Experiment: 9:9 LD Cycle Bioreactor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hslO and Synpcc7942_0560 are separated by 32 nucleotides Synpcc7942_0560 and Synpcc7942_0561 are separated by 74 nucleotides Synpcc7942_0561 and Synpcc7942_0562 are separated by 91 nucleotides Synpcc7942_0562 and uvrB are separated by 57 nucleotides
Synpcc7942_0559: hslO - Hsp33-like chaperonin, at 540,349 to 541,242
hslO
Synpcc7942_0560: Synpcc7942_0560 - ATPase, at 541,275 to 541,979
_0560
Synpcc7942_0561: Synpcc7942_0561 - hypothetical protein, at 542,054 to 543,049
_0561
Synpcc7942_0562: Synpcc7942_0562 - hypothetical protein, at 543,141 to 543,596
_0562
Synpcc7942_0563: uvrB - excinuclease ABC subunit B, at 543,654 to 545,654
uvrB
Position (kb) 542
543
544 Strain fitness (log2 ratio) -2
-1
0
1
2 at 541.084 kb on - strand, within hslO at 541.111 kb on + strand, within hslO at 541.111 kb on + strand, within hslO at 541.111 kb on + strand, within hslO at 541.111 kb on + strand, within hslO at 541.111 kb on + strand, within hslO at 541.119 kb on - strand, within hslO at 541.119 kb on - strand, within hslO at 541.119 kb on - strand, within hslO at 541.119 kb on - strand, within hslO at 541.135 kb on + strand, within hslO at 541.145 kb on + strand, within hslO at 541.153 kb on - strand at 541.153 kb on - strand at 541.171 kb on - strand at 541.207 kb on + strand at 541.225 kb on + strand at 541.228 kb on + strand at 541.233 kb on + strand at 541.234 kb on - strand at 541.238 kb on + strand at 541.238 kb on + strand at 541.258 kb on - strand at 541.290 kb on + strand at 541.295 kb on + strand at 541.324 kb on + strand at 541.332 kb on - strand at 541.341 kb on + strand at 541.948 kb on + strand at 541.948 kb on + strand at 541.948 kb on + strand at 541.994 kb on + strand at 542.002 kb on - strand at 542.002 kb on - strand at 542.015 kb on + strand at 542.099 kb on + strand at 542.107 kb on + strand at 542.110 kb on - strand at 542.115 kb on - strand at 542.171 kb on - strand, within Synpcc7942_0561 at 542.173 kb on + strand, within Synpcc7942_0561 at 542.203 kb on - strand, within Synpcc7942_0561 at 542.216 kb on - strand, within Synpcc7942_0561 at 542.216 kb on - strand, within Synpcc7942_0561 at 542.216 kb on - strand, within Synpcc7942_0561 at 542.243 kb on + strand, within Synpcc7942_0561 at 542.285 kb on + strand, within Synpcc7942_0561 at 542.304 kb on + strand, within Synpcc7942_0561 at 542.304 kb on + strand, within Synpcc7942_0561 at 542.312 kb on - strand, within Synpcc7942_0561 at 542.312 kb on - strand, within Synpcc7942_0561 at 542.333 kb on + strand, within Synpcc7942_0561 at 542.369 kb on + strand, within Synpcc7942_0561 at 542.374 kb on + strand, within Synpcc7942_0561 at 542.377 kb on - strand, within Synpcc7942_0561 at 542.390 kb on - strand, within Synpcc7942_0561 at 542.418 kb on - strand, within Synpcc7942_0561 at 542.504 kb on + strand, within Synpcc7942_0561 at 542.504 kb on + strand, within Synpcc7942_0561 at 542.504 kb on + strand, within Synpcc7942_0561 at 542.512 kb on - strand, within Synpcc7942_0561 at 542.515 kb on + strand, within Synpcc7942_0561 at 542.525 kb on + strand, within Synpcc7942_0561 at 542.533 kb on - strand, within Synpcc7942_0561 at 542.533 kb on - strand, within Synpcc7942_0561 at 542.533 kb on - strand, within Synpcc7942_0561 