Experiment: 9:9 LD Cycle Bioreactor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0705 and cobL are separated by 6 nucleotides cobL and cad overlap by 20 nucleotides cad and Synpcc7942_0708 are separated by 66 nucleotides
Synpcc7942_0705: Synpcc7942_0705 - hypothetical protein, at 695,935 to 696,570
_0705
Synpcc7942_0706: cobL - precorrin-6B methylase, at 696,577 to 697,191
cobL
Synpcc7942_0707: cad - arginine decarboxylase, at 697,172 to 698,641
cad
Synpcc7942_0708: Synpcc7942_0708 - hypothetical protein, at 698,708 to 700,459
_0708
Position (kb) 697
698
699 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 696.209 kb on - strand, within Synpcc7942_0705 at 696.213 kb on + strand, within Synpcc7942_0705 at 696.301 kb on - strand, within Synpcc7942_0705 at 696.371 kb on - strand, within Synpcc7942_0705 at 696.387 kb on + strand, within Synpcc7942_0705 at 696.397 kb on + strand, within Synpcc7942_0705 at 696.397 kb on + strand, within Synpcc7942_0705 at 696.403 kb on - strand, within Synpcc7942_0705 at 696.464 kb on + strand, within Synpcc7942_0705 at 696.464 kb on - strand, within Synpcc7942_0705 at 696.466 kb on + strand, within Synpcc7942_0705 at 696.474 kb on - strand, within Synpcc7942_0705 at 696.474 kb on - strand at 696.474 kb on - strand, within Synpcc7942_0705 at 696.719 kb on + strand, within cobL at 696.722 kb on + strand, within cobL at 696.722 kb on + strand, within cobL at 696.724 kb on + strand, within cobL at 696.748 kb on + strand, within cobL at 696.756 kb on - strand, within cobL at 696.756 kb on - strand, within cobL at 696.770 kb on + strand, within cobL at 696.799 kb on - strand, within cobL at 696.799 kb on - strand, within cobL at 696.837 kb on + strand, within cobL at 696.845 kb on - strand, within cobL at 696.866 kb on - strand, within cobL at 696.888 kb on - strand, within cobL at 696.896 kb on + strand, within cobL at 696.923 kb on - strand, within cobL at 696.926 kb on + strand, within cobL at 696.930 kb on + strand, within cobL at 696.955 kb on - strand, within cobL at 696.983 kb on + strand, within cobL at 696.983 kb on + strand, within cobL at 697.040 kb on + strand, within cobL at 697.040 kb on - strand, within cobL at 697.055 kb on - strand, within cobL at 697.135 kb on - strand at 697.144 kb on + strand at 697.154 kb on + strand at 697.159 kb on + strand at 697.162 kb on - strand at 697.162 kb on - strand at 697.178 kb on - strand at 697.180 kb on + strand at 697.180 kb on + strand at 697.183 kb on - strand at 697.187 kb on + strand at 697.188 kb on - strand at 697.198 kb on + strand at 697.205 kb on + strand at 697.205 kb on + strand at 697.213 kb on - strand at 697.226 kb on + strand at 697.349 kb on + strand at 697.395 kb on - strand, within cad at 697.432 kb on + strand, within cad at 697.500 kb on - strand, within cad at 697.502 kb on - strand, within cad at 697.517 kb on + strand, within cad at 697.519 kb on - strand, within cad at 697.529 kb on - strand, within cad at 697.583 kb