Experiment: 9:9 LD Cycle Bioreactor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0527 and Synpcc7942_0528 are separated by 354 nucleotides Synpcc7942_0528 and nagB overlap by 36 nucleotides nagB and Synpcc7942_0530 are separated by 3 nucleotides
Synpcc7942_0527: Synpcc7942_0527 - hypothetical protein, at 511,398 to 512,234
_0527
Synpcc7942_0528: Synpcc7942_0528 - Lipopolysaccharide biosynthesis proteins LPS, at 512,589 to 513,578
_0528
Synpcc7942_0529: nagB - 6-phosphogluconolactonase, at 513,543 to 514,331
nagB
Synpcc7942_0530: Synpcc7942_0530 - 4Fe-4S cluster binding, at 514,335 to 515,288
_0530
Position (kb) 512
513
514 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 511.653 kb on + strand, within Synpcc7942_0527 at 511.661 kb on - strand, within Synpcc7942_0527 at 511.671 kb on - strand, within Synpcc7942_0527 at 511.721 kb on - strand, within Synpcc7942_0527 at 511.762 kb on + strand, within Synpcc7942_0527 at 511.763 kb on + strand, within Synpcc7942_0527 at 511.770 kb on - strand, within Synpcc7942_0527 at 511.771 kb on - strand, within Synpcc7942_0527 at 511.771 kb on - strand, within Synpcc7942_0527 at 511.946 kb on - strand, within Synpcc7942_0527 at 511.960 kb on + strand, within Synpcc7942_0527 at 511.964 kb on - strand, within Synpcc7942_0527 at 511.968 kb on - strand, within Synpcc7942_0527 at 512.049 kb on - strand, within Synpcc7942_0527 at 512.068 kb on - strand, within Synpcc7942_0527 at 512.085 kb on + strand, within Synpcc7942_0527 at 512.092 kb on + strand, within Synpcc7942_0527 at 512.092 kb on + strand, within Synpcc7942_0527 at 512.095 kb on + strand, within Synpcc7942_0527 at 512.095 kb on + strand, within Synpcc7942_0527 at 512.100 kb on - strand, within Synpcc7942_0527 at 512.127 kb on - strand, within Synpcc7942_0527 at 512.129 kb on - strand, within Synpcc7942_0527 at 512.139 kb on - strand, within Synpcc7942_0527 at 512.144 kb on + strand, within Synpcc7942_0527 at 512.178 kb on - strand at 512.178 kb on - strand at 512.191 kb on + strand at 512.191 kb on + strand at 512.199 kb on - strand at 512.210 kb on - strand at 512.210 kb on - strand at 512.235 kb on + strand at 512.235 kb on + strand at 512.243 kb on - strand at 512.332 kb on - strand at 512.532 kb on + strand at 512.532 kb on + strand at 512.540 kb on - strand at 512.563 kb on + strand at 512.569 kb on + strand at 512.578 kb on + strand at 512.599 kb on - strand at 512.601 kb on + strand at 512.607 kb on + strand at 512.607 kb on + strand at 512.607 kb on + strand at 512.609 kb on - strand at 512.609 kb on - strand at 512.610 kb on - strand at 512.610 kb on - strand at 512.610 kb on - strand at 512.626 kb on - strand at 512.629 kb on - strand at 512.658 kb on + strand at 512.725 kb on - strand, within Synpcc7942_0528 at 512.757 kb on + strand, within Synpcc7942_0528 at 512.799 kb on - strand, within Synpcc7942_0528 at 512.812 kb on + strand, within Synpcc7942_0528 at 512.814 kb on + strand, within Synpcc7942_0528 at 512.879 kb on - strand, within Synpcc7942_0528 at 512.921 kb on + strand, within Synpcc7942_0528 at 512.943 kb on + strand, within Synpcc7942_0528 at 512.951 kb on - strand, within Synpcc7942_0528 at 512.957 kb on - strand, within Synpcc7942_0528 at 512.962 kb on + strand, within Synpcc7942_0528 at 512.970 kb on - strand, within Synpcc7942_0528 at 512.973 kb on + strand, within Synpcc7942_0528 at 512.983 kb on + strand, within Synpcc7942_0528 at 513.024 kb on + strand, within Synpcc7942_0528 at 513.029 kb on - strand, within Synpcc7942_0528 at 513.049 kb on + strand, within Synpcc7942_0528 at 513.160 kb on - strand, within Synpcc7942_0528 at 513.162 kb on - strand, within Synpcc7942_0528 at 513.171 kb on - strand, within Synpcc7942_0528 at 513.182 kb on + strand, within Synpcc7942_0528 at 513.203 kb on + strand, within Synpcc7942_0528 at 513.249 kb on + strand, within Synpcc7942_0528 at 513.251 kb on + strand, within Synpcc7942_0528 at 513.257 kb on - strand, within Synpcc7942_0528 at 513.262 kb on - strand, within Synpcc7942_0528 at 513.378 kb on + strand, within Synpcc7942_0528 at 513.386 kb on - strand, within Synpcc7942_0528 at 513.386 kb on - strand, within Synpcc7942_0528 at 513.386 kb on - strand, within Synpcc7942_0528 at 513.386 kb on - strand, within Synpcc7942_0528 at 513.416 kb on + strand, within Synpcc7942_0528 at 513.418 kb on - strand, within Synpcc7942_0528 at 513.447 kb on + strand, within Synpcc7942_0528 at 513.460 kb on - strand, within Synpcc7942_0528 at 513.476 kb on - strand, within Synpcc7942_0528 at 513.488 kb on + strand at 513.496 kb on - strand at 513.499 kb on + strand at 513.512 kb on + strand at 513.516 kb on + strand at 513.516 kb on + strand at 513.519 kb on - strand at 513.520 kb on - strand at 513.524 kb on - strand at 513.524 kb on - strand at 513.533 kb on + strand at 513.547 kb on - strand at 513.559 kb on - strand at 513.561 kb on + strand at 513.564 kb on - strand at 513.564 kb on - strand at 513.575 kb on + strand at 513.581 kb on + strand at 513.583 kb on - strand at 513.593 kb on - strand at 513.593 kb on - strand at 513.596 kb on + strand at 513.596 kb on + strand at 513.605 kb on - strand at 513.630 kb on + strand, within nagB at 513.671 kb on - strand, within nagB at 513.693 kb on - strand, within nagB at 513.723 kb on - strand, within nagB at 513.735 kb on + strand, within nagB at 513.754 kb on - strand, within nagB at 513.765 kb on + strand, within nagB at 513.766 kb on - strand, within nagB at 513.775 kb on + strand, within nagB at 513.799 kb on + strand, within nagB at 513.814 kb on - strand, within nagB at 513.816 kb on + strand, within nagB at 513.856 kb on + strand, within nagB at 513.858 kb on - strand, within nagB at 513.908 kb on + strand, within nagB at 513.916 kb on - strand, within nagB at 513.940 kb on - strand, within nagB at 513.990 kb on + strand, within nagB at 513.990 kb on + strand, within nagB at 514.004 kb on - strand, within nagB at 514.019 kb on - strand, within nagB at 514.027 kb on + strand, within nagB at 514.067 kb on - strand, within nagB at 514.080 kb on + strand, within nagB at 514.088 kb on - strand, within nagB at 514.088 kb on - strand, within nagB at 514.094 kb on + strand, within nagB at 514.247 kb on - strand, within nagB at 514.272 kb on - strand at 514.289 kb