at 542.533 kb on - strand, within Synpcc7942_0561 at 542.549 kb on + strand, within Synpcc7942_0561 at 542.557 kb on - strand, within Synpcc7942_0561 at 542.563 kb on + strand, within Synpcc7942_0561 at 542.592 kb on + strand, within Synpcc7942_0561 at 542.623 kb on + strand, within Synpcc7942_0561 at 542.623 kb on + strand, within Synpcc7942_0561 at 542.631 kb on - strand, within Synpcc7942_0561 at 542.632 kb on - strand, within Synpcc7942_0561 at 542.708 kb on - strand, within Synpcc7942_0561 at 542.786 kb on - strand, within Synpcc7942_0561 at 542.796 kb on - strand, within Synpcc7942_0561 at 542.809 kb on - strand, within Synpcc7942_0561 at 542.816 kb on + strand, within Synpcc7942_0561 at 542.824 kb on - strand, within Synpcc7942_0561 at 542.892 kb on - strand, within Synpcc7942_0561 at 543.009 kb on + strand at 543.016 kb on + strand at 543.018 kb on + strand at 543.018 kb on + strand at 543.027 kb on + strand at 543.049 kb on - strand at 543.056 kb on + strand at 543.056 kb on + strand at 543.056 kb on + strand at 543.056 kb on + strand at 543.056 kb on + strand at 543.064 kb on - strand at 543.064 kb on - strand at 543.071 kb on - strand at 543.071 kb on - strand at 543.131 kb on + strand at 543.194 kb on + strand, within Synpcc7942_0562 at 543.202 kb on - strand, within Synpcc7942_0562 at 543.202 kb on - strand, within Synpcc7942_0562 at 543.202 kb on - strand, within Synpcc7942_0562 at 543.202 kb on - strand, within Synpcc7942_0562 at 543.313 kb on + strand, within Synpcc7942_0562 at 543.318 kb on + strand, within Synpcc7942_0562 at 543.319 kb on - strand, within Synpcc7942_0562 at 543.323 kb on + strand, within Synpcc7942_0562 at 543.345 kb on + strand, within Synpcc7942_0562 at 543.363 kb on - strand, within Synpcc7942_0562 at 543.363 kb on - strand, within Synpcc7942_0562 at 543.375 kb on + strand, within Synpcc7942_0562 at 543.382 kb on + strand, within Synpcc7942_0562 at 543.401 kb on - strand, within Synpcc7942_0562 at 543.432 kb on - strand, within Synpcc7942_0562 at 543.442 kb on - strand, within Synpcc7942_0562 at 543.454 kb on + strand, within Synpcc7942_0562 at 543.462 kb on - strand, within Synpcc7942_0562 at 543.483 kb on - strand, within Synpcc7942_0562 at 543.505 kb on + strand, within Synpcc7942_0562 at 543.513 kb on - strand, within Synpcc7942_0562 at 543.518 kb on - strand, within Synpcc7942_0562 at 543.552 kb on + strand at 543.553 kb on - strand at 543.554 kb on - strand at 543.564 kb on + strand at 543.565 kb on + strand at 543.572 kb on - strand at 543.572 kb on - strand at 543.572 kb on - strand at 543.590 kb on + strand at 543.710 kb on - strand at 543.710 kb on - strand at 543.821 kb on + strand at 543.840 kb on - strand at 543.861 kb on - strand, within uvrB
Per-strain Table
Position Strand Gene LocusTag Fraction 9:9 LD Cycle Bioreactor remove 541,084 - hslO Synpcc7942_0559 0.82 -1.0 541,111 + hslO Synpcc7942_0559 0.85 -1.2 541,111 + hslO Synpcc7942_0559 0.85 -0.9 541,111 + hslO Synpcc7942_0559 0.85 -0.6 541,111 + hslO Synpcc7942_0559 0.85 +0.6 541,111 + hslO Synpcc7942_0559 0.85 +0.6 541,119 - hslO Synpcc7942_0559 0.86 -0.8 541,119 - hslO Synpcc7942_0559 0.86 -0.0 541,119 - hslO Synpcc7942_0559 0.86 -0.0 541,119 - hslO Synpcc7942_0559 0.86 -0.0 541,135 + hslO Synpcc7942_0559 0.88 +0.4 541,145 + hslO Synpcc7942_0559 