Experiment: KB with Isoliquiritigenin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0789 and Psyr_0790 are separated by 552 nucleotides Psyr_0790 and Psyr_0791 are separated by 216 nucleotides Psyr_0791 and Psyr_0792 overlap by 4 nucleotides
Psyr_0789: Psyr_0789 - chemotaxis sensory transducer, at 895,430 to 896,647
_0789
Psyr_0790: Psyr_0790 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase, at 897,200 to 898,498
_0790
Psyr_0791: Psyr_0791 - MOSC, at 898,715 to 899,248
_0791
Psyr_0792: Psyr_0792 - conserved hypothetical protein, at 899,245 to 899,874
_0792
Position (kb) 897
898
899 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 896.626 kb on + strand at 896.626 kb on + strand at 896.626 kb on + strand at 896.626 kb on + strand at 896.626 kb on + strand at 896.631 kb on + strand at 896.631 kb on + strand at 896.631 kb on + strand at 896.631 kb on + strand at 896.631 kb on + strand at 896.632 kb on - strand at 896.632 kb on - strand at 896.632 kb on - strand at 896.677 kb on + strand at 896.677 kb on + strand at 896.678 kb on - strand at 896.678 kb on - strand at 896.693 kb on + strand at 896.771 kb on + strand at 896.933 kb on - strand at 897.147 kb on + strand at 897.201 kb on + strand at 897.201 kb on + strand at 897.279 kb on + strand at 897.315 kb on + strand at 897.315 kb on + strand at 897.315 kb on + strand at 897.315 kb on + strand at 897.315 kb on + strand at 897.316 kb on - strand at 897.316 kb on - strand at 897.316 kb on - strand at 897.316 kb on - strand at 897.316 kb on - strand at 897.316 kb on - strand at 897.316 kb on - strand at 897.426 kb on + strand, within Psyr_0790 at 897.426 kb on + strand, within Psyr_0790 at 897.426 kb on + strand, within Psyr_0790 at 897.426 kb on + strand, within Psyr_0790 at 897.426 kb on + strand, within Psyr_0790 at 897.426 kb on + strand, within Psyr_0790 at 897.426 kb on + strand, within Psyr_0790 at 897.426 kb on + strand, within Psyr_0790 at 897.426 kb on + strand, within Psyr_0790 at 897.426 kb on + strand, within Psyr_0790 at 897.426 kb on + strand, within Psyr_0790 at 897.427 kb on - strand, within Psyr_0790 at 897.427 kb on - strand, within Psyr_0790 at 897.427 kb on - strand, within Psyr_0790 at 897.427 kb on - strand, within Psyr_0790 at 897.427 kb on - strand, within Psyr_0790 at 897.427 kb on - strand, within Psyr_0790 at 897.427 kb on - strand, within Psyr_0790 at 897.427 kb on - strand, within Psyr_0790 at 897.427 kb on - strand, within Psyr_0790 at 897.427 kb on - strand, within Psyr_0790 at 897.427 kb on - strand, within Psyr_0790 at 897.432 kb on + strand, within Psyr_0790 at 897.432 kb on + strand, within Psyr_0790 at 897.432 kb on + strand, within Psyr_0790 at 897.432 kb on + strand, within Psyr_0790 at 897.432 kb on + strand, within Psyr_0790 at 897.433 kb on - strand, within Psyr_0790 at 897.433 kb on - strand, within Psyr_0790 at 897.578 kb on - strand, within Psyr_0790 at 897.679 kb on + strand, within Psyr_0790 at 897.680 kb on - strand, within Psyr_0790 at 897.909 kb on + strand, within Psyr_0790 at 898.035 kb on + strand, within Psyr_0790 at 898.035 kb on + strand, within Psyr_0790 at 898.305 kb on + strand, within Psyr_0790 at 898.305 kb on + strand, within Psyr_0790 at 898.305 kb on + strand, within Psyr_0790 at 898.305 kb on + strand, within Psyr_0790 at 898.306 kb on - strand, within Psyr_0790 at 898.306 kb on - strand, within Psyr_0790 at 898.306 kb on - strand, within Psyr_0790 at 898.306 kb on - strand, within Psyr_0790 at 898.306 kb on - strand, within Psyr_0790 at 898.306 kb on - strand, within Psyr_0790 at 898.323 kb