Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0562

Experiment: 9:9 LD Cycle Bioreactor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0561 and Synpcc7942_0562 are separated by 91 nucleotidesSynpcc7942_0562 and uvrB are separated by 57 nucleotides Synpcc7942_0561: Synpcc7942_0561 - hypothetical protein, at 542,054 to 543,049 _0561 Synpcc7942_0562: Synpcc7942_0562 - hypothetical protein, at 543,141 to 543,596 _0562 Synpcc7942_0563: uvrB - excinuclease ABC subunit B, at 543,654 to 545,654 uvrB Position (kb) 543 544Strain fitness (log2 ratio) -2 -1 0 1 2at 542.171 kb on - strand, within Synpcc7942_0561at 542.173 kb on + strand, within Synpcc7942_0561at 542.203 kb on - strand, within Synpcc7942_0561at 542.216 kb on - strand, within Synpcc7942_0561at 542.216 kb on - strand, within Synpcc7942_0561at 542.216 kb on - strand, within Synpcc7942_0561at 542.243 kb on + strand, within Synpcc7942_0561at 542.285 kb on + strand, within Synpcc7942_0561at 542.304 kb on + strand, within Synpcc7942_0561at 542.304 kb on + strand, within Synpcc7942_0561at 542.312 kb on - strand, within Synpcc7942_0561at 542.312 kb on - strand, within Synpcc7942_0561at 542.333 kb on + strand, within Synpcc7942_0561at 542.369 kb on + strand, within Synpcc7942_0561at 542.374 kb on + strand, within Synpcc7942_0561at 542.377 kb on - strand, within Synpcc7942_0561at 542.390 kb on - strand, within Synpcc7942_0561at 542.418 kb on - strand, within Synpcc7942_0561at 542.504 kb on + strand, within Synpcc7942_0561at 542.504 kb on + strand, within Synpcc7942_0561at 542.504 kb on + strand, within Synpcc7942_0561at 542.512 kb on - strand, within Synpcc7942_0561at 542.515 kb on + strand, within Synpcc7942_0561at 542.525 kb on + strand, within Synpcc7942_0561at 542.533 kb on - strand, within Synpcc7942_0561at 542.533 kb on - strand, within Synpcc7942_0561at 542.533 kb on - strand, within Synpcc7942_0561at 542.533 kb on - strand, within Synpcc7942_0561at 542.549 kb on + strand, within Synpcc7942_0561at 542.557 kb on - strand, within Synpcc7942_0561at 542.563 kb on + strand, within Synpcc7942_0561at 542.592 kb on + strand, within Synpcc7942_0561at 542.623 kb on + strand, within Synpcc7942_0561at 542.623 kb on + strand, within Synpcc7942_0561at 542.631 kb on - strand, within Synpcc7942_0561at 542.632 kb on - strand, within Synpcc7942_0561at 542.708 kb on - strand, within Synpcc7942_0561at 542.786 kb on - strand, within Synpcc7942_0561at 542.796 kb on - strand, within Synpcc7942_0561at 542.809 kb on - strand, within Synpcc7942_0561at 542.816 kb on + strand, within Synpcc7942_0561at 542.824 kb on - strand, within Synpcc7942_0561at 542.892 kb on - strand, within Synpcc7942_0561at 543.009 kb on + strandat 543.016 kb on + strandat 543.018 kb on + strandat 543.018 kb on + strandat 543.027 kb on + strandat 543.049 kb on - strandat 543.056 kb on + strandat 543.056 kb on + strandat 543.056 kb on + strandat 543.056 kb on + strandat 543.056 kb on + strandat 543.064 kb on - strandat 543.064 kb on - strandat 543.071 kb on - strandat 543.071 kb on - strandat 543.131 kb on + strandat 543.194 kb on + strand, within Synpcc7942_0562at 543.202 kb on - strand, within Synpcc7942_0562at 543.202 kb on - strand, within Synpcc7942_0562at 543.202 kb on - strand, within Synpcc7942_0562at 543.202 kb on - strand, within Synpcc7942_0562at 543.313 kb on + strand, within Synpcc7942_0562at 543.318 kb on + strand, within Synpcc7942_0562at 543.319 kb on - strand, within Synpcc7942_0562at 543.323 kb on + strand, within Synpcc7942_0562at 543.345 kb on + strand, within Synpcc7942_0562at 543.363 kb on - strand, within Synpcc7942_0562at 543.363 kb on - strand, within Synpcc7942_0562at 543.375 kb on + strand, within Synpcc7942_0562at 543.382 kb on + strand, within Synpcc7942_0562at 543.401 kb on - strand, within Synpcc7942_0562at 543.432 kb on - strand, within Synpcc7942_0562at 543.442 kb on - strand, within Synpcc7942_0562at 543.454 kb on + strand, within Synpcc7942_0562at 543.462 kb on - strand, within Synpcc7942_0562at 543.483 kb on - strand, within Synpcc7942_0562at 543.505 kb on + strand, within Synpcc7942_0562at 543.513 kb on - strand, within Synpcc7942_0562at 543.518 kb on - strand, within Synpcc7942_0562at 543.552 kb on + strandat 543.553 kb on - strandat 543.554 kb on - strandat 543.564 kb on + strandat 543.565 kb on + strandat 543.572 kb on - strandat 543.572 kb on - strandat 543.572 kb on - strandat 543.590 kb on + strandat 543.710 kb on - strandat 543.710 kb on - strandat 543.821 kb on + strandat 543.840 kb on - strandat 543.861 kb on - strand, within uvrBat 544.073 kb on + strand, within uvrBat 544.120 kb on - strand, within uvrBat 544.127 kb on + strand, within uvrBat 544.128 kb on + strand, within uvrBat 544.539 kb on + strand, within uvrBat 544.552 kb on - strand, within uvrB