on + strand at 514.297 kb on - strand at 514.330 kb on + strand at 514.358 kb on + strand at 514.361 kb on - strand at 514.361 kb on - strand at 514.366 kb on - strand at 514.366 kb on - strand at 514.366 kb on - strand at 514.366 kb on - strand at 514.366 kb on - strand at 514.366 kb on - strand at 514.392 kb on - strand at 514.458 kb on + strand, within Synpcc7942_0530 at 514.458 kb on + strand, within Synpcc7942_0530 at 514.458 kb on + strand, within Synpcc7942_0530 at 514.458 kb on + strand, within Synpcc7942_0530 at 514.458 kb on + strand, within Synpcc7942_0530 at 514.466 kb on - strand, within Synpcc7942_0530 at 514.466 kb on - strand, within Synpcc7942_0530 at 514.466 kb on - strand, within Synpcc7942_0530 at 514.466 kb on - strand, within Synpcc7942_0530 at 514.466 kb on - strand, within Synpcc7942_0530 at 514.527 kb on + strand, within Synpcc7942_0530 at 514.540 kb on + strand, within Synpcc7942_0530 at 514.552 kb on - strand, within Synpcc7942_0530 at 514.559 kb on + strand, within Synpcc7942_0530 at 514.561 kb on + strand, within Synpcc7942_0530 at 514.562 kb on - strand, within Synpcc7942_0530 at 514.567 kb on - strand, within Synpcc7942_0530
Per-strain Table
Position Strand Gene LocusTag Fraction 9:9 LD Cycle Bioreactor remove 511,653 + Synpcc7942_0527 0.30 -1.0 511,661 - Synpcc7942_0527 0.31 +0.2 511,671 - Synpcc7942_0527 0.33 -2.8 511,721 - Synpcc7942_0527 0.39 +0.5 511,762 + Synpcc7942_0527 0.43 -0.3 511,763 + Synpcc7942_0527 0.44 +0.9 511,770 - Synpcc7942_0527 0.44 -0.6 511,771 - Synpcc7942_0527 0.45 +2.6 511,771 - Synpcc7942_0527 0.45 -0.3 511,946 - Synpcc7942_0527 0.65 -0.5 511,960 + Synpcc7942_0527 0.67 +0.4 511,964 - Synpcc7942_0527 0.68 -1.4 511,968 - Synpcc7942_0527 0.68 -0.6 512,049 - Synpcc7942_0527 0.78 -0.0 512,068 - Synpcc7942_0527 0.80 +1.6 512,085 + Synpcc7942_0527 0.82 +0.7 512,092 + Synpcc7942_0527 0.83 -0.3 512,092 + Synpcc7942_0527 0.83 +0.1 512,095 + Synpcc7942_0527 0.83 -0.8 512,095 + Synpcc7942_0527 0.83 -0.0 512,100 - Synpcc7942_0527 0.84 -1.0 512,127 - Synpcc7942_0527 0.87 -0.8 512,129 - Synpcc7942_0527 0.87 +0.5 512,139 - Synpcc7942_0527 0.89 -0.4 512,144 + Synpcc7942_0527 0.89 +0.2 512,178 - -1.4 512,178 - +0.7 512,191 + -0.4 512,191 + -1.4 512,199 - +0.2 512,210 - +0.6 512,210 - +0.3 512,235 + +0.7 512,235 + -0.0 512,243 - +2.1 512,332 - -0.5 512,532 + -0.2 512,532 + +1.0 512,540 - -0.6 512,563 + +1.6 512,569 + +0.2 512,578 + -0.4 512,599 - -0.0 512,601 + +1.6 512,607 + +0.1 512,607 + -0.0 512,607 + -2.4 512,609 - -0.8 512,609 - -0.8 512,610 - -0.3 512,610 - -0.4 512,610 - +0.1 512,626 - +0.4 512,629 - +0.3 512,658 + -0.4 512,725 - Synpcc7942_0528 0.14 -1.3 512,757 + Synpcc7942_0528 0.17 -1.8 512,799 - Synpcc7942_0528 0.21 -1.8 512,812 + Synpcc7942_0528 0.23 -1.4 512,814 + Synpcc7942_0528 0.23 -1.7 512,879 - Synpcc7942_0528 0.29 -1.3 512,921 + Synpcc7942_0528 0.34 +1.1 512,943 + Synpcc7942_0528 0.36 -0.3 512,951 - Synpcc7942_0528 0.37 -2.0 512,957 - Synpcc7942_0528 0.37 -0.8 512,962 + Synpcc7942_0528 0.38 -0.0 512,970 - Synpcc7942_0528 0.38 +1.6 512,973 + Synpcc7942_0528 0.39 -1.0 512,983 + Synpcc7942_0528 0.40 -0.0 513,024 + Synpcc7942_0528 