Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0520

Experiment: 9:9 LD Cycle Bioreactor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0518 and Synpcc7942_0519 are separated by 63 nucleotidesSynpcc7942_0519 and Synpcc7942_0520 are separated by 49 nucleotidesSynpcc7942_0520 and Synpcc7942_0521 are separated by 5 nucleotides Synpcc7942_0518: Synpcc7942_0518 - hypothetical protein, at 504,393 to 505,556 _0518 Synpcc7942_0519: Synpcc7942_0519 - hypothetical protein, at 505,620 to 506,138 _0519 Synpcc7942_0520: Synpcc7942_0520 - hypothetical protein, at 506,188 to 506,829 _0520 Synpcc7942_0521: Synpcc7942_0521 - hypothetical protein, at 506,835 to 507,422 _0521 Position (kb) 506 507Strain fitness (log2 ratio) -2 -1 0 1at 505.383 kb on + strand, within Synpcc7942_0518at 505.424 kb on - strand, within Synpcc7942_0518at 505.480 kb on + strandat 505.480 kb on + strandat 505.488 kb on - strandat 505.548 kb on + strandat 505.548 kb on + strandat 505.550 kb on + strandat 505.556 kb on - strandat 505.568 kb on + strandat 505.576 kb on - strandat 505.576 kb on - strandat 505.579 kb on + strandat 505.601 kb on + strandat 505.607 kb on - strandat 505.609 kb on + strandat 505.632 kb on + strandat 505.680 kb on + strand, within Synpcc7942_0519at 505.696 kb on - strand, within Synpcc7942_0519at 505.725 kb on + strand, within Synpcc7942_0519at 505.781 kb on + strand, within Synpcc7942_0519at 505.789 kb on - strand, within Synpcc7942_0519at 505.796 kb on + strand, within Synpcc7942_0519at 505.796 kb on + strand, within Synpcc7942_0519at 505.804 kb on - strand, within Synpcc7942_0519at 505.804 kb on - strand, within Synpcc7942_0519at 505.804 kb on - strand, within Synpcc7942_0519at 505.813 kb on - strand, within Synpcc7942_0519at 505.819 kb on - strand, within Synpcc7942_0519at 505.829 kb on - strand, within Synpcc7942_0519at 505.841 kb on - strand, within Synpcc7942_0519at 505.864 kb on + strand, within Synpcc7942_0519at 505.883 kb on + strand, within Synpcc7942_0519at 505.887 kb on - strand, within Synpcc7942_0519at 505.889 kb on + strand, within Synpcc7942_0519at 505.916 kb on + strand, within Synpcc7942_0519at 505.989 kb on + strand, within Synpcc7942_0519at 505.997 kb on - strand, within Synpcc7942_0519at 506.004 kb on - strand, within Synpcc7942_0519at 506.015 kb on + strand, within Synpcc7942_0519at 506.043 kb on + strand, within Synpcc7942_0519at 506.099 kb on - strandat 506.099 kb on - strandat 506.099 kb on - strandat 506.111 kb on - strandat 506.111 kb on - strandat 506.139 kb on + strandat 506.185 kb on + strandat 506.194 kb on + strandat 506.271 kb on + strand, within Synpcc7942_0520at 506.290 kb on - strand, within Synpcc7942_0520at 506.290 kb on - strand, within Synpcc7942_0520at 506.291 kb on - strand, within Synpcc7942_0520at 506.370 kb on - strand, within Synpcc7942_0520at 506.372 kb on + strand, within Synpcc7942_0520at 506.372 kb on + strand, within Synpcc7942_0520at 506.373 kb on + strand, within