0.89 -0.3 541,153 - -0.8 541,153 - +0.4 541,171 - -0.2 541,207 + -0.6 541,225 + -0.4 541,228 + +0.4 541,233 + -1.9 541,234 - -0.8 541,238 + +0.2 541,238 + +0.5 541,258 - +0.2 541,290 + +1.6 541,295 + -0.4 541,324 + -0.2 541,332 - -0.4 541,341 + +1.6 541,948 + -2.6 541,948 + -0.4 541,948 + +0.2 541,994 + +0.4 542,002 - +0.8 542,002 - +0.3 542,015 + +0.6 542,099 + +0.6 542,107 + +1.6 542,110 - +2.1 542,115 - +1.0 542,171 - Synpcc7942_0561 0.12 -1.6 542,173 + Synpcc7942_0561 0.12 +1.6 542,203 - Synpcc7942_0561 0.15 +0.6 542,216 - Synpcc7942_0561 0.16 -0.0 542,216 - Synpcc7942_0561 0.16 -0.8 542,216 - Synpcc7942_0561 0.16 +1.0 542,243 + Synpcc7942_0561 0.19 -0.0 542,285 + Synpcc7942_0561 0.23 +0.2 542,304 + Synpcc7942_0561 0.25 -0.4 542,304 + Synpcc7942_0561 0.25 -1.0 542,312 - Synpcc7942_0561 0.26 -0.4 542,312 - Synpcc7942_0561 0.26 -0.4 542,333 + Synpcc7942_0561 0.28 -1.5 542,369 + Synpcc7942_0561 0.32 -0.4 542,374 + Synpcc7942_0561 0.32 -1.0 542,377 - Synpcc7942_0561 0.32 +1.6 542,390 - Synpcc7942_0561 0.34 +1.6 542,418 - Synpcc7942_0561 0.37 -0.0 542,504 + Synpcc7942_0561 0.45 -1.1 542,504 + Synpcc7942_0561 0.45 +0.6 542,504 + Synpcc7942_0561 0.45 +0.6 542,512 - Synpcc7942_0561 0.46 -1.3 542,515 + Synpcc7942_0561 0.46 +0.2 542,525 + Synpcc7942_0561 0.47 -0.8 542,533 - Synpcc7942_0561 0.48 -1.6 542,533 - Synpcc7942_0561 0.48 +1.6 542,533 - Synpcc7942_0561 0.48 -0.4 542,533 - Synpcc7942_0561 0.48 +0.4 542,549 + Synpcc7942_0561 0.50 -0.0 542,557 - Synpcc7942_0561 0.51 -0.0 542,563 + Synpcc7942_0561 0.51 +1.6 542,592 + Synpcc7942_0561 0.54 +0.6 542,623 + Synpcc7942_0561 0.57 +1.6 542,623 + Synpcc7942_0561 0.57 +1.0 542,631 - Synpcc7942_0561 0.58 +1.6 542,632 - Synpcc7942_0561 0.58 +0.8 542,708 - Synpcc7942_0561 0.66 +2.6 542,786 - Synpcc7942_0561 0.73 -0.0 542,796 - Synpcc7942_0561 0.74 +0.8 542,809 - Synpcc7942_0561 0.76 -0.0 542,816 + Synpcc7942_0561 0.77 +1.6 542,824 - Synpcc7942_0561 0.77 +0.6 542,892 - Synpcc7942_0561 0.84 +1.6 543,009 + +0.6 543,016 + +0.2 543,018 + -0.4 543,018 + +1.6 543,027 + -0.8 543,049 - +0.6 543,056 + -0.9 543,056 + +0.3 543,056 + -2.2 543,056 + -0.2 543,056 + +1.2 543,064 - +0.6 543,064 - -2.3 543,071 - -0.0 543,071 - +0.7 543,131 + -0.0 543,194 + Synpcc7942_0562 0.12 +0.6 543,202 - Synpcc7942_0562 0.13 +0.6 543,202 - Synpcc7942_0562 0.13 -0.8 543,202 - Synpcc7942_0562 0.13 +1.6 543,202 - Synpcc7942_0562 0.13 -0.7 543,313 + Synpcc7942_0562 0.38 +0.3 543,318 + Synpcc7942_0562 0.39 -2.4 543,319 - Synpcc7942_0562 0.39 -1.8 543,323 + Synpcc7942_0562 0.40 +0.8 543,345 + Synpcc7942_0562 0.45 +2.6 543,363 - Synpcc7942_0562 0.49 +0.2 543,363 - Synpcc7942_0562 0.49 +1.6 543,375 + Synpcc7942_0562 0.51 -0.8 543,382 + Synpcc7942_0562 0.53 -0.0 543,401 - Synpcc7942_0562 0.57 -0.8 543,432 - Synpcc7942_0562 0.64 -0.6 543,442 - Synpcc7942_0562 0.66 +0.2 543,454 + Synpcc7942_0562 0.69 -0.2 543,462 - Synpcc7942_0562 0.70 -0.0 543,483 - Synpcc7942_0562 0.75 -0.0 543,505 + Synpcc7942_0562 0.80 -0.8 543,513 - Synpcc7942_0562 0.82 -0.9 543,518 - Synpcc7942_0562 0.83 -1.0 543,552 + +0.2 543,553 - -0.2 543,554 - -0.1 543,564 + -1.6 543,565 + +0.9 543,572 - +0.6 543,572 - -1.1 543,572 - -0.0 543,590 + +1.0 543,710 - -1.4 543,710 - +1.0 543,821 + -0.3 543,840 - +0.1 543,861 - uvrB Synpcc7942_0563 0.10 -0.3
Or see this region's nucleotide sequence