Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3451

Experiment: KB with Isoliquiritigenin 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3449 and Psyr_3450 are separated by 112 nucleotidesPsyr_3450 and Psyr_3451 are separated by 34 nucleotidesPsyr_3451 and Psyr_3452 overlap by 41 nucleotidesPsyr_3452 and Psyr_3453 are separated by 84 nucleotidesPsyr_3453 and Psyr_3454 are separated by 6 nucleotides Psyr_3449: Psyr_3449 - Flagellar hook-length control protein, at 4,112,426 to 4,113,829 _3449 Psyr_3450: Psyr_3450 - Hpt, at 4,113,942 to 4,114,298 _3450 Psyr_3451: Psyr_3451 - Response regulator receiver:ATP-binding region, ATPase-like:Stage II sporulation E, at 4,114,333 to 4,116,039 _3451 Psyr_3452: Psyr_3452 - Sulfate transporter/antisigma-factor antagonist STAS, at 4,115,999 to 4,116,346 _3452 Psyr_3453: Psyr_3453 - flagellar protein FliJ, putative, at 4,116,431 to 4,116,880 _3453 Psyr_3454: Psyr_3454 - ATPase FliI/YscN, at 4,116,887 to 4,118,245 _3454 Position (kb) 4114 4115 4116 4117Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4113.359 kb on + strand, within Psyr_3449at 4113.360 kb on - strand, within Psyr_3449at 4113.360 kb on - strand, within Psyr_3449at 4113.360 kb on - strandat 4113.702 kb on + strandat 4113.702 kb on + strandat 4113.702 kb on + strandat 4113.702 kb on + strandat 4113.702 kb on + strandat 4113.703 kb on - strandat 4113.703 kb on - strandat 4113.818 kb on - strandat 4113.871 kb on + strandat 4113.881 kb on + strandat 4113.883 kb on + strandat 4113.894 kb on + strandat 4113.898 kb on + strandat 4113.898 kb on + strandat 4113.898 kb on + strandat 4113.899 kb on - strandat 4113.899 kb on - strandat 4113.928 kb on - strandat 4113.994 kb on + strand, within Psyr_3450at 4113.994 kb on + strand, within Psyr_3450at 4113.994 kb on + strand, within Psyr_3450at 4113.994 kb on + strand, within Psyr_3450at 4113.994 kb on + strand, within Psyr_3450at 4113.994 kb on + strand, within Psyr_3450at 4113.995 kb on - strand, within Psyr_3450at 4113.995 kb on - strand, within Psyr_3450at 4113.995 kb on - strand, within Psyr_3450at 4113.995 kb on - strand, within Psyr_3450at 4114.193 kb on + strand, within Psyr_3450at 4114.265 kb on + strandat 4114.266 kb on - strandat 4114.266 kb on - strandat 4114.279 kb on + strandat 4114.280 kb on - strandat 4114.334 kb on + strandat 4114.334 kb on + strandat 4114.334 kb on + strandat 4114.334 kb on + strandat 4114.335 kb on - strandat 4114.335 kb on - strandat 4114.436 kb on + strandat 4114.436 kb on + strandat 4114.436 kb on + strandat 4114.436 kb on + strandat 4114.436 kb on + strandat 4114.437 kb on - strandat 4114.437 kb