Experiment: KB with Isoliquiritigenin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3054 and Psyr_3055 overlap by 4 nucleotides Psyr_3055 and Psyr_3056 are separated by 10 nucleotides
Psyr_3054: Psyr_3054 - Choline/ethanolamine kinase:Aminoglycoside phosphotransferase, at 3,651,609 to 3,652,544
_3054
Psyr_3055: Psyr_3055 - Aminoglycoside phosphotransferase, at 3,652,541 to 3,653,494
_3055
Psyr_3056: Psyr_3056 - Amidase, hydantoinase/carbamoylase, at 3,653,505 to 3,654,785
_3056
Position (kb) 3652
3653
3654 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 3651.559 kb on + strand at 3651.568 kb on - strand at 3651.568 kb on - strand at 3651.686 kb on - strand at 3651.691 kb on + strand at 3651.692 kb on - strand at 3651.814 kb on + strand, within Psyr_3054 at 3651.815 kb on - strand, within Psyr_3054 at 3651.815 kb on - strand, within Psyr_3054 at 3651.815 kb on - strand, within Psyr_3054 at 3651.907 kb on + strand, within Psyr_3054 at 3652.030 kb on + strand, within Psyr_3054 at 3652.185 kb on + strand, within Psyr_3054 at 3652.185 kb on + strand, within Psyr_3054 at 3652.185 kb on + strand, within Psyr_3054 at 3652.185 kb on + strand, within Psyr_3054 at 3652.185 kb on + strand, within Psyr_3054 at 3652.186 kb on - strand, within Psyr_3054 at 3652.382 kb on - strand, within Psyr_3054 at 3652.382 kb on - strand, within Psyr_3054 at 3652.382 kb on - strand, within Psyr_3054 at 3652.382 kb on - strand, within Psyr_3054 at 3652.451 kb on - strand at 3652.716 kb on + strand, within Psyr_3055 at 3652.855 kb on - strand, within Psyr_3055 at 3653.328 kb on + strand, within Psyr_3055 at 3653.329 kb on - strand, within Psyr_3055 at 3653.487 kb on + strand at 3653.488 kb on - strand at 3653.488 kb on - strand at 3653.731 kb on - strand, within Psyr_3056 at 3653.731 kb on - strand, within Psyr_3056 at 3653.944 kb on + strand, within Psyr_3056 at 3654.100 kb on - strand, within Psyr_3056 at 3654.473 kb on - strand, within Psyr_3056 at 3654.474 kb on + strand, within Psyr_3056 at 3654.474 kb on + strand, within Psyr_3056 at 3654.474 kb on + strand, within Psyr_3056 at 3654.474 kb on + strand, within Psyr_3056 at 3654.474 kb on + strand, within Psyr_3056 at 3654.474 kb on + strand, within Psyr_3056 at 3654.474 kb on + strand, within Psyr_3056 at 3654.474 kb on + strand, within Psyr_3056 at 3654.474 kb on + strand, within Psyr_3056 at 3654.475 kb on - strand, within Psyr_3056 at 3654.475 kb on - strand, within Psyr_3056 at 3654.475 kb on - strand, within Psyr_3056 at 3654.475 kb on - strand, within Psyr_3056 at 3654.475 kb on - strand, within Psyr_3056 at 3654.475 kb on - strand, within Psyr_3056 at 3654.475 kb on - strand, within Psyr_3056 at 3654.475 kb on - strand, within Psyr_3056
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Isoliquiritigenin 10 mM remove 3,651,559 + +0.1 3,651,568 - +0.3 3,651,568 - +1.9 3,651,686 - -1.2 3,651,691 + +0.6 3,651,692 - +0.0 3,651,814 + Psyr_3054 0.22 +0.8 3,651,815 - Psyr_3054 0.22 -2.2 3,651,815 - Psyr_3054 0.22 -2.5 3,651,815 - Psyr_3054 0.22 -1.0 3,651,907 + Psyr_3054 0.32 +1.8 3,652,030 + Psyr_3054 0.45 +1.2 3,652,185 + Psyr_3054 0.62 -1.3 3,652,185 + Psyr_3054 0.62 -1.8 3,652,185 + Psyr_3054 0.62 -0.3 3,652,185 + Psyr_3054 0.62 +1.2 3,652,185 + Psyr_3054 0.62 -0.8 3,652,186 - Psyr_3054 0.62 +0.5 3,652,382 - Psyr_3054 0.83 -0.9 3,652,382 - Psyr_3054 0.83 +4.5 3,652,382 - Psyr_3054 0.83 -0.8 3,652,382 - Psyr_3054 0.83 -2.0 3,652,451 - -0.6 3,652,716 + Psyr_3055 0.18 +0.8 3,652,855 - Psyr_3055 0.33 +0.2 3,653,328 + Psyr_3055 0.82 +0.0 3,653,329 - Psyr_3055 0.83 +0.8 3,653,487 + +0.2 3,653,488 - -1.3 3,653,488 - +0.4 3,653,731 - Psyr_3056 0.18 -0.1 3,653,731 - Psyr_3056 0.18 -1.4 3,653,944 + Psyr_3056 0.34 -0.3 3,654,100 - Psyr_3056 0.46 -0.4 3,654,473 - Psyr_3056 0.76 -1.1 3,654,474 + Psyr_3056 0.76 +0.2 3,654,474 + Psyr_3056 0.76 -0.2 3,654,474 + Psyr_3056 0.76 +1.0 3,654,474 + Psyr_3056 0.76 -3.1 3,654,474 + Psyr_3056 0.76 -0.4 3,654,474 + Psyr_3056 0.76 -1.2 3,654,474 + Psyr_3056 0.76 -0.5 3,654,474 + Psyr_3056 0.76 -0.1 3,654,474 + Psyr_3056 0.76 +1.5 3,654,475 - Psyr_3056 0.76 -0.3 3,654,475 - Psyr_3056 0.76 +0.9 3,654,475 - Psyr_3056 0.76 -1.8 3,654,475 - Psyr_3056 0.76 +1.2 3,654,475 - Psyr_3056 0.76 -0.5 3,654,475 - Psyr_3056 0.76 +0.4 3,654,475 - Psyr_3056 0.76 -1.6 3,654,475 - Psyr_3056 0.76 +0.7
Or see this region's nucleotide sequence