Experiment: 9:9 LD Cycle Bioreactor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dfa1 and dfa3 are separated by 215 nucleotides dfa3 and Synpcc7942_1811 are separated by 270 nucleotides
Synpcc7942_1809: dfa1 - flavoprotein, at 1,877,025 to 1,878,740
dfa1
Synpcc7942_1810: dfa3 - flavoprotein, at 1,878,956 to 1,880,710
dfa3
Synpcc7942_1811: Synpcc7942_1811 - diguanylate cyclase (GGDEF domain) with PAS/PAC sensor, at 1,880,981 to 1,884,094
_1811
Position (kb) 1878
1879
1880
1881 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1877.956 kb on + strand, within dfa1 at 1877.956 kb on - strand, within dfa1 at 1877.958 kb on + strand, within dfa1 at 1877.970 kb on + strand, within dfa1 at 1877.970 kb on + strand, within dfa1 at 1877.978 kb on - strand, within dfa1 at 1877.978 kb on - strand, within dfa1 at 1878.052 kb on - strand, within dfa1 at 1878.085 kb on + strand, within dfa1 at 1878.142 kb on - strand, within dfa1 at 1878.142 kb on - strand, within dfa1 at 1878.142 kb on - strand, within dfa1 at 1878.186 kb on + strand, within dfa1 at 1878.192 kb on - strand, within dfa1 at 1878.209 kb on - strand, within dfa1 at 1878.211 kb on - strand, within dfa1 at 1878.213 kb on + strand, within dfa1 at 1878.213 kb on + strand, within dfa1 at 1878.213 kb on + strand, within dfa1 at 1878.215 kb on - strand, within dfa1 at 1878.222 kb on - strand, within dfa1 at 1878.244 kb on - strand, within dfa1 at 1878.261 kb on - strand, within dfa1 at 1878.286 kb on - strand at 1878.296 kb on + strand, within dfa1 at 1878.296 kb on + strand, within dfa1 at 1878.296 kb on + strand, within dfa1 at 1878.301 kb on + strand, within dfa1 at 1878.301 kb on + strand, within dfa1 at 1878.304 kb on - strand, within dfa1 at 1878.324 kb on - strand, within dfa1 at 1878.346 kb on + strand, within dfa1 at 1878.359 kb on + strand, within dfa1 at 1878.369 kb on + strand, within dfa1 at 1878.377 kb on - strand, within dfa1 at 1878.379 kb on + strand, within dfa1 at 1878.387 kb on - strand, within dfa1 at 1878.392 kb on + strand at 1878.416 kb on + strand, within dfa1 at 1878.482 kb on - strand, within dfa1 at 1878.484 kb on + strand, within dfa1 at 1878.490 kb on - strand, within dfa1 at 1878.524 kb on + strand, within dfa1 at 1878.524 kb on + strand, within dfa1 at 1878.526 kb on - strand, within dfa1 at 1878.532 kb on - strand, within dfa1 at 1878.594 kb on + strand at 1878.602 kb on - strand at 1878.611 kb on - strand at 1878.657 kb on - strand at 1878.669 kb on + strand at 1878.669 kb on + strand at 1878.677 kb on - strand at 1878.735 kb on - strand at 1878.742 kb on - strand at 1878.770 kb on + strand at 1878.775 kb on + strand at 1878.783 kb on - strand at 1878.840 kb on - strand at 1878.868 kb on + strand at 1878.884 kb on + strand at 1878.892 kb on + strand at 1878.899 kb on + strand at 1878.900 kb on - strand at 1878.900 kb on - strand at 1878.907 kb on - strand at 1878.914 kb on - strand at 1878.914 kb on - strand at 1878.948 kb on + strand at 1878.948 kb on + strand at 1878.980 kb on + strand at 1878.988 kb on - strand at 1878.999 kb on + strand at 1879.007 kb on - strand at 1879.030 kb on - strand at 1879.045 kb on - strand at 1879.056 kb on + strand at 1879.063 kb on - strand at 1879.070 kb on - strand at 1879.070 kb on - strand at 1879.070 kb on - strand at 1879.087 kb on + strand at 1879.087 kb on + strand at 1879.115 kb on + strand at 1879.123 kb on - strand at 1879.207 kb on + strand, within dfa3 at 1879.210 kb on + strand, within dfa3 at 1879.216 kb on + strand, within dfa3 at 1879.216 kb on + strand, within dfa3 at 1879.224 kb on - strand, within dfa3 at 1879.224 kb on - strand, within dfa3 at 1879.239 kb on + strand, within dfa3 at 1879.247 kb on - strand, within dfa3 at 1879.247 kb on - strand, within dfa3 at 1879.258 kb on + strand, within dfa3 at 1879.266 kb on - strand, within dfa3 at 1879.298 kb on + strand, within dfa3 at 1879.298 kb on + strand, within dfa3 at 1879.346 kb on + strand, within dfa3 at 1879.402 kb on + strand, within dfa3 at 1879.402 kb on + strand, within dfa3 at 1879.402 kb on + strand at 1879.410 kb on - strand, within dfa3 at 1879.432 kb on + strand, within dfa3 at 1879.443 kb on + strand, within dfa3 at 1879.511 kb on + strand, within dfa3 at 1879.513 kb on + strand, within dfa3 at 1879.548 kb on - strand, within dfa3 at 1879.548 kb on - strand, within dfa3 at 1879.562 kb on + strand, within dfa3 at 1879.567 kb on + strand, within dfa3 at 1879.570 kb on - strand, within dfa3 at 1879.573 kb on + strand, within dfa3 at 1879.576 kb on - strand, within dfa3 at 1879.653 kb on + strand, within dfa3 at 1879.667 kb on - strand, within dfa3 at 1879.698 kb on + strand, within dfa3 at 1879.709 kb on + strand, within dfa3 at 1879.719 kb on + strand, within dfa3 at 1879.758 kb on - strand, within dfa3 at 1879.762 kb on + strand, within dfa3 at 1879.765 kb on - strand, within dfa3 at 1879.770 kb on - strand, within dfa3 at 1879.770 kb on - strand, within dfa3 at 1879.804 kb on + strand, within dfa3 at 1879.890 kb on - strand, within dfa3 at 1879.938 kb on + strand, within dfa3 at 1879.938 kb on + strand, within dfa3 at 1879.946 kb on - strand, within dfa3 at 1880.004 kb on - strand, within dfa3 at 1880.099 kb on - strand, within dfa3 at 1880.212 kb on - strand, within dfa3 at 1880.269 kb on - strand, within dfa3 at 1880.283 kb on + strand, within dfa3 at 1880.494 kb on - strand, within dfa3 at 1880.502 kb on - strand, within dfa3 at 1880.508 kb on + strand, within dfa3 at 1880.516 kb on - strand, within dfa3 at 1880.517 kb on - strand, within dfa3 at 1880.524 kb on + strand, within dfa3 at 1880.545 kb on - strand at 1880.623 kb on + strand at 1880.764 kb on + strand at 1880.912 kb on + strand at 1880.961 kb on - strand at 1881.039 kb on + strand at 1881.053 kb on + strand at 1881.068 kb on + strand at 1881.073 kb on - strand at 1881.114 kb on + strand at 1881.122 kb on - strand at 1881.134 kb on - strand at 1881.159 kb on - strand at 1881.161 kb on - strand at 1881.185 kb on + strand at 1881.198 kb on + strand at 1881.206 kb on - strand at 1881.216 kb on - strand at 1881.249 kb on - strand at 1881.328 kb on - strand, within Synpcc7942_1811 at 1881.366 kb on + strand, within Synpcc7942_1811 at 1881.646 kb on + strand, within Synpcc7942_1811