on - strandat 4114.437 kb on - strandat 4114.608 kb on - strandat 4114.608 kb on - strand, within Psyr_3451at 4114.610 kb on + strand, within Psyr_3451at 4114.610 kb on + strand, within Psyr_3451at 4114.610 kb on + strand, within Psyr_3451at 4114.610 kb on + strand, within Psyr_3451at 4114.610 kb on + strand, within Psyr_3451at 4114.611 kb on - strand, within Psyr_3451at 4114.611 kb on - strand, within Psyr_3451at 4114.611 kb on - strand, within Psyr_3451at 4114.611 kb on - strand, within Psyr_3451at 4114.611 kb on - strand, within Psyr_3451at 4114.685 kb on + strand, within Psyr_3451at 4114.704 kb on + strand, within Psyr_3451at 4114.704 kb on + strand, within Psyr_3451at 4114.704 kb on + strand, within Psyr_3451at 4114.704 kb on + strand, within Psyr_3451at 4114.704 kb on + strand, within Psyr_3451at 4114.705 kb on - strand, within Psyr_3451at 4114.705 kb on - strand, within Psyr_3451at 4114.759 kb on + strand, within Psyr_3451at 4114.759 kb on + strand, within Psyr_3451at 4114.760 kb on - strand, within Psyr_3451at 4114.763 kb on + strand, within Psyr_3451at 4114.763 kb on + strand, within Psyr_3451at 4114.763 kb on + strand, within Psyr_3451at 4114.763 kb on + strand, within Psyr_3451at 4114.853 kb on + strand, within Psyr_3451at 4114.853 kb on + strand, within Psyr_3451at 4114.853 kb on + strand, within Psyr_3451at 4114.853 kb on + strand, within Psyr_3451at 4114.853 kb on + strand, within Psyr_3451at 4114.853 kb on + strand, within Psyr_3451at 4114.853 kb on + strand, within Psyr_3451at 4114.854 kb on - strand, within Psyr_3451at 4114.854 kb on - strand, within Psyr_3451at 4114.854 kb on - strand, within Psyr_3451at 4114.854 kb on - strand, within Psyr_3451at 4115.077 kb on + strand, within Psyr_3451at 4115.077 kb on + strand, within Psyr_3451at 4115.077 kb on + strand, within Psyr_3451at 4115.078 kb on - strand, within Psyr_3451at 4115.078 kb on - strand, within Psyr_3451at 4115.078 kb on - strand, within Psyr_3451at 4115.103 kb on - strand, within Psyr_3451at 4115.140 kb on + strand, within Psyr_3451at 4115.259 kb on + strand, within Psyr_3451at 4115.259 kb on + strand, within Psyr_3451at 4115.260 kb on - strand, within Psyr_3451at 4115.369 kb on + strand, within Psyr_3451at 4115.369 kb on + strand, within Psyr_3451at 4115.369 kb on + strand, within Psyr_3451at 4115.370 kb on - strand, within Psyr_3451at 4115.370 kb on - strand, within Psyr_3451at 4115.370 kb on - strand, within Psyr_3451at 4115.370 kb on - strand, within Psyr_3451at 4115.370 kb on - strand, within Psyr_3451at 4115.465 kb on + strand, within Psyr_3451at 4115.465 kb on + strand, within Psyr_3451at 4115.465 