Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3505

Experiment: KB with Isoliquiritigenin 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3504 and Psyr_3505 overlap by 4 nucleotidesPsyr_3505 and Psyr_3506 are separated by 351 nucleotides Psyr_3504: Psyr_3504 - GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal, at 4,177,750 to 4,179,987 _3504 Psyr_3505: Psyr_3505 - Heme oxygenase, at 4,179,984 to 4,180,598 _3505 Psyr_3506: Psyr_3506 - Sulfatase, at 4,180,950 to 4,182,983 _3506 Position (kb) 4179 4180 4181Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4179.029 kb on - strand, within Psyr_3504at 4179.029 kb on - strand, within Psyr_3504at 4179.113 kb on + strand, within Psyr_3504at 4179.113 kb on + strand, within Psyr_3504at 4179.114 kb on - strand, within Psyr_3504at 4179.114 kb on - strand, within Psyr_3504at 4179.212 kb on + strand, within Psyr_3504at 4179.212 kb on + strand, within Psyr_3504at 4179.213 kb on - strand, within Psyr_3504at 4179.213 kb on - strand, within Psyr_3504at 4179.213 kb on - strand, within Psyr_3504at 4179.213 kb on - strand, within Psyr_3504at 4179.314 kb on + strand, within Psyr_3504at 4179.314 kb on + strandat 4179.315 kb on - strand, within Psyr_3504at 4179.330 kb on + strand, within Psyr_3504at 4179.473 kb on + strand, within Psyr_3504at 4179.492 kb on - strand, within Psyr_3504at 4179.602 kb on + strand, within Psyr_3504at 4179.602 kb on + strand, within Psyr_3504at 4179.670 kb on + strand, within Psyr_3504at 4179.671 kb on - strand, within Psyr_3504at 4179.671 kb on - strand, within Psyr_3504at 4179.671 kb on - strand, within Psyr_3504at 4179.885 kb on + strandat 4179.987 kb on + strandat 4179.988 kb on - strandat 4179.988 kb on - strandat 4179.988 kb on - strandat 4179.994 kb on - strandat 4179.994 kb on - strandat 4179.994 kb on - strandat 4179.994 kb on - strandat 4179.994 kb on - strandat 4180.065 kb on - strand, within Psyr_3505at 4180.138 kb on + strand, within Psyr_3505at 4180.138 kb on + strand, within Psyr_3505at 4180.138 kb on + strand, within Psyr_3505at 4180.138 kb on + strand, within Psyr_3505at 4180.139 kb on - strand, within Psyr_3505at 4180.139 kb on - strand, within Psyr_3505at 4180.139 kb on - strand, within Psyr_3505at 4180.139 kb on - strand, within Psyr_3505at 4180.139 kb on - strand, within Psyr_3505at 4180.139 kb on - strand, within Psyr_3505at 4180.139 kb on - strand, within Psyr_3505at 4180.191 kb on + strand, within Psyr_3505at 4180.191 kb on + strand, within Psyr_3505at 4180.191 kb on + strand, within Psyr_3505at 4180.192 kb on - strand, within Psyr_3505at 4180.236 kb on + strand, within Psyr_3505at 4180.236 kb on + strand, within Psyr_3505at 4180.237 kb on - strand, within Psyr_3505at 4180.237 kb on - strand, within Psyr_3505at 4180.240 kb on + strand, within Psyr_3505at 4180.240 kb on + strand, within Psyr_3505at 4180.240 kb on + strand, within Psyr_3505at 4180.240 kb on + strand, within Psyr_3505at 4180.240 kb on + strand, within Psyr_3505at 4180.240 kb on + strand, within Psyr_3505at 4180.240 kb on + strand, within Psyr_3505at 4180.240 kb on + strand, within Psyr_3505at 4180.240 kb on + strand, within Psyr_3505at 4180.240 kb on + strand, within Psyr_3505at 4180.240 kb on + strand, within Psyr_3505at 4180.240 kb on + strand, within Psyr_3505at 4180.240 kb on + strand, within