0706 0.87 -1.7 786,788 - DVU0706 0.89 -1.1 786,788 - DVU0706 0.89 -0.5 786,972 + +2.2 787,026 + -0.1 787,034 - dctP DVU0707 0.11 +0.9 787,049 - dctP DVU0707 0.12 -0.8 787,099 + dctP DVU0707 0.17 -0.4 787,205 - dctP DVU0707 0.27 -2.0 787,212 - dctP DVU0707 0.28 +0.0 787,226 - dctP DVU0707 0.29 +1.1 787,226 - dctP DVU0707 0.29 +0.9 787,244 + dctP DVU0707 0.31 -0.2 787,285 - dctP DVU0707 0.35 +0.7 787,310 - dctP DVU0707 0.38 +1.9 787,310 - dctP DVU0707 0.38 -2.5
Or see this region's nucleotide sequence