Synpcc7942_0520at 506.375 kb on + strand, within Synpcc7942_0520at 506.380 kb on + strand, within Synpcc7942_0520at 506.380 kb on - strand, within Synpcc7942_0520at 506.452 kb on + strand, within Synpcc7942_0520at 506.470 kb on + strand, within Synpcc7942_0520at 506.470 kb on + strand, within Synpcc7942_0520at 506.475 kb on + strand, within Synpcc7942_0520at 506.478 kb on - strand, within Synpcc7942_0520at 506.478 kb on - strand, within Synpcc7942_0520at 506.478 kb on - strand, within Synpcc7942_0520at 506.479 kb on - strand, within Synpcc7942_0520at 506.554 kb on + strand, within Synpcc7942_0520at 506.564 kb on + strand, within Synpcc7942_0520at 506.565 kb on - strand, within Synpcc7942_0520at 506.602 kb on + strand, within Synpcc7942_0520at 506.603 kb on + strand, within Synpcc7942_0520at 506.631 kb on + strand, within Synpcc7942_0520at 506.636 kb on + strand, within Synpcc7942_0520at 506.639 kb on - strand, within Synpcc7942_0520at 506.671 kb on + strand, within Synpcc7942_0520at 506.684 kb on - strand, within Synpcc7942_0520at 506.686 kb on + strand, within Synpcc7942_0520at 506.686 kb on + strand, within Synpcc7942_0520at 506.694 kb on - strand, within Synpcc7942_0520at 506.694 kb on - strand, within Synpcc7942_0520at 506.721 kb on + strand, within Synpcc7942_0520at 506.721 kb on + strand, within Synpcc7942_0520at 506.745 kb on + strand, within Synpcc7942_0520at 506.767 kb on + strandat 506.774 kb on - strandat 506.774 kb on - strandat 506.784 kb on - strandat 506.790 kb on + strandat 506.832 kb on + strandat 506.842 kb on + strandat 506.842 kb on - strandat 506.850 kb on - strandat 506.887 kb on - strandat 506.887 kb on - strandat 506.905 kb on + strand, within Synpcc7942_0521at 506.913 kb on - strand, within Synpcc7942_0521at 506.916 kb on + strand, within Synpcc7942_0521at 506.917 kb on + strand, within Synpcc7942_0521at 506.937 kb on + strand, within Synpcc7942_0521at 506.942 kb on + strand, within Synpcc7942_0521at 506.945 kb on - strand, within Synpcc7942_0521at 506.957 kb on + strand, within Synpcc7942_0521at 506.965 kb on - strand, within Synpcc7942_0521at 506.965 kb on - strand, within Synpcc7942_0521at 506.967 kb on + strand, within Synpcc7942_0521at 506.972 kb on + strand, within Synpcc7942_0521at 506.977 kb on + strand, within Synpcc7942_0521at 506.982 kb on + strand, within Synpcc7942_0521at 506.985 kb on - strand, within Synpcc7942_0521at 506.990 kb on - strand, within Synpcc7942_0521at 507.007 kb on + strand, within Synpcc7942_0521at 507.012 kb on + strand, within Synpcc7942_0521at 507.020 kb on - strand, within Synpcc7942_0521at 507.022 kb on + strand, within Synpcc7942_0521at 507.043 kb on - strand, within Synpcc7942_0521at 507.057 kb on + strand, within Synpcc7942_0521at 507.067 kb on - strand, within Synpcc7942_0521at 507.077 kb on + strand, within Synpcc7942_0521at 507.077 kb on + strand, within Synpcc7942_0521at 507.095 kb on - strand, within Synpcc7942_0521at 507.135 kb on - strand, within