Experiment: BHIS with Irgasan 0.0125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0562 and BT0563 are separated by 2 nucleotides BT0563 and BT0564 are separated by 11 nucleotides
BT0562: BT0562 - putative ABC transporter ATP-binding protein (NCBI ptt file), at 698,022 to 699,491
BT0562
BT0563: BT0563 - putative ABC transporter ATP-binding protein or permease protein (NCBI ptt file), at 699,494 to 700,597
BT0563
BT0564: BT0564 - putative ABC transporter permease protein (NCBI ptt file), at 700,609 to 701,724
BT0564
Position (kb) 699
700
701 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 698.514 kb on - strand, within BT0562 at 698.606 kb on + strand, within BT0562 at 698.607 kb on - strand, within BT0562 at 698.877 kb on - strand, within BT0562 at 698.894 kb on + strand, within BT0562 at 698.946 kb on + strand, within BT0562 at 698.994 kb on - strand, within BT0562 at 699.313 kb on + strand, within BT0562 at 699.314 kb on - strand, within BT0562 at 699.331 kb on - strand, within BT0562 at 699.505 kb on + strand at 699.505 kb on + strand at 699.593 kb on - strand at 699.775 kb on - strand, within BT0563 at 699.778 kb on + strand, within BT0563 at 699.819 kb on - strand, within BT0563 at 699.820 kb on + strand, within BT0563 at 699.886 kb on + strand, within BT0563 at 699.887 kb on - strand, within BT0563 at 699.890 kb on + strand, within BT0563 at 699.890 kb on + strand, within BT0563 at 699.980 kb on + strand, within BT0563 at 700.107 kb on + strand, within BT0563 at 700.159 kb on - strand, within BT0563 at 700.164 kb on - strand, within BT0563 at 700.324 kb on + strand, within BT0563 at 700.461 kb on - strand, within BT0563 at 700.529 kb on - strand at 700.529 kb on - strand at 700.558 kb on + strand at 700.608 kb on + strand at 700.734 kb on - strand, within BT0564 at 700.753 kb on - strand, within BT0564 at 700.797 kb on + strand, within BT0564 at 700.812 kb on + strand, within BT0564 at 700.847 kb on - strand, within BT0564 at 700.891 kb on - strand, within BT0564 at 700.950 kb on - strand, within BT0564 at 701.026 kb on + strand, within BT0564 at 701.039 kb on + strand, within BT0564 at 701.226 kb on - strand, within BT0564 at 701.244 kb on + strand, within BT0564 at 701.245 kb on - strand, within BT0564 at 701.297 kb on - strand, within BT0564 at 701.411 kb on + strand, within BT0564 at 701.542 kb on - strand, within BT0564 at 701.570 kb on - strand, within BT0564
Per-strain Table
Position Strand Gene LocusTag Fraction BHIS with Irgasan 0.0125 mM remove 698,514 - BT0562 0.33 -2.9 698,606 + BT0562 0.40 -0.4 698,607 - BT0562 0.40 -2.2 698,877 - BT0562 0.58 +0.3 698,894 + BT0562 0.59 -2.7 698,946 + BT0562 0.63 -1.9 698,994 - BT0562 0.66 +0.7 699,313 + BT0562 0.88 +0.1 699,314 - BT0562 0.88 +0.1 699,331 - BT0562 0.89 +2.7 699,505 + -0.9 699,505 + +0.1 699,593 - -1.4 699,775 - BT0563 0.25 -2.5 699,778 + BT0563 0.26 -3.4 699,819 - BT0563 0.29 -1.5 699,820 + BT0563 0.30 -0.9 699,886 + BT0563 0.36 -0.9 699,887 - BT0563 0.36 -0.9 699,890 + BT0563 0.36 -1.5 699,890 + BT0563 0.36 -1.1 699,980 + BT0563 0.44 -2.2 700,107 + BT0563 0.56 -0.9 700,159 - BT0563 0.60 -3.8 700,164 - BT0563 0.61 -0.9 700,324 + BT0563 0.75 -0.9 700,461 - BT0563 0.88 -1.9 700,529 - -0.3 700,529 - +0.9 700,558 + -0.9 700,608 + +0.8 700,734 - BT0564 0.11 -0.9 700,753 - BT0564 0.13 +0.1 700,797 + BT0564 0.17 -2.2 700,812 + BT0564 0.18 +0.1 700,847 - BT0564 0.21 +0.3 700,891 - BT0564 0.25 -0.7 700,950 - BT0564 0.31 +1.7 701,026 + BT0564 0.37 -0.3 701,039 + BT0564 0.39 +0.1 701,226 - BT0564 0.55 -2.2 701,244 + BT0564 0.57 -0.9 701,245 - BT0564 0.57 +2.1 701,297 - BT0564 0.62 -2.5 701,411 + BT0564 0.72 -2.1 701,542 - BT0564 0.84 -1.5 701,570 - BT0564 0.86 -1.1
Or see this region's nucleotide sequence