Per-strain Table
Position Strand Gene LocusTag Fraction 9:9 LD Cycle Bioreactor remove 1,877,956 + dfa1 Synpcc7942_1809 0.54 -3.1 1,877,956 - dfa1 Synpcc7942_1809 0.54 -0.7 1,877,958 + dfa1 Synpcc7942_1809 0.54 -4.0 1,877,970 + dfa1 Synpcc7942_1809 0.55 -1.0 1,877,970 + dfa1 Synpcc7942_1809 0.55 -3.3 1,877,978 - dfa1 Synpcc7942_1809 0.56 -1.9 1,877,978 - dfa1 Synpcc7942_1809 0.56 -0.0 1,878,052 - dfa1 Synpcc7942_1809 0.60 +1.6 1,878,085 + dfa1 Synpcc7942_1809 0.62 -2.3 1,878,142 - dfa1 Synpcc7942_1809 0.65 -2.2 1,878,142 - dfa1 Synpcc7942_1809 0.65 -2.5 1,878,142 - dfa1 Synpcc7942_1809 0.65 -0.0 1,878,186 + dfa1 Synpcc7942_1809 0.68 -0.0 1,878,192 - dfa1 Synpcc7942_1809 0.68 -2.3 1,878,209 - dfa1 Synpcc7942_1809 0.69 -0.0 1,878,211 - dfa1 Synpcc7942_1809 0.69 +0.6 1,878,213 + dfa1 Synpcc7942_1809 0.69 -2.8 1,878,213 + dfa1 Synpcc7942_1809 0.69 -0.6 1,878,213 + dfa1 Synpcc7942_1809 0.69 -2.3 1,878,215 - dfa1 Synpcc7942_1809 0.69 -1.4 1,878,222 - dfa1 Synpcc7942_1809 0.70 -1.6 1,878,244 - dfa1 Synpcc7942_1809 0.71 -1.3 1,878,261 - dfa1 Synpcc7942_1809 0.72 -0.2 1,878,286 - -1.1 1,878,296 + dfa1 Synpcc7942_1809 0.74 -0.2 1,878,296 + dfa1 Synpcc7942_1809 0.74 +2.6 1,878,296 + dfa1 Synpcc7942_1809 0.74 -1.6 1,878,301 + dfa1 Synpcc7942_1809 0.74 -1.1 1,878,301 + dfa1 Synpcc7942_1809 0.74 -2.0 1,878,304 - dfa1 Synpcc7942_1809 0.75 +1.6 1,878,324 - dfa1 Synpcc7942_1809 0.76 -0.7 1,878,346 + dfa1 Synpcc7942_1809 0.77 -2.7 1,878,359 + dfa1 Synpcc7942_1809 0.78 -0.0 1,878,369 + dfa1 Synpcc7942_1809 0.78 -2.3 1,878,377 - dfa1 Synpcc7942_1809 0.79 -0.4 1,878,379 + dfa1 Synpcc7942_1809 0.79 -1.2 1,878,387 - dfa1 Synpcc7942_1809 0.79 -0.7 1,878,392 + -1.0 1,878,416 + dfa1 Synpcc7942_1809 0.81 -0.7 1,878,482 - dfa1 Synpcc7942_1809 0.85 -0.4 1,878,484 + dfa1 Synpcc7942_1809 0.85 -0.7 1,878,490 - dfa1 Synpcc7942_1809 0.85 -2.4 1,878,524 + dfa1 Synpcc7942_1809 0.87 -0.6 1,878,524 + dfa1 Synpcc7942_1809 0.87 -3.2 1,878,526 - dfa1 Synpcc7942_1809 0.87 -2.0 1,878,532 - dfa1 Synpcc7942_1809 0.88 -0.9 1,878,594 + -2.2 1,878,602 - -2.6 1,878,611 - -2.8 1,878,657 - -1.7 1,878,669 + -1.8 1,878,669 + -1.6 1,878,677 - +0.6 1,878,735 - -0.4 1,878,742 - -0.5 1,878,770 + -0.4 1,878,775 + -0.3 1,878,783 - -0.9 1,878,840 - -0.2 1,878,868 + +2.0 1,878,884 + +0.1 1,878,892 + +1.2 1,878,899 + -1.0 1,878,900 - +0.5 1,878,900 - -1.4 1,878,907 - +1.6 1,878,914 - +0.1 1,878,914 - +0.0 1,878,948 + -0.4 1,878,948 + -1.3 1,878,980 + -1.0 1,878,988 - +0.6 1,878,999 + -2.2 1,879,007 - -3.6 1,879,030 - -1.3 1,879,045 - -3.3 1,879,056 + -0.4 1,879,063 - -3.4 