on + strand, within Psyr_0790 at 898.324 kb on - strand, within Psyr_0790 at 898.324 kb on - strand, within Psyr_0790 at 898.372 kb on + strand at 898.372 kb on + strand at 898.373 kb on - strand at 898.373 kb on - strand at 898.480 kb on + strand at 898.486 kb on + strand at 898.486 kb on + strand at 898.487 kb on - strand at 898.487 kb on - strand at 898.487 kb on - strand at 898.487 kb on - strand at 898.505 kb on + strand at 898.506 kb on - strand at 898.565 kb on + strand at 898.565 kb on + strand at 898.584 kb on - strand at 898.655 kb on + strand at 898.656 kb on - strand at 898.656 kb on - strand at 898.704 kb on + strand at 898.805 kb on + strand, within Psyr_0791 at 898.806 kb on - strand, within Psyr_0791 at 899.248 kb on + strand at 899.248 kb on + strand at 899.248 kb on + strand at 899.248 kb on + strand at 899.249 kb on - strand at 899.249 kb on - strand at 899.384 kb on + strand, within Psyr_0792 at 899.385 kb on - strand, within Psyr_0792
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Isoliquiritigenin 10 mM remove 896,626 + +0.4 896,626 + +1.1 896,626 + -0.2 896,626 + -1.4 896,626 + +0.8 896,631 + +0.6 896,631 + -1.1 896,631 + +0.7 896,631 + -1.4 896,631 + -1.3 896,632 - +0.6 896,632 - +1.2 896,632 - +0.1 896,677 + -0.7 896,677 + -1.2 896,678 - +1.1 896,678 - -0.3 896,693 + +0.0 896,771 + +0.9 896,933 - +2.6 897,147 + +0.4 897,201 + -0.3 897,201 + -0.4 897,279 + +1.8 897,315 + -2.4 897,315 + -1.7 897,315 + -1.7 897,315 + +0.5 897,315 + -0.4 897,316 - +0.6 897,316 - -0.9 897,316 - +0.7 897,316 - +0.1 897,316 - +2.0 897,316 - -0.1 897,316 - -1.2 897,426 + Psyr_0790 0.17 -0.3 897,426 + Psyr_0790 0.17 +1.1 897,426 + Psyr_0790 0.17 -0.6 897,426 + Psyr_0790 0.17 -0.5 897,426 + Psyr_0790 0.17 -0.8 897,426 + Psyr_0790 0.17 +1.0 897,426 + Psyr_0790 0.17 +0.3 897,426 + Psyr_0790 0.17 +0.7 897,426 + Psyr_0790 0.17 -0.5 897,426 + Psyr_0790 0.17 +3.9 897,426 + Psyr_0790 0.17 +0.4 897,427 - Psyr_0790 0.17 -0.9 897,427 - Psyr_0790 0.17 -0.0 897,427 - Psyr_0790 0.17 +0.0 897,427 - Psyr_0790 0.17 -0.1 897,427 - Psyr_0790 0.17 -0.6 897,427 - Psyr_0790 0.17 -0.1 897,427 - Psyr_0790 0.17 +1.6 897,427 - Psyr_0790 0.17 +0.1 897,427 - Psyr_0790 0.17 -0.4 897,427 - Psyr_0790 0.17 +0.0 897,427 - Psyr_0790 0.17 +0.0 897,432 + Psyr_0790 0.18 +0.4 897,432 + Psyr_0790 0.18 -0.1 897,432 + Psyr_0790 0.18 +0.2 897,432 + Psyr_0790 0.18 -0.4 897,432 + Psyr_0790 0.18 -0.7 897,433 - Psyr_0790 0.18 -0.3 897,433 - Psyr_0790 0.18 +0.1 897,578 - Psyr_0790 0.29 -2.2 897,679 + Psyr_0790 0.37 -0.0 897,680 - Psyr_0790 0.37 -0.2 897,909 + Psyr_0790 0.55 +0.3 898,035 + Psyr_0790 0.64 -0.0 898,035 + Psyr_0790 0.64 +0.8 898,305 + Psyr_0790 0.85 +2.1 898,305 + Psyr_0790 0.85 -1.0 898,305 + Psyr_0790 0.85 +0.2 898,305 + Psyr_0790 0.85 -0.8 898,306 - Psyr_0790 0.85 +1.2 898,306 - Psyr_0790 0.85 +0.0 898,306 - Psyr_0790 0.85 -0.3 898,306 - Psyr_0790 0.85 +1.3 898,306 - Psyr_0790 0.85 -3.0 898,306 - Psyr_0790 0.85 -1.4 898,323 + Psyr_0790 0.86 +2.1 898,324 - Psyr_0790 0.87 -0.3 898,324 - Psyr_0790 0.87 -0.9 898,372 + -0.8 898,372 + -0.2 898,373 - +0.9 898,373 - -0.4 898,480 + +1.0 898,486 + +2.3 898,486 + -0.1 898,487 - -0.2 898,487 - -1.0 898,487 - -3.2 898,487 - +0.4 898,505 + -0.0 898,506 - -1.3 898,565 + -0.0 898,565 + +1.2 898,584 - -0.4 898,655 + +1.4 898,656 - -0.3 898,656 - +0.1 898,704 + +1.1 898,805 + Psyr_0791 0.17 -1.6 898,806 - Psyr_0791 0.17 -3.7 899,248 + +0.7 899,248 + -1.4 899,248 + -2.0 899,248 + -0.3 899,249 - -0.5 899,249 - +0.1 899,384 + Psyr_0792 0.22 +0.1 899,385 - Psyr_0792 0.22 +0.5
Or see this region's nucleotide sequence