Psyr_3505at 4180.240 kb on + strand, within Psyr_3505at 4180.240 kb on + strand, within Psyr_3505at 4180.240 kb on + strand, within Psyr_3505at 4180.240 kb on + strand, within Psyr_3505at 4180.240 kb on + strand, within Psyr_3505at 4180.241 kb on - strand, within Psyr_3505at 4180.241 kb on - strand, within Psyr_3505at 4180.241 kb on - strand, within Psyr_3505at 4180.241 kb on - strand, within Psyr_3505at 4180.241 kb on - strand, within Psyr_3505at 4180.241 kb on - strand, within Psyr_3505at 4180.241 kb on - strand, within Psyr_3505at 4180.241 kb on - strand, within Psyr_3505at 4180.241 kb on - strand, within Psyr_3505at 4180.241 kb on - strand, within Psyr_3505at 4180.241 kb on - strand, within Psyr_3505at 4180.241 kb on - strand, within Psyr_3505at 4180.241 kb on - strand, within Psyr_3505at 4180.241 kb on - strand, within Psyr_3505at 4180.241 kb on - strand, within Psyr_3505at 4180.241 kb on - strand, within Psyr_3505at 4180.241 kb on - strand, within Psyr_3505at 4180.241 kb on - strand, within Psyr_3505at 4180.241 kb on - strand, within Psyr_3505at 4180.395 kb on + strand, within Psyr_3505at 4180.435 kb on + strand, within Psyr_3505at 4180.435 kb on + strand, within Psyr_3505at 4180.435 kb on + strand, within Psyr_3505at 4180.436 kb on - strand, within Psyr_3505at 4180.447 kb on + strand, within Psyr_3505at 4180.448 kb on - strand, within Psyr_3505at 4180.448 kb on - strand, within Psyr_3505at 4180.468 kb on + strand, within Psyr_3505at 4180.663 kb on + strandat 4180.714 kb on - strandat 4180.714 kb on - strandat 4180.798 kb on + strandat 4180.799 kb on - strandat 4180.816 kb on + strandat 4180.816 kb on + strandat 4180.816 kb on + strandat 4180.818 kb on + strandat 4180.819 kb on - strandat 4180.860 kb on - strandat 4180.966 kb on + strandat 4180.967 kb on - strandat 4181.122 kb on + strandat 4181.122 kb on + strandat 4181.123 kb on - strandat 4181.123 kb on - strandat 4181.156 kb on + strand, within Psyr_3506at 4181.156 kb on + strand, within Psyr_3506at 4181.156 kb on + strand, within Psyr_3506at 4181.156 kb on + strand, within Psyr_3506at 4181.157 kb on - strand, within Psyr_3506at 4181.157 kb on - strand, within Psyr_3506at 4181.452 kb on + strand, within Psyr_3506at 4181.521 kb on + strand, within Psyr_3506at 4181.521 kb on + strand, within Psyr_3506at 4181.521 kb on + strand, within Psyr_3506at 4181.521 kb on + strand, within Psyr_3506at 4181.521 kb on + strand, within Psyr_3506at 4181.521 kb on + strand, within Psyr_3506at 4181.522 kb on - strand, within Psyr_3506at 4181.522 kb on - strand, within Psyr_3506at 4181.522 kb on - strand, within Psyr_3506

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Isoliquiritigenin 10 mM
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4,179,029 - Psyr_3504 0.57 +0.5
4,179,029 - Psyr_3504 0.57 -0.6
4,179,113 + Psyr_3504 0.61 +3.4
4,179,113 + Psyr_3504 0.61 +0.5
4,179,114 - Psyr_3504 0.61 +2.4
4,179,114 - Psyr_3504 0.61 -0.5
4,179,212 + Psyr_3504 0.65 +0.3
4,179,212 + Psyr_3504 0.65 -0.2
4,179,213 - Psyr_3504 0.65 -1.1
4,179,213 - Psyr_3504 0.65 +1.4
4,179,213 - Psyr_3504 0.65 +1.7
4,179,213 - Psyr_3504 0.65 -0.1
4,179,314 + Psyr_3504 0.70 -0.8
4,179,314 + +3.7
4,179,315 - Psyr_3504 0.70 +0.4
4,179,330 + Psyr_3504 0.71 -1.4
4,179,473 + Psyr_3504 0.77 +0.4
4,179,492 - Psyr_3504 0.78 +0.6