on - strand, within cad at 697.678 kb on + strand, within cad at 697.720 kb on + strand, within cad at 697.744 kb on - strand, within cad at 697.828 kb on + strand, within cad at 697.878 kb on - strand, within cad at 697.909 kb on + strand, within cad at 697.914 kb on + strand, within cad at 697.922 kb on - strand, within cad at 697.945 kb on - strand, within cad at 698.042 kb on + strand, within cad at 698.124 kb on + strand, within cad at 698.251 kb on - strand, within cad at 698.412 kb on + strand, within cad at 698.438 kb on - strand, within cad at 698.442 kb on + strand, within cad at 698.530 kb on - strand at 698.531 kb on - strand at 698.599 kb on + strand at 698.645 kb on + strand at 698.645 kb on + strand at 698.715 kb on + strand at 698.722 kb on + strand at 698.762 kb on + strand at 698.762 kb on + strand at 698.786 kb on - strand at 698.838 kb on + strand at 698.876 kb on + strand at 698.878 kb on + strand at 698.878 kb on + strand at 698.878 kb on + strand at 698.878 kb on + strand at 698.878 kb on + strand at 698.878 kb on + strand at 698.886 kb on - strand, within Synpcc7942_0708 at 698.886 kb on - strand at 698.886 kb on - strand, within Synpcc7942_0708 at 698.886 kb on - strand, within Synpcc7942_0708 at 698.889 kb on + strand, within Synpcc7942_0708 at 698.911 kb on - strand, within Synpcc7942_0708 at 698.919 kb on - strand, within Synpcc7942_0708 at 698.920 kb on + strand, within Synpcc7942_0708 at 698.925 kb on + strand, within Synpcc7942_0708 at 698.955 kb on + strand, within Synpcc7942_0708 at 698.956 kb on + strand, within Synpcc7942_0708 at 698.969 kb on - strand, within Synpcc7942_0708 at 698.989 kb on - strand, within Synpcc7942_0708 at 699.008 kb on - strand, within Synpcc7942_0708 at 699.127 kb on - strand, within Synpcc7942_0708 at 699.149 kb on - strand, within Synpcc7942_0708 at 699.172 kb on - strand, within Synpcc7942_0708 at 699.183 kb on - strand, within Synpcc7942_0708 at 699.229 kb on - strand, within Synpcc7942_0708 at 699.236 kb on - strand, within Synpcc7942_0708 at 699.514 kb on - strand, within Synpcc7942_0708 at 699.635 kb on + strand, within Synpcc7942_0708
Per-strain Table
Position Strand Gene LocusTag Fraction 9:9 LD Cycle Bioreactor remove 696,209 - Synpcc7942_0705 0.43 -1.5 696,213 + Synpcc7942_0705 0.44 -1.4 696,301 - Synpcc7942_0705 0.58 -0.8 696,371 - Synpcc7942_0705 0.69 -0.1 696,387 + Synpcc7942_0705 0.71 -0.2 696,397 + Synpcc7942_0705 0.73 -0.6 696,397 + Synpcc7942_0705 0.73 +0.1 696,403 - Synpcc7942_0705 0.74 -0.8 696,464 + Synpcc7942_0705 0.83 +0.2 696,464 - Synpcc7942_0705 0.83 -1.5 696,466 + Synpcc7942_0705 0.83 +0.5 696,474 - Synpcc7942_0705 0.85 -0.3 696,474 - -0.5 696,474 - Synpcc7942_0705 0.85 +0.2 696,719 + cobL Synpcc7942_0706 0.23 +0.6 696,722 + cobL Synpcc7942_0706 0.24 -0.4 696,722 + cobL Synpcc7942_0706 0.24 +0.8 696,724 + cobL Synpcc7942_0706 0.24 +1.6 696,748 + cobL Synpcc7942_0706 0.28 -2.2 696,756 - cobL Synpcc7942_0706 0.29 +1.9 696,756 - cobL Synpcc7942_0706 