Experiment: MoLS4 with L-Alanine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVUA0061 and DVUA0062 overlap by 4 nucleotides DVUA0062 and DVUA0063 are separated by 56 nucleotides
DVUA0061: DVUA0061 - membrane protein, putative (TIGR), at 75,835 to 77,187
DVUA0061
DVUA0062: DVUA0062 - conserved domain protein (TIGR), at 77,184 to 78,479
DVUA0062
DVUA0063: DVUA0063 - Orn/DAP/Arg family decarboxylase (TIGR), at 78,536 to 80,092
DVUA0063
Position (kb) 77
78
79 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 76.275 kb on - strand, within DVUA0061 at 76.295 kb on + strand, within DVUA0061 at 76.318 kb on - strand, within DVUA0061 at 76.322 kb on + strand, within DVUA0061 at 76.382 kb on - strand, within DVUA0061 at 76.423 kb on - strand, within DVUA0061 at 76.458 kb on - strand, within DVUA0061 at 76.554 kb on + strand, within DVUA0061 at 76.597 kb on - strand, within DVUA0061 at 76.607 kb on - strand, within DVUA0061 at 76.637 kb on + strand, within DVUA0061 at 76.637 kb on + strand, within DVUA0061 at 76.645 kb on - strand, within DVUA0061 at 76.661 kb on + strand, within DVUA0061 at 76.661 kb on + strand, within DVUA0061 at 76.661 kb on + strand, within DVUA0061 at 76.732 kb on + strand, within DVUA0061 at 76.740 kb on - strand, within DVUA0061 at 76.740 kb on - strand, within DVUA0061 at 76.740 kb on - strand, within DVUA0061 at 76.745 kb on - strand, within DVUA0061 at 76.844 kb on + strand, within DVUA0061 at 76.864 kb on - strand, within DVUA0061 at 76.887 kb on - strand, within DVUA0061 at 76.887 kb on - strand, within DVUA0061 at 76.887 kb on - strand, within DVUA0061 at 76.898 kb on + strand, within DVUA0061 at 76.898 kb on + strand, within DVUA0061 at 76.906 kb on - strand, within DVUA0061 at 76.906 kb on - strand, within DVUA0061 at 76.916 kb on - strand, within DVUA0061 at 76.932 kb on - strand, within DVUA0061 at 77.088 kb on - strand at 77.286 kb on - strand at 77.326 kb on + strand, within DVUA0062 at 77.326 kb on + strand, within DVUA0062 at 77.402 kb on - strand, within DVUA0062 at 77.409 kb on - strand, within DVUA0062 at 77.424 kb on - strand, within DVUA0062 at 77.494 kb on - strand, within DVUA0062 at 77.576 kb on + strand, within DVUA0062 at 77.576 kb on + strand, within DVUA0062 at 77.639 kb on + strand, within DVUA0062 at 77.752 kb on - strand, within DVUA0062 at 77.772 kb on + strand, within DVUA0062 at 77.813 kb on - strand, within DVUA0062 at 77.850 kb on - strand, within DVUA0062 at 77.884 kb on - strand, within DVUA0062 at 77.922 kb on + strand, within DVUA0062 at 78.033 kb on + strand, within DVUA0062 at 78.092 kb on - strand, within DVUA0062 at 78.097 kb on - strand, within DVUA0062 at 78.236 kb on + strand, within DVUA0062 at 78.241 kb on - strand, within DVUA0062 at 78.261 kb on - strand, within DVUA0062 at 78.311 kb on + strand, within DVUA0062 at 78.547 kb on - strand at 78.633 kb on + strand at 78.794 kb on - strand, within DVUA0063 at 78.808 kb on + strand, within DVUA0063 at 78.828 kb on + strand, within DVUA0063 at 78.848 kb on - strand, within DVUA0063 at 78.848 kb on - strand, within DVUA0063 at 78.865 kb on + strand, within DVUA0063 at 79.093 kb on - strand, within DVUA0063 at 79.138 kb on - strand, within DVUA0063 at 79.160 kb on + strand, within DVUA0063 at 79.289 kb on + strand, within DVUA0063 at 79.318 kb on - strand, within DVUA0063 at 79.324 kb on + strand, within DVUA0063 at 79.449 kb on + strand, within DVUA0063 at 79.449 kb on + strand, within DVUA0063 at 79.454 kb on + strand, within DVUA0063
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Alanine as nutrient 10mM remove 76,275 - DVUA0061 0.33 -1.8 76,295 + DVUA0061 0.34 -0.1 76,318 - DVUA0061 0.36 -1.5 76,322 + DVUA0061 0.36 +0.3 76,382 - DVUA0061 0.40 +0.2 76,423 - DVUA0061 0.43 +0.1 76,458 - DVUA0061 0.46 -0.6 76,554 + DVUA0061 0.53 +0.7 76,597 - DVUA0061 0.56 +0.6 76,607 - DVUA0061 0.57 -0.2 76,637 + DVUA0061 0.59 +1.6 76,637 + DVUA0061 0.59 -1.1 76,645 - DVUA0061 0.60 +0.1 76,661 + DVUA0061 0.61 -0.9 76,661 + DVUA0061 0.61 +2.8 76,661 + DVUA0061 0.61 +2.2 76,732 + DVUA0061 0.66 -1.6 76,740 - DVUA0061 0.67 +0.1 76,740 - DVUA0061 0.67 +0.0 76,740 - DVUA0061 0.67 -0.8 76,745 - DVUA0061 0.67 -1.3 76,844 + DVUA0061 0.75 -1.7 76,864 - DVUA0061 0.76 -0.2 76,887 - DVUA0061 0.78 -1.4 76,887 - DVUA0061 0.78 +0.0 76,887 - DVUA0061 0.78 -0.5 76,898 + DVUA0061 0.79 -1.0 76,898 + DVUA0061 0.79 -0.7 76,906 - DVUA0061 0.79 -1.3 76,906 - DVUA0061 0.79 -0.3 76,916 - DVUA0061 0.80 +0.8 76,932 - DVUA0061 0.81 -0.0 77,088 - -1.3 77,286 - -0.5 77,326 + DVUA0062 0.11 -0.1 77,326 + DVUA0062 0.11 -1.6 77,402 - DVUA0062 0.17 -2.0 77,409 - DVUA0062 0.17 -1.1 77,424 - DVUA0062 0.19 -1.4 77,494 - DVUA0062 0.24 -0.9 77,576 + DVUA0062 0.30 +0.1 77,576 + DVUA0062 0.30 -0.1 77,639 + DVUA0062 0.35 -0.4 77,752 - DVUA0062 0.44 +0.6 77,772 + DVUA0062 0.45 +0.8 77,813 - DVUA0062 0.49 -0.7 77,850 - DVUA0062 0.51 +0.1 77,884 - DVUA0062 0.54 +1.6 77,922 + DVUA0062 0.57 -0.1 78,033 + DVUA0062 0.66 -0.4 78,092 - DVUA0062 0.70 -0.3 78,097 - DVUA0062 0.70 -0.2 78,236 + DVUA0062 0.81 -1.7 78,241 - DVUA0062 0.82 -0.4 78,261 - DVUA0062 0.83 -0.9 78,311 + DVUA0062 0.87 -2.8 78,547 - -0.2 78,633 + +0.2 78,794 - DVUA0063 0.17 -0.1 78,808 + DVUA0063 0.17 -0.1 78,828 + DVUA0063 0.19 +0.8 78,848 - DVUA0063 0.20 -0.4 78,848 - DVUA0063 0.20 -0.6 78,865 + DVUA0063 0.21 -1.9 79,093 - DVUA0063 0.36 +0.0 79,138 - DVUA0063 0.39 +0.3 79,160 + DVUA0063 0.40 -0.7 79,289 + DVUA0063 0.48 -1.5 79,318 - DVUA0063 0.50 -1.5 79,324 + DVUA0063 0.51 -1.2 79,449 + DVUA0063 0.59 +0.2 79,449 + DVUA0063 0.59 -0.5 79,454 + DVUA0063 0.59 -1.5
Or see this region's nucleotide sequence