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Per-strain Table

Position Strand Gene LocusTag Fraction 9:9 LD Cycle Bioreactor
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542,171 - Synpcc7942_0561 0.12 -1.6
542,173 + Synpcc7942_0561 0.12 +1.6
542,203 - Synpcc7942_0561 0.15 +0.6
542,216 - Synpcc7942_0561 0.16 -0.0
542,216 - Synpcc7942_0561 0.16 -0.8
542,216 - Synpcc7942_0561 0.16 +1.0
542,243 + Synpcc7942_0561 0.19 -0.0
542,285 + Synpcc7942_0561 0.23 +0.2
542,304 + Synpcc7942_0561 0.25 -0.4
542,304 + Synpcc7942_0561 0.25 -1.0
542,312 - Synpcc7942_0561 0.26 -0.4
542,312 - Synpcc7942_0561 0.26 -0.4
542,333 + Synpcc7942_0561 0.28 -1.5
542,369 + Synpcc7942_0561 0.32 -0.4
542,374 + Synpcc7942_0561 0.32 -1.0
542,377 - Synpcc7942_0561 0.32 +1.6
542,390 - Synpcc7942_0561 0.34 +1.6
542,418 - Synpcc7942_0561 0.37 -0.0
542,504 + Synpcc7942_0561 0.45 -1.1
542,504 + Synpcc7942_0561 0.45 +0.6
542,504 + Synpcc7942_0561 0.45 +0.6
542,512 - Synpcc7942_0561 0.46 -1.3
542,515 + Synpcc7942_0561 0.46 +0.2
542,525 + Synpcc7942_0561 0.47 -0.8
542,533 - Synpcc7942_0561 0.48 -1.6
542,533 - Synpcc7942_0561 0.48 +1.6
542,533 - Synpcc7942_0561 0.48 -0.4
542,533 - Synpcc7942_0561 0.48 +0.4
542,549 + Synpcc7942_0561 0.50 -0.0
542,557 - Synpcc7942_0561 0.51 -0.0
542,563 + Synpcc7942_0561 0.51 +1.6
542,592 + Synpcc7942_0561 0.54 +0.6
542,623 + Synpcc7942_0561 0.57 +1.6
542,623 + Synpcc7942_0561 0.57 +1.0
542,631 - Synpcc7942_0561 0.58 +1.6
542,632 - Synpcc7942_0561 0.58 +0.8
542,708 - Synpcc7942_0561 0.66 +2.6
542,786 - Synpcc7942_0561 0.73 -0.0
542,796 - Synpcc7942_0561 0.74 +0.8
542,809 - Synpcc7942_0561 0.76 -0.0
542,816 + Synpcc7942_0561 0.77 +1.6
542,824 - Synpcc7942_0561 0.77 +0.6
542,892 - Synpcc7942_0561 0.84 +1.6
543,009 + +0.6
543,016 + +0.2
543,018 + -0.4
543,018 + +1.6
543,027 + -0.8
543,049 - +0.6
543,056 + -0.9
543,056 + +0.3
543,056 + -2.2
543,056 + -0.2
543,056 + +1.2
543,064 - +0.6
543,064 - -2.3
543,071 - -0.0
543,071 - +0.7
543,131 + -0.0
543,194 + Synpcc7942_0562 0.12 +0.6
543,202 - Synpcc7942_0562 0.13 +0.6
543,202 - Synpcc7942_0562 0.13 -0.8
543,202 - Synpcc7942_0562 0.13 +1.6
543,202 - Synpcc7942_0562 0.13 -0.7
543,313 + Synpcc7942_0562 0.38 +0.3
543,318 + Synpcc7942_0562 0.39 -2.4
543,319 - Synpcc7942_0562 0.39 -1.8
543,323 + Synpcc7942_0562 0.40 +0.8
543,345 + Synpcc7942_0562 0.45 +2.6
543,363 - Synpcc7942_0562 0.49 +0.2
543,363 - Synpcc7942_0562 0.49 +1.6
543,375 + Synpcc7942_0562 0.51 -0.8
543,382 + Synpcc7942_0562 0.53 -0.0
543,401 - Synpcc7942_0562 0.57 -0.8
543,432 - Synpcc7942_0562 0.64 -0.6
543,442 - Synpcc7942_0562 0.66 +0.2
543,454 + Synpcc7942_0562 0.69 -0.2
543,462 - Synpcc7942_0562 0.70 -0.0
543,483 - Synpcc7942_0562 0.75 -0.0
543,505 + Synpcc7942_0562 0.80 -0.8
543,513 - Synpcc7942_0562 0.82 -0.9
543,518 - Synpcc7942_0562 0.83 -1.0
543,552 + +0.2
543,553 - -0.2
543,554 - -0.1
543,564 + -1.6
543,565 + +0.9
543,572 - +0.6
543,572 - -1.1
543,572 - -0.0
543,590 + +1.0
543,710 - -1.4
543,710 - +1.0
543,821 + -0.3
543,840 - +0.1
543,861 - uvrB Synpcc7942_0563 0.10 -0.3
544,073 + uvrB Synpcc7942_0563 0.21 +0.2
544,120 - uvrB Synpcc7942_0563 0.23 +0.4
544,127 + uvrB Synpcc7942_0563 0.24 -0.8
544,128 + uvrB Synpcc7942_0563 0.24 -0.8
544,539 + uvrB Synpcc7942_0563 0.44 +1.6
544,552 - uvrB Synpcc7942_0563 0.45 +0.6

Or see this region's nucleotide sequence