0.29 +2.1 696,770 + cobL Synpcc7942_0706 0.31 +0.5 696,799 - cobL Synpcc7942_0706 0.36 +0.8 696,799 - cobL Synpcc7942_0706 0.36 +0.7 696,837 + cobL Synpcc7942_0706 0.42 +0.8 696,845 - cobL Synpcc7942_0706 0.44 +2.1 696,866 - cobL Synpcc7942_0706 0.47 +0.6 696,888 - cobL Synpcc7942_0706 0.51 -1.4 696,896 + cobL Synpcc7942_0706 0.52 +0.9 696,923 - cobL Synpcc7942_0706 0.56 +0.2 696,926 + cobL Synpcc7942_0706 0.57 +0.2 696,930 + cobL Synpcc7942_0706 0.57 -0.0 696,955 - cobL Synpcc7942_0706 0.61 +0.7 696,983 + cobL Synpcc7942_0706 0.66 -0.0 696,983 + cobL Synpcc7942_0706 0.66 -0.5 697,040 + cobL Synpcc7942_0706 0.75 -1.0 697,040 - cobL Synpcc7942_0706 0.75 +0.8 697,055 - cobL Synpcc7942_0706 0.78 +0.8 697,135 - -0.0 697,144 + +0.6 697,154 + +0.9 697,159 + +1.3 697,162 - +1.6 697,162 - +0.6 697,178 - -0.4 697,180 + -0.6 697,180 + -0.0 697,183 - -0.6 697,187 + -1.3 697,188 - +1.2 697,198 + -1.9 697,205 + +0.1 697,205 + +2.9 697,213 - +1.6 697,226 + +1.6 697,349 + -0.4 697,395 - cad Synpcc7942_0707 0.15 +1.6 697,432 + cad Synpcc7942_0707 0.18 +1.5 697,500 - cad Synpcc7942_0707 0.22 -0.8 697,502 - cad Synpcc7942_0707 0.22 +1.5 697,517 + cad Synpcc7942_0707 0.23 -0.0 697,519 - cad Synpcc7942_0707 0.24 +1.5 697,529 - cad Synpcc7942_0707 0.24 -2.3 697,583 - cad Synpcc7942_0707 0.28 +1.5 697,678 + cad Synpcc7942_0707 0.34 +1.5 697,720 + cad Synpcc7942_0707 0.37 +0.5 697,744 - cad Synpcc7942_0707 0.39 -1.1 697,828 + cad Synpcc7942_0707 0.45 +0.5 697,878 - cad Synpcc7942_0707 0.48 -0.5 697,909 + cad Synpcc7942_0707 0.50 +1.5 697,914 + cad Synpcc7942_0707 0.50 -0.0 697,922 - cad Synpcc7942_0707 0.51 -0.9 697,945 - cad Synpcc7942_0707 0.53 -0.9 698,042 + cad Synpcc7942_0707 0.59 +1.5 698,124 + cad Synpcc7942_0707 0.65 +1.5 698,251 - cad Synpcc7942_0707 0.73 +1.5 698,412 + cad Synpcc7942_0707 0.84 +1.5 698,438 - cad Synpcc7942_0707 0.86 -0.0 698,442 + cad Synpcc7942_0707 0.86 +1.5 698,530 - +1.5 698,531 - +1.5 698,599 + +1.5 698,645 + +1.0 698,645 + +0.5 698,715 + +0.2 698,722 + -2.3 698,762 + -0.5 698,762 + +1.0 698,786 - +0.5 698,838 + +0.5 698,876 + -2.0 698,878 + +2.1 698,878 + +1.5 698,878 + +0.5 698,878 + -1.6 698,878 + -0.0 698,878 + +1.0 698,886 - Synpcc7942_0708 0.10 -0.5 698,886 - +0.5 698,886 - Synpcc7942_0708 0.10 -0.0 698,886 - Synpcc7942_0708 0.10 -0.5 698,889 + Synpcc7942_0708 0.10 +1.5 698,911 - Synpcc7942_0708 0.12 -0.5 698,919 - Synpcc7942_0708 0.12 +1.5 698,920 + Synpcc7942_0708 0.12 -1.9 698,925 + Synpcc7942_0708 0.12 +1.5 698,955 + Synpcc7942_0708 0.14 +1.5 698,956 + Synpcc7942_0708 0.14 -0.3 698,969 - Synpcc7942_0708 0.15 +0.5 698,989 - Synpcc7942_0708 0.16 -0.8 699,008 - Synpcc7942_0708 0.17 -1.3 699,127 - Synpcc7942_0708 0.24 +1.5 699,149 - Synpcc7942_0708 0.25 -0.5 699,172 - Synpcc7942_0708 0.26 -0.1 699,183 - Synpcc7942_0708 0.27 +1.5 699,229 - Synpcc7942_0708 0.30 +1.5 699,236 - Synpcc7942_0708 0.30 -0.5 699,514 - Synpcc7942_0708 0.46 +0.5 699,635 + Synpcc7942_0708 0.53 -0.0
Or see this region's nucleotide sequence