Experiment: MoLS4 with L-Alanine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVUA0064 and DVUA0065 overlap by 4 nucleotides DVUA0065 and DVUA0066 are separated by 453 nucleotides
DVUA0064: DVUA0064 - conserved domain protein (TIGR), at 81,164 to 82,885
DVUA0064
DVUA0065: DVUA0065 - sensor histidine kinase (TIGR), at 82,882 to 84,918
DVUA0065
DVUA0066: DVUA0066 - phospholipase, patatin family (TIGR), at 85,372 to 86,784
DVUA0066
Position (kb) 82
83
84
85 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 81.938 kb on - strand, within DVUA0064 at 81.970 kb on - strand, within DVUA0064 at 82.022 kb on + strand, within DVUA0064 at 82.045 kb on - strand, within DVUA0064 at 82.066 kb on - strand, within DVUA0064 at 82.202 kb on - strand, within DVUA0064 at 82.436 kb on + strand, within DVUA0064 at 82.438 kb on - strand, within DVUA0064 at 82.457 kb on + strand, within DVUA0064 at 82.473 kb on + strand, within DVUA0064 at 82.475 kb on + strand, within DVUA0064 at 82.499 kb on + strand, within DVUA0064 at 82.529 kb on + strand, within DVUA0064 at 82.529 kb on + strand, within DVUA0064 at 82.531 kb on + strand, within DVUA0064 at 82.531 kb on + strand, within DVUA0064 at 82.719 kb on - strand at 82.816 kb on + strand at 82.878 kb on + strand at 82.920 kb on - strand at 83.055 kb on - strand at 83.123 kb on - strand, within DVUA0065 at 83.272 kb on - strand, within DVUA0065 at 83.435 kb on + strand, within DVUA0065 at 83.443 kb on - strand, within DVUA0065 at 83.443 kb on - strand, within DVUA0065 at 83.471 kb on + strand, within DVUA0065 at 83.481 kb on + strand, within DVUA0065 at 83.639 kb on - strand, within DVUA0065 at 83.756 kb on - strand, within DVUA0065 at 83.793 kb on + strand, within DVUA0065 at 83.811 kb on - strand, within DVUA0065 at 83.836 kb on - strand, within DVUA0065 at 83.870 kb on + strand, within DVUA0065 at 83.933 kb on + strand, within DVUA0065 at 83.933 kb on + strand, within DVUA0065 at 83.938 kb on + strand, within DVUA0065 at 83.961 kb on - strand, within DVUA0065 at 84.100 kb on + strand, within DVUA0065 at 84.128 kb on + strand, within DVUA0065 at 84.130 kb on + strand, within DVUA0065 at 84.154 kb on - strand, within DVUA0065 at 84.191 kb on + strand, within DVUA0065 at 84.193 kb on + strand, within DVUA0065 at 84.238 kb on - strand, within DVUA0065 at 84.238 kb on - strand, within DVUA0065 at 84.238 kb on - strand, within DVUA0065 at 84.376 kb on + strand, within DVUA0065 at 84.386 kb on - strand, within DVUA0065 at 84.599 kb on + strand, within DVUA0065 at 84.599 kb on + strand, within DVUA0065 at 84.623 kb on + strand, within DVUA0065 at 84.668 kb on + strand, within DVUA0065 at 84.685 kb on + strand, within DVUA0065 at 84.712 kb on + strand, within DVUA0065 at 84.712 kb on + strand, within DVUA0065 at 84.713 kb on - strand, within DVUA0065 at 84.762 kb on + strand at 84.762 kb on + strand at 84.762 kb on + strand at 84.762 kb on + strand at 84.770 kb on - strand at 85.024 kb on - strand at 85.182 kb on + strand at 85.198 kb on - strand at 85.248 kb on + strand at 85.355 kb on - strand at 85.355 kb on - strand at 85.424 kb on - strand at 85.649 kb on - strand, within DVUA0066 at 85.755 kb on + strand, within DVUA0066 at 85.807 kb on + strand, within DVUA0066 at 85.807 kb on - strand, within DVUA0066 at 85.809 kb on + strand, within DVUA0066 at 85.817 kb on - strand, within DVUA0066 at 85.886 kb on - strand, within DVUA0066
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Alanine as nutrient 10mM remove 81,938 - DVUA0064 0.45 +0.2 81,970 - DVUA0064 0.47 -1.9 82,022 + DVUA0064 0.50 -0.0 82,045 - DVUA0064 0.51 +1.2 82,066 - DVUA0064 0.52 -0.1 82,202 - DVUA0064 0.60 +0.8 82,436 + DVUA0064 0.74 -1.7 82,438 - DVUA0064 0.74 -1.3 82,457 + DVUA0064 0.75 +0.1 82,473 + DVUA0064 0.76 -0.1 82,475 + DVUA0064 0.76 -0.1 82,499 + DVUA0064 0.78 +2.8 82,529 + DVUA0064 0.79 -0.1 82,529 + DVUA0064 0.79 +0.6 82,531 + DVUA0064 0.79 +0.0 82,531 + DVUA0064 0.79 +0.5 82,719 - +0.9 82,816 + +0.0 82,878 + -0.1 82,920 - +0.4 83,055 - -1.2 83,123 - DVUA0065 0.12 +0.0 83,272 - DVUA0065 0.19 -1.1 83,435 + DVUA0065 0.27 -1.2 83,443 - DVUA0065 0.28 -0.5 83,443 - DVUA0065 0.28 -1.1 83,471 + DVUA0065 0.29 -0.4 83,481 + DVUA0065 0.29 +0.1 83,639 - DVUA0065 0.37 -1.6 83,756 - DVUA0065 0.43 -0.1 83,793 + DVUA0065 0.45 -1.3 83,811 - DVUA0065 0.46 +0.3 83,836 - DVUA0065 0.47 -0.6 83,870 + DVUA0065 0.49 -1.0 83,933 + DVUA0065 0.52 +0.0 83,933 + DVUA0065 0.52 -0.1 83,938 + DVUA0065 0.52 -0.0 83,961 - DVUA0065 0.53 -0.2 84,100 + DVUA0065 0.60 +0.3 84,128 + DVUA0065 0.61 -1.3 84,130 + DVUA0065 0.61 -0.1 84,154 - DVUA0065 0.62 -1.4 84,191 + DVUA0065 0.64 -1.5 84,193 + DVUA0065 0.64 +0.6 84,238 - DVUA0065 0.67 -0.1 84,238 - DVUA0065 0.67 -0.5 84,238 - DVUA0065 0.67 -1.6 84,376 + DVUA0065 0.73 +0.2 84,386 - DVUA0065 0.74 -0.2 84,599 + DVUA0065 0.84 +0.6 84,599 + DVUA0065 0.84 -1.4 84,623 + DVUA0065 0.85 -2.2 84,668 + DVUA0065 0.88 -1.6 84,685 + DVUA0065 0.89 -0.2 84,712 + DVUA0065 0.90 -1.1 84,712 + DVUA0065 0.90 -0.9 84,713 - DVUA0065 0.90 +0.0 84,762 + +0.3 84,762 + -1.2 84,762 + -0.1 84,762 + +0.2 84,770 - -1.4 85,024 - -0.1 85,182 + -0.0 85,198 - +0.9 85,248 + -0.1 85,355 - +0.7 85,355 - -0.7 85,424 - -0.2 85,649 - DVUA0066 0.20 -1.3 85,755 + DVUA0066 0.27 -0.1 85,807 + DVUA0066 0.31 +0.1 85,807 - DVUA0066 0.31 -1.4 85,809 + DVUA0066 0.31 -0.0 85,817 - DVUA0066 0.31 -0.7 85,886 - DVUA0066 0.36 +0.4
Or see this region's nucleotide sequence