Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2545

Experiment: 12:12 LD cycle bioreactor

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	12:12 LD cycle bioreactor
2,623,984	+		Synpcc7942_2543	0.34	-1.4
2,623,984	+		Synpcc7942_2543	0.34	-0.9
2,623,989	-		Synpcc7942_2543	0.35	-1.4
2,624,043	+		Synpcc7942_2543	0.43	+0.7
2,624,125	+		Synpcc7942_2543	0.54	-0.5
2,624,146	-		Synpcc7942_2543	0.57	-0.1
2,624,171	+		Synpcc7942_2543	0.61	+0.3
2,624,191	-		Synpcc7942_2543	0.63	-1.9
2,624,196	-		Synpcc7942_2543	0.64	+2.6
2,624,224	+		Synpcc7942_2543	0.68	-1.1
2,624,235	+		Synpcc7942_2543	0.70	-0.1
2,624,245	+		Synpcc7942_2543	0.71	+0.6
2,624,247	-		Synpcc7942_2543	0.71	+0.2
2,624,271	+		Synpcc7942_2543	0.75	-0.4
2,624,276	+		Synpcc7942_2543	0.75	-2.0
2,624,286	+		Synpcc7942_2543	0.77	+0.2
2,624,287	+		Synpcc7942_2543	0.77	+1.3
2,624,294	-		Synpcc7942_2543	0.78	+0.4
2,624,294	-		Synpcc7942_2543	0.78	-0.7
2,624,294	-		Synpcc7942_2543	0.78	-0.2
2,624,294	-		Synpcc7942_2543	0.78	-0.1
2,624,294	-		Synpcc7942_2543	0.78	+1.1
2,624,296	+		Synpcc7942_2543	0.78	-0.8
2,624,325	-		Synpcc7942_2543	0.82	-0.5
2,624,346	-		Synpcc7942_2543	0.85	+2.1
2,624,354	+		Synpcc7942_2543	0.86	-0.7
2,624,388	-				-0.8
2,624,428	+				-0.4
2,624,428	+				+2.3
2,624,428	+				+1.3
2,624,432	+				-0.3
2,624,451	+				+0.3
2,624,476	+				+0.3
2,624,484	-				+0.9
2,624,484	-				-0.7
2,624,484	-				-1.4
2,624,486	+				-0.8
2,624,494	-				+1.1
2,624,517	+				-0.9
2,624,527	-		Synpcc7942_2544	0.12	-0.0
2,624,535	-		Synpcc7942_2544	0.14	+1.3
2,624,572	+		Synpcc7942_2544	0.24	-1.2
2,624,579	+		Synpcc7942_2544	0.26	+0.3
2,624,597	+		Synpcc7942_2544	0.30	+3.0
2,624,617	+		Synpcc7942_2544	0.35	-0.4
2,624,625	-		Synpcc7942_2544	0.37	-0.2
2,624,661	+		Synpcc7942_2544	0.47	-0.7
2,624,661	+		Synpcc7942_2544	0.47	+0.4
2,624,669	+		Synpcc7942_2544	0.49	-0.5
2,624,706	+		Synpcc7942_2544	0.58	+0.6
2,624,706	+		Synpcc7942_2544	0.58	+0.7
2,624,714	-		Synpcc7942_2544	0.60	+0.7
2,624,771	+		Synpcc7942_2544	0.75	+0.9
2,624,771	+		Synpcc7942_2544	0.75	-0.3
2,624,771	+		Synpcc7942_2544	0.75	+0.4
2,624,779	-		Synpcc7942_2544	0.77	+2.3
2,624,779	-		Synpcc7942_2544	0.77	+1.0
2,624,797	+		Synpcc7942_2544	0.82	+0.9
2,624,802	+		Synpcc7942_2544	0.83	+1.9
2,624,802	-		Synpcc7942_2544	0.83	+0.3
2,624,804	+		Synpcc7942_2544	0.83	+1.2
2,624,807	+		Synpcc7942_2544	0.84	+3.0
2,624,807	+		Synpcc7942_2544	0.84	-0.7
2,624,807	+		Synpcc7942_2544	0.84	-1.2
2,624,807	-		Synpcc7942_2544	0.84	+1.4
2,624,812	-		Synpcc7942_2544	0.85	+1.1
2,624,812	-		Synpcc7942_2544	0.85	+1.0
2,624,812	-		Synpcc7942_2544	0.85	+1.6
2,624,812	-		Synpcc7942_2544	0.85	+1.3
2,624,812	-		Synpcc7942_2544	0.85	+0.9
2,624,815	-		Synpcc7942_2544	0.86	+1.8
2,624,815	-		Synpcc7942_2544	0.86	+1.0
2,624,815	-		Synpcc7942_2544	0.86	-0.7
2,624,815	-		Synpcc7942_2544	0.86	-0.3
