Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3158

Experiment: BHIS with Irgasan 0.0125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Irgasan 0.0125 mM
4,025,037	+		BT3157	0.51	-0.5
4,025,038	-		BT3157	0.51	-0.8
4,025,078	+		BT3157	0.53	-2.5
4,025,079	-		BT3157	0.54	+1.5
4,025,114	+		BT3157	0.55	-1.0
4,025,115	-		BT3157	0.55	-1.9
4,025,115	-		BT3157	0.55	+2.8
4,025,115	-		BT3157	0.55	-0.6
4,025,115	-		BT3157	0.55	-0.1
4,025,116	+		BT3157	0.55	-1.0
4,025,116	+		BT3157	0.55	-1.4
4,025,117	-		BT3157	0.55	-2.6
4,025,124	+		BT3157	0.56	-0.4
4,025,124	+		BT3157	0.56	-1.7
4,025,124	+		BT3157	0.56	-0.0
4,025,125	-		BT3157	0.56	-1.2
4,025,150	-		BT3157	0.57	-2.6
4,025,154	+		BT3157	0.57	-3.6
4,025,212	-		BT3157	0.60	-0.3
4,025,251	+		BT3157	0.62	-1.6
4,025,252	-		BT3157	0.62	-1.0
4,025,254	-		BT3157	0.62	-2.8
4,025,282	+		BT3157	0.64	-1.3
4,025,312	-		BT3157	0.65	-2.7
4,025,344	+		BT3157	0.67	-1.2
4,025,344	+		BT3157	0.67	-2.2
4,025,359	-		BT3157	0.67	-0.0
4,025,384	+		BT3157	0.69	-0.6
4,025,391	+		BT3157	0.69	-1.8
4,025,396	-		BT3157	0.69	-2.6
4,025,428	-				-0.0
4,025,447	-		BT3157	0.72	-2.3
4,025,483	+		BT3157	0.74	+0.4
4,025,501	+		BT3157	0.74	-2.8
4,025,502	-		BT3157	0.75	-0.0
4,025,506	+		BT3157	0.75	-2.2
4,025,512	+		BT3157	0.75	-1.0
4,025,526	+		BT3157	0.76	-3.2
4,025,546	-		BT3157	0.77	-2.0
4,025,549	+		BT3157	0.77	-1.4
4,025,549	+		BT3157	0.77	-1.6
4,025,549	+		BT3157	0.77	-0.6
4,025,549	+		BT3157	0.77	-1.9
4,025,550	-		BT3157	0.77	-1.1
4,025,550	-		BT3157	0.77	-1.6
4,025,555	-		BT3157	0.77	-0.4
4,025,589	+		BT3157	0.79	-1.0
4,025,592	+		BT3157	0.79	-1.0
4,025,593	-		BT3157	0.79	-0.3
4,025,593	-		BT3157	0.79	-3.4
4,025,593	-		BT3157	0.79	-1.6
4,025,597	+		BT3157	0.79	-0.0
4,025,613	+		BT3157	0.80	-1.0
4,025,613	+		BT3157	0.80	-0.2
4,025,613	+		BT3157	0.80	-0.0
4,025,661	-		BT3157	0.82	-1.0
4,025,681	+		BT3157	0.83	-2.0
4,025,681	+		BT3157	0.83	-1.0
4,025,682	-		BT3157	0.83	-0.3
4,025,682	-		BT3157	0.83	-0.1
4,025,682	-		BT3157	0.83	-3.2
4,025,682	-		BT3157	0.83	-1.0
4,025,697	-		BT3157	0.84	-2.0
4,025,757	+		BT3157	0.87	-1.0
4,025,757	+		BT3157	0.87	-1.5
4,025,775	+		BT3157	0.88	-0.9
4,025,806	+		BT3157	0.90	-2.4