kb on + strand, within Psyr_3451at 4115.466 kb on - strand, within Psyr_3451at 4115.466 kb on - strand, within Psyr_3451at 4115.466 kb on - strand, within Psyr_3451at 4115.466 kb on - strand, within Psyr_3451at 4115.466 kb on - strand, within Psyr_3451at 4115.601 kb on - strand, within Psyr_3451at 4115.601 kb on - strand, within Psyr_3451at 4115.653 kb on + strand, within Psyr_3451at 4115.706 kb on - strand, within Psyr_3451at 4115.718 kb on + strand, within Psyr_3451at 4115.718 kb on + strand, within Psyr_3451at 4115.718 kb on + strand, within Psyr_3451at 4115.718 kb on + strand, within Psyr_3451at 4115.718 kb on + strand, within Psyr_3451at 4115.719 kb on - strand, within Psyr_3451at 4115.719 kb on - strand, within Psyr_3451at 4115.719 kb on - strand, within Psyr_3451at 4115.719 kb on - strand, within Psyr_3451at 4115.719 kb on - strand, within Psyr_3451at 4115.719 kb on - strand, within Psyr_3451at 4116.044 kb on + strand, within Psyr_3452at 4116.219 kb on + strand, within Psyr_3452at 4116.219 kb on + strand, within Psyr_3452at 4116.219 kb on + strand, within Psyr_3452at 4116.219 kb on + strand, within Psyr_3452at 4116.219 kb on + strand, within Psyr_3452at 4116.220 kb on - strand, within Psyr_3452at 4116.220 kb on - strand, within Psyr_3452at 4116.220 kb on - strand, within Psyr_3452at 4116.220 kb on - strand, within Psyr_3452at 4116.220 kb on - strand, within Psyr_3452at 4116.247 kb on - strand, within Psyr_3452at 4116.247 kb on - strand, within Psyr_3452at 4116.247 kb on - strand, within Psyr_3452at 4116.247 kb on - strand, within Psyr_3452at 4116.296 kb on - strand, within Psyr_3452at 4116.297 kb on + strand, within Psyr_3452at 4116.297 kb on + strand, within Psyr_3452at 4116.298 kb on + strand, within Psyr_3452at 4116.298 kb on - strand, within Psyr_3452at 4116.298 kb on - strand, within Psyr_3452at 4116.298 kb on - strand, within Psyr_3452at 4116.298 kb on - strand, within Psyr_3452at 4116.298 kb on - strand, within Psyr_3452at 4116.298 kb on - strand, within Psyr_3452at 4116.298 kb on - strand, within Psyr_3452at 4116.298 kb on - strand, within Psyr_3452at 4116.298 kb on - strand, within Psyr_3452at 4116.388 kb on - strandat 4116.522 kb on + strand, within Psyr_3453at 4116.522 kb on + strand, within Psyr_3453at 4116.522 kb on + strand, within Psyr_3453at 4116.522 kb on + strand, within Psyr_3453at 4116.522 kb on + strand, within Psyr_3453at 4116.522 kb on + strand, within Psyr_3453at 4116.523 kb on - strand, within Psyr_3453at 4116.523 kb on - strand, within Psyr_3453at 4116.523 kb on - strand, within Psyr_3453at 4116.624 kb on + strand, within Psyr_3453at 4116.625 kb on - strand, within Psyr_3453at 4116.625 kb on - strand, within Psyr_3453at 4117.039 kb on - strand, within Psyr_3454

