Experiment: KB with Isoliquiritigenin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4620 and Psyr_4621 are separated by 21 nucleotides Psyr_4621 and Psyr_4622 are separated by 0 nucleotides Psyr_4622 and Psyr_4623 are separated by 48 nucleotides
Psyr_4620: Psyr_4620 - conserved hypothetical protein, at 5,478,853 to 5,479,857
_4620
Psyr_4621: Psyr_4621 - Heat shock protein DnaJ, N-terminal, at 5,479,879 to 5,480,646
_4621
Psyr_4622: Psyr_4622 - Nucleotidyl transferase, at 5,480,647 to 5,481,369
_4622
Psyr_4623: Psyr_4623 - Aminoglycoside phosphotransferase, at 5,481,418 to 5,482,440
_4623
Position (kb) 5479
5480
5481 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5478.902 kb on + strand at 5479.022 kb on + strand, within Psyr_4620 at 5479.023 kb on - strand, within Psyr_4620 at 5479.257 kb on + strand, within Psyr_4620 at 5479.617 kb on + strand, within Psyr_4620 at 5479.618 kb on - strand, within Psyr_4620 at 5479.664 kb on + strand, within Psyr_4620 at 5479.665 kb on - strand, within Psyr_4620 at 5479.665 kb on - strand, within Psyr_4620 at 5479.665 kb on - strand, within Psyr_4620 at 5479.685 kb on - strand, within Psyr_4620 at 5479.685 kb on - strand, within Psyr_4620 at 5479.731 kb on + strand, within Psyr_4620 at 5479.811 kb on + strand at 5479.812 kb on - strand at 5479.812 kb on - strand at 5479.812 kb on - strand at 5479.812 kb on - strand at 5479.836 kb on - strand at 5479.836 kb on - strand at 5479.836 kb on - strand at 5479.855 kb on + strand at 5479.856 kb on - strand at 5480.087 kb on + strand, within Psyr_4621 at 5480.088 kb on - strand, within Psyr_4621 at 5480.088 kb on - strand, within Psyr_4621 at 5480.259 kb on + strand, within Psyr_4621 at 5480.259 kb on + strand, within Psyr_4621 at 5480.259 kb on + strand, within Psyr_4621 at 5480.259 kb on + strand, within Psyr_4621 at 5480.259 kb on + strand, within Psyr_4621 at 5480.259 kb on + strand, within Psyr_4621 at 5480.259 kb on + strand, within Psyr_4621 at 5480.259 kb on + strand, within Psyr_4621 at 5480.259 kb on + strand, within Psyr_4621 at 5480.260 kb on - strand, within Psyr_4621 at 5480.260 kb on - strand, within Psyr_4621 at 5480.260 kb on - strand, within Psyr_4621 at 5480.260 kb on - strand, within Psyr_4621 at 5480.260 kb on - strand, within Psyr_4621 at 5480.260 kb on - strand, within Psyr_4621 at 5480.260 kb on - strand, within Psyr_4621 at 5480.260 kb on - strand, within Psyr_4621 at 5480.260 kb on - strand, within Psyr_4621 at 5480.260 kb on - strand, within Psyr_4621 at 5480.300 kb on + strand, within Psyr_4621 at 5480.301 kb on - strand, within Psyr_4621 at 5480.301 kb on - strand, within Psyr_4621 at 5480.412 kb on + strand, within Psyr_4621 at 5480.723 kb on + strand, within Psyr_4622 at 5480.724 kb on - strand, within Psyr_4622 at 5480.840 kb on + strand, within Psyr_4622 at 5480.840 kb on + strand, within Psyr_4622 at 5480.841 kb on - strand, within Psyr_4622 at 5480.841 kb on - strand, within Psyr_4622 at 5480.936 kb on - strand, within Psyr_4622 at 5481.052 kb on + strand, within Psyr_4622 at 5481.052 kb on + strand, within Psyr_4622 at 5481.053 kb on - strand, within Psyr_4622 at 5481.053 kb on - strand, within Psyr_4622 at 5481.131 kb on + strand, within Psyr_4622 at 5481.132 kb on - strand, within Psyr_4622 at 5481.132 kb on - strand, within Psyr_4622 at 5481.226 kb on + strand, within Psyr_4622 at 5481.226 kb on + strand, within Psyr_4622 at 5481.227 kb on - strand, within Psyr_4622 at 5481.227 kb on - strand, within Psyr_4622 at 5481.227 kb on - strand, within Psyr_4622 at 5481.380 kb on + strand at 5481.381 kb on - strand at 5481.502 kb on + strand