4,025,940	+				-0.4
4,025,975	+				-0.8
4,026,053	+				-0.0
4,026,054	-				-1.0
4,026,056	+				-1.4
4,026,057	-				+1.5
4,026,058	+				+1.0
4,026,058	+				-0.0
4,026,058	+				-2.4
4,026,059	-				-0.3
4,026,060	+				+1.0
4,026,060	+				-1.1
4,026,061	-				-1.9
4,026,088	-				-1.4
4,026,156	+		BT3158	0.10	-1.8
4,026,156	+		BT3158	0.10	-2.5
4,026,156	+		BT3158	0.10	-0.2
4,026,157	-		BT3158	0.10	-1.6
4,026,171	-		BT3158	0.11	-3.0
4,026,234	-		BT3158	0.16	-0.6
4,026,234	-		BT3158	0.16	-1.2
4,026,234	-		BT3158	0.16	-1.7
4,026,234	-		BT3158	0.16	+0.5
4,026,236	-		BT3158	0.17	-1.3
4,026,248	+		BT3158	0.18	-1.5
4,026,346	-		BT3158	0.26	-2.4
4,026,348	+		BT3158	0.26	-0.6
4,026,389	-		BT3158	0.29	-0.0
4,026,406	-		BT3158	0.31	-0.0
4,026,422	+		BT3158	0.32	-0.6
4,026,422	+		BT3158	0.32	-2.6
4,026,423	-		BT3158	0.32	-1.6
4,026,450	+		BT3158	0.34	-0.8
4,026,451	-		BT3158	0.34	-1.0
4,026,451	-		BT3158	0.34	-0.3
4,026,474	-		BT3158	0.36	+0.4
4,026,474	-		BT3158	0.36	-1.0
4,026,474	-		BT3158	0.36	-1.0
4,026,477	+		BT3158	0.37	-0.8
4,026,478	-		BT3158	0.37	+0.5
4,026,481	+		BT3158	0.37	+1.0
4,026,482	-		BT3158	0.37	-1.1
4,026,484	+		BT3158	0.37	-1.0
4,026,504	-		BT3158	0.39	-2.0
4,026,552	+		BT3158	0.43	+1.0
4,026,553	-		BT3158	0.43	-0.8
4,026,559	+		BT3158	0.43	+1.0
4,026,559	+		BT3158	0.43	-0.0
4,026,566	+		BT3158	0.44	-1.7
4,026,648	+		BT3158	0.51	-0.0
4,026,649	-		BT3158	0.51	+1.5
4,026,650	+		BT3158	0.51	-2.4
4,026,672	-		BT3158	0.53	-3.0
4,026,696	-		BT3158	0.55	+0.7
4,026,748	+		BT3158	0.59	+0.1
4,026,748	+		BT3158	0.59	-0.8
4,026,750	+		BT3158	0.59	-2.0
4,026,750	+		BT3158	0.59	-0.0
4,026,750	+		BT3158	0.59	-1.4
4,026,751	-		BT3158	0.59	-1.0
4,026,752	-		BT3158	0.59	+0.1
4,026,787	-		BT3158	0.62	+1.2
4,026,807	+		BT3158	0.64	+1.8
4,026,808	-		BT3158	0.64	-1.0
4,026,822	-		BT3158	0.65	-0.0
4,026,898	-		BT3158	0.71	+1.4
4,026,934	+		BT3158	0.74	-0.8
4,026,935	-		BT3158	0.74	-1.8
4,026,938	+		BT3158	0.75	-3.2
4,026,938	+		BT3158	0.75	-1.6
4,026,938	+		BT3158	0.75	-0.4
4,026,939	-		BT3158	0.75	-2.0
4,026,939	-		BT3158	0.75	-1.6
4,026,941	+		BT3158	0.75	+2.1
4,026,941	+				-1.0
4,026,942	-		BT3158	0.75	-3.9