2,624,815	-		Synpcc7942_2544	0.86	+2.2
2,624,815	-		Synpcc7942_2544	0.86	+1.5
2,624,843	+				+0.8
2,624,853	+				+1.2
2,624,853	+				+0.4
2,624,853	+				-0.0
2,624,861	-				-0.3
2,624,879	+				+0.8
2,624,920	-				+0.8
2,626,155	+				-0.4
2,626,169	-				+0.4
2,626,173	-				-1.4
2,626,173	-				+1.0
2,626,183	-				+0.3
2,626,185	+				+0.3
2,626,202	+				-0.4
2,626,207	+				+2.2
2,626,210	-				-0.5
2,626,239	+				-0.0
2,626,239	+				+0.7
2,626,241	-				-0.9
2,626,303	-				-1.0
2,626,305	-				+0.6
2,626,305	-				+1.3
2,626,312	+		Synpcc7942_2546	0.10	+1.4
2,626,318	-		Synpcc7942_2546	0.11	-0.1
2,626,341	+		Synpcc7942_2546	0.14	-0.8
2,626,341	+		Synpcc7942_2546	0.14	-0.1
2,626,371	+		Synpcc7942_2546	0.19	+1.0
2,626,375	+		Synpcc7942_2546	0.19	-0.3
2,626,384	-		Synpcc7942_2546	0.20	-0.7
2,626,384	-		Synpcc7942_2546	0.20	-0.0
2,626,386	+		Synpcc7942_2546	0.21	-0.4
2,626,389	-		Synpcc7942_2546	0.21	-0.5
2,626,391	-		Synpcc7942_2546	0.21	+1.9
2,626,415	-		Synpcc7942_2546	0.25	+0.3
2,626,420	-		Synpcc7942_2546	0.25	-0.1
2,626,448	-		Synpcc7942_2546	0.29	-0.0
2,626,494	-		Synpcc7942_2546	0.36	-0.3
2,626,505	+		Synpcc7942_2546	0.37	+0.9
2,626,505	+		Synpcc7942_2546	0.37	+1.6
2,626,513	-		Synpcc7942_2546	0.38	+0.6
2,626,587	-		Synpcc7942_2546	0.49	-0.0
2,626,679	+		Synpcc7942_2546	0.61	-0.4
2,626,687	-		Synpcc7942_2546	0.62	+0.4
2,626,725	+		Synpcc7942_2546	0.68	+0.9
2,626,733	-		Synpcc7942_2546	0.69	-0.9
2,626,754	-		Synpcc7942_2546	0.72	-0.3
2,626,754	-		Synpcc7942_2546	0.72	-0.7
2,626,754	-		Synpcc7942_2546	0.72	-1.3
2,626,761	+		Synpcc7942_2546	0.73	-1.5
2,626,761	+		Synpcc7942_2546	0.73	-0.2
2,626,769	-		Synpcc7942_2546	0.74	-0.0
2,626,769	-		Synpcc7942_2546	0.74	+1.9
2,626,770	-		Synpcc7942_2546	0.74	-1.3
2,626,772	+		Synpcc7942_2546	0.74	+0.8
2,626,780	-		Synpcc7942_2546	0.75	-0.0
2,626,794	-		Synpcc7942_2546	0.77	+0.4
2,626,808	-		Synpcc7942_2546	0.79	-0.1
2,626,863	+		Synpcc7942_2546	0.87	-0.0
2,626,863	+		Synpcc7942_2546	0.87	+0.5
2,626,864	+		Synpcc7942_2546	0.87	-1.1
2,626,864	+		Synpcc7942_2546	0.87	+0.2
2,626,864	-		Synpcc7942_2546	0.87	-0.9
2,626,869	+		Synpcc7942_2546	0.88	+0.7
2,626,869	+		Synpcc7942_2546	0.88	+0.5
2,626,872	-		Synpcc7942_2546	0.88	+0.3
2,626,879	+		Synpcc7942_2546	0.89	-0.7
2,626,879	+		Synpcc7942_2546	0.89	-0.8
2,626,879	+		Synpcc7942_2546	0.89	+0.9
2,626,880	+		Synpcc7942_2546	0.89	+0.3
2,626,888	-				+0.9
2,626,888	-				+1.3
2,626,888	-				+1.1
2,626,888	-				-0.7
2,626,888	-				+0.4
2,626,900	-				+1.3
2,626,937	-				+1.3
2,626,964	+				-0.9
2,626,964	+				+1.3
2,626,964	+				+0.3
2,626,970	-				-0.2
2,626,972	-				+0.3
2,626,993	+				+1.0
2,627,007	-				+0.3
2,627,031	+				+0.7
2,627,045	-		Synpcc7942_2547	0.12	+0.3
2,627,090	-		Synpcc7942_2547	0.26	+1.9
2,627,090	-		Synpcc7942_2547	0.26	+0.5
2,627,120	-		Synpcc7942_2547	0.36	-0.3
2,627,136	+		Synpcc7942_2547	0.41	-0.3