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Isoliquiritigenin 10 mM
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4,113,359 + Psyr_3449 0.66 -1.4
4,113,360 - Psyr_3449 0.67 -1.1
4,113,360 - Psyr_3449 0.67 -0.9
4,113,360 - +0.1
4,113,702 + +0.7
4,113,702 + +0.7
4,113,702 + +2.8
4,113,702 + +0.5
4,113,702 + +2.1
4,113,703 - +0.1
4,113,703 - -1.2
4,113,818 - +0.0
4,113,871 + -0.5
4,113,881 + +1.7
4,113,883 + -0.2
4,113,894 + -1.5
4,113,898 + -0.8
4,113,898 + -0.9
4,113,898 + +0.0
4,113,899 - -0.2
4,113,899 - +0.9
4,113,928 - -0.4
4,113,994 + Psyr_3450 0.15 -0.7
4,113,994 + Psyr_3450 0.15 -2.0
4,113,994 + Psyr_3450 0.15 -2.8
4,113,994 + Psyr_3450 0.15 -0.4
4,113,994 + Psyr_3450 0.15 +0.1
4,113,994 + Psyr_3450 0.15 -1.6
4,113,995 - Psyr_3450 0.15 +0.1
4,113,995 - Psyr_3450 0.15 -0.5
4,113,995 - Psyr_3450 0.15 +1.9
4,113,995 - Psyr_3450 0.15 -1.4
4,114,193 + Psyr_3450 0.70 +1.2
4,114,265 + -0.5
4,114,266 - +1.1
4,114,266 - +0.3
4,114,279 + -0.5
4,114,280 - -0.2
4,114,334 + +0.4
4,114,334 + -0.5
4,114,334 + +0.7
4,114,334 + +0.3
4,114,335 - -0.4
4,114,335 - -1.2
4,114,436 + +0.1
4,114,436 + -0.3
4,114,436 + +0.2
4,114,436 + +0.8
4,114,436 + +0.4
4,114,437 - +1.4
4,114,437 - -1.5
4,114,437 - -0.7
4,114,608 - +1.1
4,114,608 - Psyr_3451 0.16 -0.7
4,114,610 + Psyr_3451 0.16 -1.6
4,114,610 + Psyr_3451 0.16 +1.4
4,114,610 + Psyr_3451 0.16 +1.7
4,114,610 + Psyr_3451 0.16 -0.8
4,114,610 + Psyr_3451 0.16 -1.2
4,114,611 - Psyr_3451 0.16 +0.7
4,114,611 - Psyr_3451 0.16 -2.2
4,114,611 - Psyr_3451 0.16 +0.3
4,114,611 - Psyr_3451 0.16 -1.1
4,114,611 - Psyr_3451 0.16 +0.7
4,114,685 + Psyr_3451 0.21 +1.5
4,114,704 + Psyr_3451 0.22 -0.2
4,114,704 + Psyr_3451 0.22 +0.5
4,114,704 + Psyr_3451 0.22 +1.6
4,114,704 + Psyr_3451 0.22 +0.5
4,114,704 + Psyr_3451 0.22 +0.6
4,114,705 - Psyr_3451 0.22 +1.6
4,114,705 - Psyr_3451 0.22 -0.4
4,114,759 + Psyr_3451 0.25 +2.1
4,114,759 + Psyr_3451 0.25 +0.2
4,114,760 - Psyr_3451 0.25 +1.2
4,114,763 + Psyr_3451 0.25 -1.3
4,114,763 + Psyr_3451 0.25 -0.5
4,114,763 + Psyr_3451 0.25 -0.6
4,114,763 + Psyr_3451 0.25 +1.5
4,114,853 + Psyr_3451 0.30 +1.1
4,114,853 + Psyr_3451 0.30 -0.3
4,114,853 + Psyr_3451 0.30 -0.4
4,114,853 + Psyr_3451 0.30 +0.8
4,114,853 + Psyr_3451 0.30 +2.7
4,114,853 + Psyr_3451 0.30 +1.1
4,114,853 + Psyr_3451 0.30 -1.3
4,114,854 - Psyr_3451 0.31 +1.4
4,114,854 - Psyr_3451 0.31 -2.7
4,114,854 - Psyr_3451 0.31 -0.4
4,114,854 - Psyr_3451 0.31 +0.4
4,115,077 + Psyr_3451 0.44 +3.4
4,115,077 + Psyr_3451 0.44 +1.4
4,115,077 + Psyr_3451 0.44 +0.5
