Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2372

Experiment: 9:9 LD Cycle Bioreactor

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	9:9 LD Cycle Bioreactor
2,438,316	+		Synpcc7942_2370	0.40	+0.2
2,438,322	+		Synpcc7942_2370	0.43	-0.5
2,438,348	+		Synpcc7942_2370	0.55	+1.2
2,438,364	+		Synpcc7942_2370	0.63	-1.4
2,438,377	-		Synpcc7942_2370	0.69	+0.6
2,438,377	-		Synpcc7942_2370	0.69	-1.1
2,438,381	+		Synpcc7942_2370	0.71	-0.2
2,438,399	-		Synpcc7942_2370	0.80	+0.2
2,438,400	-		Synpcc7942_2370	0.80	-0.9
2,438,424	+				+1.0
2,438,449	+				-0.6
2,438,515	+				-0.3
2,438,627	-	lpxA	Synpcc7942_2371	0.22	-1.9
2,438,696	+	lpxA	Synpcc7942_2371	0.31	-0.1
2,439,055	+	lpxA	Synpcc7942_2371	0.76	+1.5
2,439,160	+	lpxA	Synpcc7942_2371	0.89	+0.5
2,439,253	+				+0.3
2,439,283	-				+0.2
2,439,283	-				+0.1
2,439,284	+				+2.5
2,439,285	+				-0.6
2,439,293	-				-0.1
2,439,293	-				-0.4
2,439,293	-				+1.5
2,439,293	-				+0.7
2,439,293	-				-0.3
2,439,293	-				+0.5
2,439,307	+				-0.4
2,439,309	-				-1.9
2,439,346	+				+0.5
2,439,351	+				-0.6
2,439,354	-				-1.1
2,439,354	-				-1.5
2,439,354	-				+0.7
2,439,354	-				-0.3
2,439,354	-				+0.1
2,439,354	-				-1.9
2,439,359	-				+0.8
2,439,359	-				-1.3
2,439,382	+				+0.9
2,439,408	+		Synpcc7942_2372	0.12	-0.7
2,439,408	+		Synpcc7942_2372	0.12	-0.8
2,439,416	-		Synpcc7942_2372	0.12	+1.5
2,439,439	+		Synpcc7942_2372	0.14	-0.0
2,439,444	+		Synpcc7942_2372	0.15	-1.0
2,439,447	-		Synpcc7942_2372	0.15	+1.5
2,439,452	-		Synpcc7942_2372	0.16	-1.6
2,439,463	+		Synpcc7942_2372	0.17	-1.2
2,439,463	-		Synpcc7942_2372	0.17	-0.1
2,439,494	-		Synpcc7942_2372	0.20	+0.4
2,439,499	-		Synpcc7942_2372	0.20	-0.2
2,439,577	+		Synpcc7942_2372	0.28	-0.5
2,439,599	+		Synpcc7942_2372	0.30	-0.6
2,439,605	+		Synpcc7942_2372	0.30	-0.1
2,439,632	+		Synpcc7942_2372	0.33	-1.5
2,439,649	-		Synpcc7942_2372	0.34	+0.0
2,439,659	-		Synpcc7942_2372	0.35	+0.5
2,439,683	+		Synpcc7942_2372	0.38	-0.1
2,439,691	-		Synpcc7942_2372	0.38	-1.8
2,439,691	-		Synpcc7942_2372	0.38	+0.5
2,439,691	-		Synpcc7942_2372	0.38	-0.8
2,439,695	+		Synpcc7942_2372	0.39	+1.5
2,439,766	-				+0.3
2,439,770	+		Synpcc7942_2372	0.46	+1.5
2,439,840	+		Synpcc7942_2372	0.53	-1.0
2,439,848	-		Synpcc7942_2372	0.53	-0.6
2,439,857	+		Synpcc7942_2372	0.54	-1.1
2,439,857	+		Synpcc7942_2372	0.54	-0.9
2,439,857	+		Synpcc7942_2372	0.54	-0.1
2,439,865	-		Synpcc7942_2372	0.55	-0.5
2,439,918	+		Synpcc7942_2372	0.60	+0.5
2,439,928	+		Synpcc7942_2372	0.61	-1.3
2,439,940	-		Synpcc7942_2372	0.62	-1.0
2,439,959	-		Synpcc7942_2372	0.64	-1.8
2,439,971	+		Synpcc7942_2372	0.65	-0.8
2,439,997	+		Synpcc7942_2372	0.68	-1.6
2,439,997	+		Synpcc7942_2372	0.68	-0.5
2,440,005	-		Synpcc7942_2372	0.68	-1.3
2,440,034	+		Synpcc7942_2372	0.71	+1.5
2,440,034	+		Synpcc7942_2372	0.71	-3.1
2,440,034	+		Synpcc7942_2372	0.71	-1.2
2,440,042	-		Synpcc7942_2372	0.72	-0.7
2,440,068	+		Synpcc7942_2372	0.74	-0.3
2,440,070	-		Synpcc7942_2372	0.75	+0.7
2,440,070	-		Synpcc7942_2372	0.75	-0.1
2,440,088	+		Synpcc7942_2372	0.76	-2.1
2,440,101	-		Synpcc7942_2372	0.78	-0.6
2,440,139	-		Synpcc7942_2372	0.81	-0.1
2,440,139	-		Synpcc7942_2372	0.81	-0.1
2,440,181	+		Synpcc7942_2372	0.85	-0.3