Synpcc7942_0521at 507.135 kb on - strand, within Synpcc7942_0521at 507.162 kb on + strand, within Synpcc7942_0521at 507.207 kb on + strand, within Synpcc7942_0521at 507.232 kb on + strand, within Synpcc7942_0521at 507.239 kb on + strand, within Synpcc7942_0521at 507.239 kb on + strand, within Synpcc7942_0521at 507.252 kb on + strand, within Synpcc7942_0521at 507.270 kb on - strand, within Synpcc7942_0521at 507.287 kb on - strand, within Synpcc7942_0521at 507.327 kb on - strand, within Synpcc7942_0521at 507.330 kb on - strand, within Synpcc7942_0521at 507.344 kb on + strand, within Synpcc7942_0521at 507.344 kb on + strand, within Synpcc7942_0521at 507.353 kb on + strand, within Synpcc7942_0521at 507.354 kb on + strand, within Synpcc7942_0521at 507.354 kb on + strand, within Synpcc7942_0521at 507.371 kb on + strandat 507.379 kb on - strandat 507.386 kb on - strandat 507.386 kb on - strandat 507.393 kb on + strandat 507.549 kb on - strandat 507.559 kb on - strandat 507.618 kb on + strandat 507.719 kb on + strandat 507.727 kb on - strandat 507.727 kb on - strandat 507.727 kb on - strandat 507.727 kb on - strandat 507.745 kb on + strandat 507.755 kb on + strandat 507.755 kb on + strandat 507.763 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 9:9 LD Cycle Bioreactor
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505,383 + Synpcc7942_0518 0.85 +0.6
505,424 - Synpcc7942_0518 0.89 -0.0
505,480 + +0.6
505,480 + +1.0
505,488 - -0.0
505,548 + -0.0
505,548 + +0.4
505,550 + +0.3
505,556 - +0.6
505,568 + -0.3
505,576 - +0.1
505,576 - -0.9
505,579 + -0.1
505,601 + +0.8
505,607 - -0.2
505,609 + +0.6
505,632 + -0.0
505,680 + Synpcc7942_0519 0.12 -0.9
505,696 - Synpcc7942_0519 0.15 +0.1
505,725 + Synpcc7942_0519 0.20 +0.6
505,781 + Synpcc7942_0519 0.31 +0.1
505,789 - Synpcc7942_0519 0.33 +0.2
505,796 + Synpcc7942_0519 0.34 -0.2
505,796 + Synpcc7942_0519 0.34 -0.4
505,804 - Synpcc7942_0519 0.35 -0.6
505,804 - Synpcc7942_0519 0.35 -0.5
505,804 - Synpcc7942_0519 0.35 -0.4
505,813 - Synpcc7942_0519 0.37 -0.2
505,819 - Synpcc7942_0519 0.38 -0.2
505,829 - Synpcc7942_0519 0.40 +0.7
505,841 - Synpcc7942_0519 0.43 -0.0
505,864 + Synpcc7942_0519 0.47 +0.6
505,883 + Synpcc7942_0519 0.51 -2.6
505,887 - Synpcc7942_0519 0.51 +1.1
505,889 + Synpcc7942_0519 0.52 -0.4
505,916 + Synpcc7942_0519 0.57 -1.3
505,989 + Synpcc7942_0519 0.71 +0.6
505,997 - Synpcc7942_0519 0.73 -0.0
506,004 - Synpcc7942_0519 0.74 -1.4
506,015 + Synpcc7942_0519 0.76 +0.6
506,043 + Synpcc7942_0519 0.82 -0.9
506,099 - +0.8
506,099 - -0.7
506,099 - +0.5
506,111 - -0.3
506,111 - -0.5
506,139 + -0.1
506,185 + -0.1
506,194 + -0.5
506,271 + Synpcc7942_0520 0.13 +1.6
506,290 - Synpcc7942_0520 0.16 -0.4
506,290 - Synpcc7942_0520 0.16 -1.2
506,291 - Synpcc7942_0520 0.16 +1.0
506,370 - Synpcc7942_0520 0.28 +0.0
506,372 + Synpcc7942_0520 0.29 -0.1
506,372 + Synpcc7942_0520 0.29 -0.7
506,373 + Synpcc7942_0520 0.29 -1.3
506,375 + Synpcc7942_0520 0.29 -0.0