4,115,078 - Psyr_3451 0.44 +2.1
4,115,078 - Psyr_3451 0.44 +0.7
4,115,078 - Psyr_3451 0.44 +0.8
4,115,103 - Psyr_3451 0.45 +0.6
4,115,140 + Psyr_3451 0.47 +0.2
4,115,259 + Psyr_3451 0.54 +0.3
4,115,259 + Psyr_3451 0.54 +0.7
4,115,260 - Psyr_3451 0.54 -2.6
4,115,369 + Psyr_3451 0.61 +2.4
4,115,369 + Psyr_3451 0.61 +0.2
4,115,369 + Psyr_3451 0.61 +1.4
4,115,370 - Psyr_3451 0.61 +1.0
4,115,370 - Psyr_3451 0.61 -0.6
4,115,370 - Psyr_3451 0.61 +0.4
4,115,370 - Psyr_3451 0.61 -0.6
4,115,370 - Psyr_3451 0.61 +0.0
4,115,465 + Psyr_3451 0.66 +0.4
4,115,465 + Psyr_3451 0.66 +1.2
4,115,465 + Psyr_3451 0.66 +1.1
4,115,466 - Psyr_3451 0.66 +0.2
4,115,466 - Psyr_3451 0.66 +2.6
4,115,466 - Psyr_3451 0.66 -0.4
4,115,466 - Psyr_3451 0.66 +1.1
4,115,466 - Psyr_3451 0.66 -0.6
4,115,601 - Psyr_3451 0.74 -1.0
4,115,601 - Psyr_3451 0.74 +0.7
4,115,653 + Psyr_3451 0.77 -0.6
4,115,706 - Psyr_3451 0.80 +1.5
4,115,718 + Psyr_3451 0.81 +0.4
4,115,718 + Psyr_3451 0.81 +2.3
4,115,718 + Psyr_3451 0.81 -0.8
4,115,718 + Psyr_3451 0.81 +0.1
4,115,718 + Psyr_3451 0.81 +0.5
4,115,719 - Psyr_3451 0.81 -0.9
4,115,719 - Psyr_3451 0.81 -1.7
4,115,719 - Psyr_3451 0.81 +1.0
4,115,719 - Psyr_3451 0.81 -0.2
4,115,719 - Psyr_3451 0.81 +0.2
4,115,719 - Psyr_3451 0.81 -0.7
4,116,044 + Psyr_3452 0.13 -1.7
4,116,219 + Psyr_3452 0.63 -0.4
4,116,219 + Psyr_3452 0.63 +0.8
4,116,219 + Psyr_3452 0.63 +0.0
4,116,219 + Psyr_3452 0.63 +1.1
4,116,219 + Psyr_3452 0.63 +1.9
4,116,220 - Psyr_3452 0.64 -0.1
4,116,220 - Psyr_3452 0.64 +0.3
4,116,220 - Psyr_3452 0.64 +1.6
4,116,220 - Psyr_3452 0.64 +0.1
4,116,220 - Psyr_3452 0.64 +1.3
4,116,247 - Psyr_3452 0.71 -0.6
4,116,247 - Psyr_3452 0.71 +0.4
4,116,247 - Psyr_3452 0.71 +0.9
4,116,247 - Psyr_3452 0.71 +2.5
4,116,296 - Psyr_3452 0.85 -3.9
4,116,297 + Psyr_3452 0.86 +3.1
4,116,297 + Psyr_3452 0.86 -0.2
4,116,298 + Psyr_3452 0.86 -0.7
4,116,298 - Psyr_3452 0.86 +0.4
4,116,298 - Psyr_3452 0.86 +1.8
4,116,298 - Psyr_3452 0.86 -0.2
4,116,298 - Psyr_3452 0.86 +1.1
4,116,298 - Psyr_3452 0.86 -0.8
4,116,298 - Psyr_3452 0.86 -0.0
4,116,298 - Psyr_3452 0.86 +1.6
4,116,298 - Psyr_3452 0.86 -0.4
4,116,298 - Psyr_3452 0.86 +1.4
4,116,388 - -1.2
4,116,522 + Psyr_3453 0.20 -0.3
4,116,522 + Psyr_3453 0.20 -0.7
4,116,522 + Psyr_3453 0.20 -1.0
4,116,522 + Psyr_3453 0.20 -0.1
4,116,522 + Psyr_3453 0.20 +0.4
4,116,522 + Psyr_3453 0.20 +0.1
4,116,523 - Psyr_3453 0.20 +0.0
4,116,523 - Psyr_3453 0.20 -0.7
4,116,523 - Psyr_3453 0.20 +0.4
4,116,624 + Psyr_3453 0.43 +0.2
4,116,625 - Psyr_3453 0.43 +0.6
4,116,625 - Psyr_3453 0.43 +1.5
4,117,039 - Psyr_3454 0.11 -0.6

Or see this region's nucleotide sequence