1,879,070 - -2.2 1,879,070 - -2.3 1,879,070 - -0.4 1,879,087 + -1.5 1,879,087 + -1.7 1,879,115 + -3.0 1,879,123 - -1.9 1,879,207 + dfa3 Synpcc7942_1810 0.14 -2.9 1,879,210 + dfa3 Synpcc7942_1810 0.14 -0.2 1,879,216 + dfa3 Synpcc7942_1810 0.15 -1.5 1,879,216 + dfa3 Synpcc7942_1810 0.15 -2.3 1,879,224 - dfa3 Synpcc7942_1810 0.15 -1.9 1,879,224 - dfa3 Synpcc7942_1810 0.15 -1.7 1,879,239 + dfa3 Synpcc7942_1810 0.16 +0.7 1,879,247 - dfa3 Synpcc7942_1810 0.17 -1.9 1,879,247 - dfa3 Synpcc7942_1810 0.17 -1.7 1,879,258 + dfa3 Synpcc7942_1810 0.17 -1.6 1,879,266 - dfa3 Synpcc7942_1810 0.18 -0.0 1,879,298 + dfa3 Synpcc7942_1810 0.19 -1.2 1,879,298 + dfa3 Synpcc7942_1810 0.19 +0.6 1,879,346 + dfa3 Synpcc7942_1810 0.22 -0.4 1,879,402 + dfa3 Synpcc7942_1810 0.25 -2.2 1,879,402 + dfa3 Synpcc7942_1810 0.25 -0.4 1,879,402 + +0.6 1,879,410 - dfa3 Synpcc7942_1810 0.26 -0.7 1,879,432 + dfa3 Synpcc7942_1810 0.27 -0.4 1,879,443 + dfa3 Synpcc7942_1810 0.28 +0.6 1,879,511 + dfa3 Synpcc7942_1810 0.32 -2.7 1,879,513 + dfa3 Synpcc7942_1810 0.32 +1.6 1,879,548 - dfa3 Synpcc7942_1810 0.34 -2.7 1,879,548 - dfa3 Synpcc7942_1810 0.34 -2.1 1,879,562 + dfa3 Synpcc7942_1810 0.35 -1.7 1,879,567 + dfa3 Synpcc7942_1810 0.35 +2.6 1,879,570 - dfa3 Synpcc7942_1810 0.35 -0.8 1,879,573 + dfa3 Synpcc7942_1810 0.35 -3.6 1,879,576 - dfa3 Synpcc7942_1810 0.35 -2.5 1,879,653 + dfa3 Synpcc7942_1810 0.40 -0.4 1,879,667 - dfa3 Synpcc7942_1810 0.41 -1.3 1,879,698 + dfa3 Synpcc7942_1810 0.42 -2.6 1,879,709 + dfa3 Synpcc7942_1810 0.43 -3.7 1,879,719 + dfa3 Synpcc7942_1810 0.43 -0.6 1,879,758 - dfa3 Synpcc7942_1810 0.46 -1.5 1,879,762 + dfa3 Synpcc7942_1810 0.46 -0.7 1,879,765 - dfa3 Synpcc7942_1810 0.46 -1.2 1,879,770 - dfa3 Synpcc7942_1810 0.46 -3.0 1,879,770 - dfa3 Synpcc7942_1810 0.46 -2.2 1,879,804 + dfa3 Synpcc7942_1810 0.48 -0.9 1,879,890 - dfa3 Synpcc7942_1810 0.53 -0.4 1,879,938 + dfa3 Synpcc7942_1810 0.56 -3.1 1,879,938 + dfa3 Synpcc7942_1810 0.56 -0.9 1,879,946 - dfa3 Synpcc7942_1810 0.56 +0.6 1,880,004 - dfa3 Synpcc7942_1810 0.60 -0.7 1,880,099 - dfa3 Synpcc7942_1810 0.65 -1.6 1,880,212 - dfa3 Synpcc7942_1810 0.72 -1.9 1,880,269 - dfa3 Synpcc7942_1810 0.75 -2.9 1,880,283 + dfa3 Synpcc7942_1810 0.76 -1.7 1,880,494 - dfa3 Synpcc7942_1810 0.88 -1.7 1,880,502 - dfa3 Synpcc7942_1810 0.88 -1.5 1,880,508 + dfa3 Synpcc7942_1810 0.88 -1.8 1,880,516 - dfa3 Synpcc7942_1810 0.89 -2.7 1,880,517 - dfa3 Synpcc7942_1810 0.89 -0.4 1,880,524 + dfa3 Synpcc7942_1810 0.89 -2.4 1,880,545 - -2.6 1,880,623 + -1.7 1,880,764 + +1.0 1,880,912 + -1.2 1,880,961 - +0.6 1,881,039 + -0.4 1,881,053 + +0.6 1,881,068 + -0.3 1,881,073 - -0.3 1,881,114 + -0.0 1,881,122 - -0.2 1,881,134 - -0.4 1,881,159 - -1.0 1,881,161 - -0.0 1,881,185 + -0.5 1,881,198 + -0.5 1,881,206 - +0.1 1,881,216 - -0.3 1,881,249 - -0.3 1,881,328 - Synpcc7942_1811 0.11 -0.1 1,881,366 + Synpcc7942_1811 0.12 -0.2 1,881,646 + Synpcc7942_1811 0.21 -0.3
Or see this region's nucleotide sequence