4,026,945	-		BT3158	0.75	-1.0
4,026,993	+		BT3158	0.79	-0.8
4,027,093	+		BT3158	0.88	-0.6
4,027,094	-		BT3158	0.88	-0.4
4,027,096	-		BT3158	0.88	-1.1
4,027,100	+		BT3158	0.88	-1.6
4,027,101	-		BT3158	0.88	-0.0
4,027,106	-		BT3158	0.89	+0.6
4,027,106	-		BT3158	0.89	-0.5
4,027,138	+				-0.8
4,027,154	+				-1.8
4,027,154	+				-1.0
4,027,205	-				-0.0
4,027,278	+				-2.8
4,027,279	-				-1.0
4,027,349	-				-3.5
4,027,349	-				+1.5
4,027,372	+				-1.1
4,027,444	+		BT3159	0.14	-0.8
4,027,444	+		BT3159	0.14	-0.4
4,027,445	-		BT3159	0.14	-0.9
4,027,451	+		BT3159	0.14	+0.5
4,027,523	+		BT3159	0.20	+0.5
4,027,524	-		BT3159	0.20	-0.0
4,027,606	+		BT3159	0.26	-0.0
4,027,606	+		BT3159	0.26	-2.6
4,027,607	-		BT3159	0.27	-1.0
4,027,630	-		BT3159	0.28	-2.4
4,027,643	+		BT3159	0.29	+1.0
4,027,643	+		BT3159	0.29	-1.0
4,027,667	+		BT3159	0.31	-3.0
4,027,669	+		BT3159	0.31	-0.6
4,027,669	+		BT3159	0.31	-1.0
4,027,702	-		BT3159	0.34	-0.0
4,027,704	+		BT3159	0.34	-0.6
4,027,704	+		BT3159	0.34	-0.0
4,027,757	+		BT3159	0.38	-0.1
4,027,758	-		BT3159	0.38	-1.0
4,027,784	+		BT3159	0.40	-0.5
4,027,785	-		BT3159	0.40	+0.1
4,027,802	+		BT3159	0.42	-1.6
4,027,805	+		BT3159	0.42	-1.6
4,027,805	+		BT3159	0.42	-1.6
4,027,823	-		BT3159	0.43	-0.5
4,027,823	-		BT3159	0.43	+1.0
4,027,823	-		BT3159	0.43	-0.9
4,027,875	+		BT3159	0.47	-2.0
4,027,876	-		BT3159	0.47	-1.6
4,027,896	+		BT3159	0.49	-1.0
4,027,897	-		BT3159	0.49	-2.0
4,027,918	+		BT3159	0.51	-1.7
4,027,923	+		BT3159	0.51	-1.0
4,027,923	+		BT3159	0.51	+1.0
4,027,923	+		BT3159	0.51	-1.3
4,027,926	+		BT3159	0.51	-2.4
4,027,926	+		BT3159	0.51	-1.1
4,027,926	+		BT3159	0.51	+1.1
4,027,927	-		BT3159	0.51	-0.3
4,027,928	+		BT3159	0.51	-1.0
4,027,928	+		BT3159	0.51	-0.0
4,027,928	+		BT3159	0.51	-2.3
4,027,928	+		BT3159	0.51	-1.1
4,027,928	+		BT3159	0.51	-4.4
4,027,929	-		BT3159	0.51	-1.0
4,027,930	+		BT3159	0.52	-2.0
4,027,963	+		BT3159	0.54	-1.5
4,027,975	-		BT3159	0.55	-0.0
4,028,024	+		BT3159	0.59	-1.4
4,028,036	-		BT3159	0.60	-0.3
4,028,036	-		BT3159	0.60	+0.1
4,028,040	+		BT3159	0.60	-1.2
4,028,075	+		BT3159	0.63	+2.0
4,028,075	+		BT3159	0.63	+2.0
4,028,076	-		BT3159	0.63	+0.1
4,028,165	-		BT3159	0.70	-2.5