0.44 +0.6 513,029 - Synpcc7942_0528 0.44 +0.6 513,049 + Synpcc7942_0528 0.46 +0.6 513,160 - Synpcc7942_0528 0.58 -1.4 513,162 - Synpcc7942_0528 0.58 -0.9 513,171 - Synpcc7942_0528 0.59 -1.0 513,182 + Synpcc7942_0528 0.60 -2.4 513,203 + Synpcc7942_0528 0.62 -0.8 513,249 + Synpcc7942_0528 0.67 -1.4 513,251 + Synpcc7942_0528 0.67 -0.4 513,257 - Synpcc7942_0528 0.67 -1.8 513,262 - Synpcc7942_0528 0.68 -0.8 513,378 + Synpcc7942_0528 0.80 -0.3 513,386 - Synpcc7942_0528 0.81 -1.3 513,386 - Synpcc7942_0528 0.81 +1.2 513,386 - Synpcc7942_0528 0.81 +0.6 513,386 - Synpcc7942_0528 0.81 -1.0 513,416 + Synpcc7942_0528 0.84 -0.0 513,418 - Synpcc7942_0528 0.84 +1.0 513,447 + Synpcc7942_0528 0.87 -1.8 513,460 - Synpcc7942_0528 0.88 +1.6 513,476 - Synpcc7942_0528 0.90 +1.2 513,488 + -0.4 513,496 - +3.1 513,499 + +0.0 513,512 + +0.6 513,516 + -0.6 513,516 + -1.5 513,519 - -1.6 513,520 - -1.2 513,524 - -1.0 513,524 - +0.2 513,533 + -0.6 513,547 - -1.7 513,559 - -0.9 513,561 + +1.6 513,564 - +1.6 513,564 - -0.4 513,575 + +1.6 513,581 + +0.1 513,583 - -0.4 513,593 - +0.6 513,593 - +0.4 513,596 + +0.2 513,596 + -1.9 513,605 - +0.2 513,630 + nagB Synpcc7942_0529 0.11 +0.3 513,671 - nagB Synpcc7942_0529 0.16 +0.7 513,693 - nagB Synpcc7942_0529 0.19 +0.2 513,723 - nagB Synpcc7942_0529 0.23 -0.1 513,735 + nagB Synpcc7942_0529 0.24 -0.5 513,754 - nagB Synpcc7942_0529 0.27 +0.1 513,765 + nagB Synpcc7942_0529 0.28 +0.6 513,766 - nagB Synpcc7942_0529 0.28 +0.6 513,775 + nagB Synpcc7942_0529 0.29 -0.2 513,799 + nagB Synpcc7942_0529 0.32 -0.7 513,814 - nagB Synpcc7942_0529 0.34 -0.2 513,816 + nagB Synpcc7942_0529 0.35 +1.6 513,856 + nagB Synpcc7942_0529 0.40 -0.4 513,858 - nagB Synpcc7942_0529 0.40 -1.4 513,908 + nagB Synpcc7942_0529 0.46 -1.5 513,916 - nagB Synpcc7942_0529 0.47 +0.0 513,940 - nagB Synpcc7942_0529 0.50 +0.6 513,990 + nagB Synpcc7942_0529 0.57 -0.3 513,990 + nagB Synpcc7942_0529 0.57 +1.4 514,004 - nagB Synpcc7942_0529 0.58 -1.0 514,019 - nagB Synpcc7942_0529 0.60 -1.8 514,027 + nagB Synpcc7942_0529 0.61 -0.9 514,067 - nagB Synpcc7942_0529 0.66 -1.0 514,080 + nagB Synpcc7942_0529 0.68 -0.8 514,088 - nagB Synpcc7942_0529 0.69 -0.3 514,088 - nagB Synpcc7942_0529 0.69 -0.2 514,094 + nagB Synpcc7942_0529 0.70 -0.8 514,247 - nagB Synpcc7942_0529 0.89 +0.2 514,272 - -0.0 514,289 + -0.5 514,297 - -0.8 514,330 + -0.5 514,358 + +1.6 514,361 - -1.0 514,361 - -0.1 514,366 - +0.1 514,366 - -0.0 514,366 - -0.0 514,366 - +0.2 514,366 - +0.7 514,366 - -0.6 514,392 - -0.6 514,458 + Synpcc7942_0530 0.13 -0.4 514,458 + Synpcc7942_0530 0.13 +0.6 514,458 + Synpcc7942_0530 0.13 +0.1 514,458 + Synpcc7942_0530 0.13 +0.3 514,458 + Synpcc7942_0530 0.13 -0.8 514,466 - Synpcc7942_0530 0.14 +0.6 514,466 - Synpcc7942_0530 0.14 +0.3 514,466 - Synpcc7942_0530 0.14 +0.3 514,466 - Synpcc7942_0530 0.14 -0.1 514,466 - Synpcc7942_0530 0.14 +0.5 514,527 + Synpcc7942_0530 0.20 +0.6 514,540 + Synpcc7942_0530 0.21 -0.3 514,552 - Synpcc7942_0530 0.23 +0.1 514,559 + Synpcc7942_0530 0.23 +2.6 514,561 + Synpcc7942_0530 0.24 +0.3 514,562 - Synpcc7942_0530 0.24 +1.6 514,567 - Synpcc7942_0530 0.24 +2.6
Or see this region's nucleotide sequence