4,179,602 + Psyr_3504 0.83 +1.6
4,179,602 + Psyr_3504 0.83 -0.3
4,179,670 + Psyr_3504 0.86 +0.7
4,179,671 - Psyr_3504 0.86 +1.1
4,179,671 - Psyr_3504 0.86 -0.5
4,179,671 - Psyr_3504 0.86 -0.8
4,179,885 + +1.7
4,179,987 + +0.4
4,179,988 - -1.7
4,179,988 - -1.8
4,179,988 - +0.4
4,179,994 - +2.1
4,179,994 - -3.2
4,179,994 - +0.2
4,179,994 - -0.1
4,179,994 - +0.1
4,180,065 - Psyr_3505 0.13 +0.7
4,180,138 + Psyr_3505 0.25 -0.3
4,180,138 + Psyr_3505 0.25 -0.3
4,180,138 + Psyr_3505 0.25 -0.2
4,180,138 + Psyr_3505 0.25 +0.5
4,180,139 - Psyr_3505 0.25 +1.1
4,180,139 - Psyr_3505 0.25 +2.3
4,180,139 - Psyr_3505 0.25 -0.3
4,180,139 - Psyr_3505 0.25 -0.3
4,180,139 - Psyr_3505 0.25 +0.2
4,180,139 - Psyr_3505 0.25 -0.1
4,180,139 - Psyr_3505 0.25 -0.4
4,180,191 + Psyr_3505 0.34 -0.1
4,180,191 + Psyr_3505 0.34 -2.6
4,180,191 + Psyr_3505 0.34 -2.2
4,180,192 - Psyr_3505 0.34 +0.6
4,180,236 + Psyr_3505 0.41 -0.4
4,180,236 + Psyr_3505 0.41 -0.5
4,180,237 - Psyr_3505 0.41 -1.1
4,180,237 - Psyr_3505 0.41 -1.7
4,180,240 + Psyr_3505 0.42 +0.4
4,180,240 + Psyr_3505 0.42 +0.8
4,180,240 + Psyr_3505 0.42 -0.2
4,180,240 + Psyr_3505 0.42 -1.0
4,180,240 + Psyr_3505 0.42 -1.4
4,180,240 + Psyr_3505 0.42 +1.4
4,180,240 + Psyr_3505 0.42 +0.8
4,180,240 + Psyr_3505 0.42 +0.1
4,180,240 + Psyr_3505 0.42 +1.3
4,180,240 + Psyr_3505 0.42 +0.2
4,180,240 + Psyr_3505 0.42 +0.1
4,180,240 + Psyr_3505 0.42 +1.6
4,180,240 + Psyr_3505 0.42 -0.8
4,180,240 + Psyr_3505 0.42 -0.5
4,180,240 + Psyr_3505 0.42 +0.6
4,180,240 + Psyr_3505 0.42 -0.9
4,180,240 + Psyr_3505 0.42 +0.9
4,180,240 + Psyr_3505 0.42 -0.6
4,180,241 - Psyr_3505 0.42 +0.5
4,180,241 - Psyr_3505 0.42 -0.2
4,180,241 - Psyr_3505 0.42 -1.4
4,180,241 - Psyr_3505 0.42 +0.1
4,180,241 - Psyr_3505 0.42 +0.8
4,180,241 - Psyr_3505 0.42 -0.2
4,180,241 - Psyr_3505 0.42 +0.8
4,180,241 - Psyr_3505 0.42 -1.2
4,180,241 - Psyr_3505 0.42 -0.1
4,180,241 - Psyr_3505 0.42 -0.7
4,180,241 - Psyr_3505 0.42 -0.9
4,180,241 - Psyr_3505 0.42 -2.0
4,180,241 - Psyr_3505 0.42 +0.3
4,180,241 - Psyr_3505 0.42 -1.9
4,180,241 - Psyr_3505 0.42 -0.4
4,180,241 - Psyr_3505 0.42 +0.1
4,180,241 - Psyr_3505 0.42 +0.5
4,180,241 - Psyr_3505 0.42 -2.2
4,180,241 - Psyr_3505 0.42 -0.9
4,180,395 + Psyr_3505 0.67 -0.1
4,180,435 + Psyr_3505 0.73 -1.3
4,180,435 + Psyr_3505 0.73 -0.4
4,180,435 + Psyr_3505 0.73 +0.4
4,180,436 - Psyr_3505 0.73 -0.9
4,180,447 + Psyr_3505 0.75 -1.2
4,180,448 - Psyr_3505 0.75 +0.1
4,180,448 - Psyr_3505 0.75 -1.5
4,180,468 + Psyr_3505 0.79 +0.9
4,180,663 + -0.1
4,180,714 - +0.7
4,180,714 - +0.1
4,180,798 + -0.1
4,180,799 - -1.3
4,180,816 + +0.8
4,180,816 + +2.2
4,180,816 + +2.1
4,180,818 + +0.2
4,180,819 - +0.3
4,180,860 - -0.1
4,180,966 + -2.4
4,180,967 - +0.7
4,181,122 + +1.2
4,181,122 + +1.1
4,181,123 - +0.8
4,181,123 - -0.1
4,181,156 + Psyr_3506 0.10 -0.4
4,181,156 + Psyr_3506 0.10 -0.9
4,181,156 + Psyr_3506 0.10 -1.6
4,181,156 + Psyr_3506 0.10 -1.0
4,181,157 - Psyr_3506 0.10 +0.2
4,181,157 - Psyr_3506 0.10 -0.4
4,181,452 + Psyr_3506 0.25 -2.4
4,181,521 + Psyr_3506 0.28 -1.9
4,181,521 + Psyr_3506 0.28 -0.2
4,181,521 + Psyr_3506 0.28 +1.1
4,181,521 + Psyr_3506 0.28 -1.2
4,181,521 + Psyr_3506 0.28 -2.5
4,181,521 + Psyr_3506 0.28 -0.9
4,181,522 - Psyr_3506 0.28 +1.1
4,181,522 - Psyr_3506 0.28 -0.9
4,181,522 - Psyr_3506 0.28 -0.6

Or see this region's nucleotide sequence