506,380 + Synpcc7942_0520 0.30 -0.0
506,380 - Synpcc7942_0520 0.30 -2.3
506,452 + Synpcc7942_0520 0.41 -0.3
506,470 + Synpcc7942_0520 0.44 +0.6
506,470 + Synpcc7942_0520 0.44 +1.0
506,475 + Synpcc7942_0520 0.45 +0.1
506,478 - Synpcc7942_0520 0.45 -0.6
506,478 - Synpcc7942_0520 0.45 -0.0
506,478 - Synpcc7942_0520 0.45 -0.0
506,479 - Synpcc7942_0520 0.45 -1.4
506,554 + Synpcc7942_0520 0.57 -2.1
506,564 + Synpcc7942_0520 0.59 -1.2
506,565 - Synpcc7942_0520 0.59 -0.9
506,602 + Synpcc7942_0520 0.64 +0.3
506,603 + Synpcc7942_0520 0.65 -0.4
506,631 + Synpcc7942_0520 0.69 +1.1
506,636 + Synpcc7942_0520 0.70 -0.4
506,639 - Synpcc7942_0520 0.70 -1.4
506,671 + Synpcc7942_0520 0.75 -0.2
506,684 - Synpcc7942_0520 0.77 -2.1
506,686 + Synpcc7942_0520 0.78 +0.6
506,686 + Synpcc7942_0520 0.78 -1.3
506,694 - Synpcc7942_0520 0.79 +0.2
506,694 - Synpcc7942_0520 0.79 -0.5
506,721 + Synpcc7942_0520 0.83 -0.4
506,721 + Synpcc7942_0520 0.83 -1.6
506,745 + Synpcc7942_0520 0.87 -0.0
506,767 + -1.3
506,774 - -0.4
506,774 - -1.1
506,784 - -0.8
506,790 + +0.5
506,832 + +0.1
506,842 + -0.4
506,842 - -0.2
506,850 - -0.2
506,887 - -0.4
506,887 - -1.2
506,905 + Synpcc7942_0521 0.12 -0.6
506,913 - Synpcc7942_0521 0.13 +0.6
506,916 + Synpcc7942_0521 0.14 -0.4
506,917 + Synpcc7942_0521 0.14 -1.1
506,937 + Synpcc7942_0521 0.17 -0.7
506,942 + Synpcc7942_0521 0.18 -1.3
506,945 - Synpcc7942_0521 0.19 -0.4
506,957 + Synpcc7942_0521 0.21 -0.0
506,965 - Synpcc7942_0521 0.22 -0.4
506,965 - Synpcc7942_0521 0.22 +0.7
506,967 + Synpcc7942_0521 0.22 +0.1
506,972 + Synpcc7942_0521 0.23 -0.4
506,977 + Synpcc7942_0521 0.24 -1.7
506,982 + Synpcc7942_0521 0.25 +1.6
506,985 - Synpcc7942_0521 0.26 -0.5
506,990 - Synpcc7942_0521 0.26 +1.6
507,007 + Synpcc7942_0521 0.29 -1.4
507,012 + Synpcc7942_0521 0.30 -0.1
507,020 - Synpcc7942_0521 0.31 -1.0
507,022 + Synpcc7942_0521 0.32 -0.7
507,043 - Synpcc7942_0521 0.35 -0.8
507,057 + Synpcc7942_0521 0.38 -0.4
507,067 - Synpcc7942_0521 0.39 -0.7
507,077 + Synpcc7942_0521 0.41 -0.2
507,077 + Synpcc7942_0521 0.41 -1.2
507,095 - Synpcc7942_0521 0.44 -1.1
507,135 - Synpcc7942_0521 0.51 -0.4
507,135 - Synpcc7942_0521 0.51 +1.6
507,162 + Synpcc7942_0521 0.56 -0.6
507,207 + Synpcc7942_0521 0.63 -0.4
507,232 + Synpcc7942_0521 0.68 -1.3
507,239 + Synpcc7942_0521 0.69 +0.2
507,239 + Synpcc7942_0521 0.69 -0.1
507,252 + Synpcc7942_0521 0.71 -0.0
507,270 - Synpcc7942_0521 0.74 -0.4
507,287 - Synpcc7942_0521 0.77 +1.6
507,327 - Synpcc7942_0521 0.84 +1.0
507,330 - Synpcc7942_0521 0.84 -0.0
507,344 + Synpcc7942_0521 0.87 -0.4
507,344 + Synpcc7942_0521 0.87 -1.6
507,353 + Synpcc7942_0521 0.88 +0.2
507,354 + Synpcc7942_0521 0.88 -0.2
507,354 + Synpcc7942_0521 0.88 -1.1
507,371 + +0.1
507,379 - -0.0
507,386 - -0.6
507,386 - +0.6
507,393 + -1.3
507,549 - -0.4
507,559 - -1.1
507,618 + -0.4
507,719 + +0.6
507,727 - +0.4
507,727 - +0.6
507,727 - +0.5
507,727 - +0.6
507,745 + -0.4
507,755 + -0.0
507,755 + -1.3
507,763 - +0.7

Or see this region's nucleotide sequence