2,440,261	-				-0.1
2,440,269	+				+1.5
2,440,288	-				+0.0
2,440,294	+				-0.9
2,440,317	-				-0.9
2,440,317	-				-1.2
2,440,317	-				+0.3
2,440,317	-				+0.2
2,440,336	+				+1.3
2,440,341	-				-0.2
2,440,357	+				-0.5
2,440,357	+				+0.3
2,440,380	+				-1.1
2,440,380	+				+1.5
2,440,388	-				+0.9
2,440,409	+				-0.8
2,440,419	+				-0.1
2,440,430	+				+0.3
2,440,441	+				-0.8
2,440,450	-		Synpcc7942_2373	0.11	+2.5
2,440,492	+		Synpcc7942_2373	0.15	-1.9
2,440,498	-		Synpcc7942_2373	0.15	-0.6
2,440,527	-		Synpcc7942_2373	0.18	+0.4
2,440,544	-		Synpcc7942_2373	0.20	+1.5
2,440,545	+		Synpcc7942_2373	0.20	+0.5
2,440,551	+		Synpcc7942_2373	0.20	+0.5
2,440,553	+		Synpcc7942_2373	0.21	-0.7
2,440,553	+		Synpcc7942_2373	0.21	+0.5
2,440,574	+		Synpcc7942_2373	0.23	-0.1
2,440,609	+		Synpcc7942_2373	0.26	-0.8
2,440,641	+		Synpcc7942_2373	0.29	-0.8
2,440,642	+		Synpcc7942_2373	0.29	+0.5
2,440,642	+		Synpcc7942_2373	0.29	-1.0
2,440,650	-		Synpcc7942_2373	0.30	-1.5
2,440,653	+		Synpcc7942_2373	0.30	+0.4
2,440,675	+		Synpcc7942_2373	0.32	+0.6
2,440,691	-		Synpcc7942_2373	0.34	-0.5
2,440,691	-		Synpcc7942_2373	0.34	-0.5
2,440,691	-		Synpcc7942_2373	0.34	+0.9
2,440,721	-		Synpcc7942_2373	0.37	+0.0
2,440,756	+		Synpcc7942_2373	0.40	+0.3
2,440,769	-		Synpcc7942_2373	0.42	+0.3
2,440,864	-		Synpcc7942_2373	0.51	+2.5
2,440,895	-		Synpcc7942_2373	0.54	-0.3
2,440,902	+		Synpcc7942_2373	0.54	+0.9
2,440,902	+		Synpcc7942_2373	0.54	+2.1
2,440,907	+		Synpcc7942_2373	0.55	-0.1
2,440,907	+		Synpcc7942_2373	0.55	-0.5
2,440,907	+		Synpcc7942_2373	0.55	+2.5
2,440,915	-		Synpcc7942_2373	0.56	+1.1
2,440,920	-		Synpcc7942_2373	0.56	+0.2
2,440,922	+		Synpcc7942_2373	0.56	-0.0
2,440,922	+		Synpcc7942_2373	0.56	-0.7
2,440,925	-		Synpcc7942_2373	0.57	+0.4
2,440,951	-		Synpcc7942_2373	0.59	-0.1
2,440,954	+		Synpcc7942_2373	0.59	+1.5
2,440,962	-		Synpcc7942_2373	0.60	+0.1
2,440,962	-		Synpcc7942_2373	0.60	+0.7
2,440,973	+		Synpcc7942_2373	0.61	+1.5
2,440,982	-		Synpcc7942_2373	0.62	-0.4
2,441,021	+		Synpcc7942_2373	0.66	+1.5
2,441,040	-		Synpcc7942_2373	0.68	-0.4
2,441,055	-		Synpcc7942_2373	0.69	-1.5
2,441,091	-		Synpcc7942_2373	0.73	-0.2
2,441,110	-		Synpcc7942_2373	0.74	-0.7
2,441,119	+		Synpcc7942_2373	0.75	-0.3
2,441,164	-		Synpcc7942_2373	0.80	+2.5
2,441,169	-		Synpcc7942_2373	0.80	-0.4
2,441,177	+		Synpcc7942_2373	0.81	-0.1
2,441,185	-		Synpcc7942_2373	0.82	-0.9
2,441,187	+		Synpcc7942_2373	0.82	-1.3
2,441,187	+		Synpcc7942_2373	0.82	-0.3
2,441,192	+		Synpcc7942_2373	0.82	-0.4
2,441,192	+		Synpcc7942_2373	0.82	-0.2
2,441,192	+		Synpcc7942_2373	0.82	-0.8
2,441,195	-		Synpcc7942_2373	0.83	-0.6
2,441,195	-		Synpcc7942_2373	0.83	-0.8
2,441,195	-		Synpcc7942_2373	0.83	-0.1
2,441,195	-		Synpcc7942_2373	0.83	-0.0
2,441,197	-		Synpcc7942_2373	0.83	+0.5
2,441,200	-		Synpcc7942_2373	0.83	-0.0
2,441,210	+		Synpcc7942_2373	0.84	-0.5
2,441,210	+		Synpcc7942_2373	0.84	-0.3
2,441,228	+		Synpcc7942_2373	0.86	+0.0
2,441,228	+		Synpcc7942_2373	0.86	+0.7
2,441,228	+		Synpcc7942_2373	0.86	-0.1
2,441,231	-		Synpcc7942_2373	0.86	+0.4
2,441,256	-		Synpcc7942_2373	0.89	-0.3
2,441,271	+				-0.8
2,441,274	-				+0.0
2,441,283	+				-0.2
2,441,311	+				-0.8