at 5481.502 kb on + strand at 5481.502 kb on + strand at 5481.503 kb on - strand at 5481.503 kb on - strand at 5481.503 kb on - strand at 5481.503 kb on - strand at 5481.503 kb on - strand at 5481.503 kb on - strand at 5481.504 kb on + strand at 5481.504 kb on + strand at 5481.504 kb on + strand at 5481.504 kb on + strand at 5481.504 kb on + strand at 5481.504 kb on + strand at 5481.504 kb on + strand at 5481.505 kb on - strand at 5481.505 kb on - strand at 5481.505 kb on - strand at 5481.505 kb on - strand at 5481.505 kb on - strand at 5481.505 kb on - strand at 5481.505 kb on - strand at 5481.505 kb on - strand at 5481.505 kb on - strand at 5481.505 kb on - strand at 5481.505 kb on - strand at 5481.506 kb on + strand at 5481.506 kb on + strand at 5481.507 kb on - strand at 5481.507 kb on - strand at 5481.507 kb on - strand at 5481.507 kb on - strand at 5481.507 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Isoliquiritigenin 10 mM remove 5,478,902 + -0.0 5,479,022 + Psyr_4620 0.17 +0.6 5,479,023 - Psyr_4620 0.17 +0.3 5,479,257 + Psyr_4620 0.40 -0.6 5,479,617 + Psyr_4620 0.76 -0.3 5,479,618 - Psyr_4620 0.76 +0.4 5,479,664 + Psyr_4620 0.81 -1.1 5,479,665 - Psyr_4620 0.81 -0.4 5,479,665 - Psyr_4620 0.81 -0.8 5,479,665 - Psyr_4620 0.81 -1.5 5,479,685 - Psyr_4620 0.83 -0.9 5,479,685 - Psyr_4620 0.83 +1.9 5,479,731 + Psyr_4620 0.87 -1.3 5,479,811 + -0.1 5,479,812 - +0.8 5,479,812 - -1.1 5,479,812 - -0.4 5,479,812 - +0.3 5,479,836 - +0.2 5,479,836 - +0.9 5,479,836 - -0.3 5,479,855 + -0.7 5,479,856 - -0.5 5,480,087 + Psyr_4621 0.27 +0.2 5,480,088 - Psyr_4621 0.27 +0.3 5,480,088 - Psyr_4621 0.27 +0.3 5,480,259 + Psyr_4621 0.49 -1.6 5,480,259 + Psyr_4621 0.49 -0.7 5,480,259 + Psyr_4621 0.49 -1.6 5,480,259 + Psyr_4621 0.49 -2.0 5,480,259 + Psyr_4621 0.49 +0.5 5,480,259 + Psyr_4621 0.49 +1.2 5,480,259 + Psyr_4621 0.49 -0.7 5,480,259 + Psyr_4621 0.49 -0.4 5,480,259 + Psyr_4621 0.49 +2.2 5,480,260 - Psyr_4621 0.50 -0.7 5,480,260 - Psyr_4621 0.50 +0.9 5,480,260 - Psyr_4621 0.50 -0.9 5,480,260 - Psyr_4621 0.50 -2.3 5,480,260 - Psyr_4621 0.50 -1.1 5,480,260 - Psyr_4621 0.50 -0.8 5,480,260 - Psyr_4621 0.50 -2.0 5,480,260 - Psyr_4621 0.50 -1.0 5,480,260 - Psyr_4621 0.50 -0.5 5,480,260 - Psyr_4621 0.50 +0.9 5,480,300 + Psyr_4621 0.55 -2.7 5,480,301 - Psyr_4621 0.55 -0.5 5,480,301 - Psyr_4621 0.55 -0.8 5,480,412 + Psyr_4621 0.69 -0.3 5,480,723 + Psyr_4622 0.11 -1.7 5,480,724 - Psyr_4622 0.11 -0.9 5,480,840 + Psyr_4622 0.27 +0.9 5,480,840 + Psyr_4622 0.27 -0.6 5,480,841 - Psyr_4622 0.27 -0.4 5,480,841 - Psyr_4622 0.27 +2.6 5,480,936 - Psyr_4622 0.40 +0.4 5,481,052 + Psyr_4622 0.56 -0.1 5,481,052 + Psyr_4622 0.56 +0.6 5,481,053 - Psyr_4622 0.56 -3.3 5,481,053 - Psyr_4622 0.56 -0.1 5,481,131 + Psyr_4622 0.67 -0.5 5,481,132 - Psyr_4622 0.67 -2.8 5,481,132 - Psyr_4622 0.67 -1.0 5,481,226 + Psyr_4622 0.80 -0.2 5,481,226 + Psyr_4622 0.80 -2.2 5,481,227 - Psyr_4622 0.80 -0.3 5,481,227 - Psyr_4622 0.80 -2.8 5,481,227 - Psyr_4622 0.80 -2.4 5,481,380 + -0.4 5,481,381 - +1.3 5,481,502 + +0.9 5,481,502 + +0.5 5,481,502 + -1.5 5,481,503 - -0.4 5,481,503 - +0.6 5,481,503 - -1.3 5,481,503 - -0.5 5,481,503 - -3.0 5,481,503 - -0.1 5,481,504 + -1.1 5,481,504 + -2.6 5,481,504 + -2.9 5,481,504 + +2.2 5,481,504 + -1.3 5,481,504 + -1.8 5,481,504 + +1.5 5,481,505 - -2.3 5,481,505 - +0.4 5,481,505 - +0.9 5,481,505 - +1.5 5,481,505 - -1.9 5,481,505 - +2.3 5,481,505 - +0.0 5,481,505 - -0.2 5,481,505 - -1.5 5,481,505 - -1.3 5,481,505 - -0.1 5,481,506 + -1.6 5,481,506 + -1.1 5,481,507 - -2.5 5,481,507 - +0.0 5,481,507 - -0.1 5,481,507 - +0.7 5,481,507 - +1.3
Or see this region's nucleotide sequence