Experiment: 9:9 LD Cycle Bioreactor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pqqE and rpoD4 are separated by 0 nucleotides rpoD4 and ycf63 are separated by 325 nucleotides ycf63 and Synpcc7942_0379 are separated by 53 nucleotides Synpcc7942_0379 and Synpcc7942_0380 are separated by 21 nucleotides
Synpcc7942_0376: pqqE - putative zinc protease protein, at 370,341 to 371,867
pqqE
Synpcc7942_0377: rpoD4 - hypothetical protein, at 371,868 to 372,206
rpoD4
Synpcc7942_0378: ycf63 - Protein of unknown function DUF140, at 372,532 to 373,326
ycf63
Synpcc7942_0379: Synpcc7942_0379 - hypothetical protein, at 373,380 to 373,763
_0379
Synpcc7942_0380: Synpcc7942_0380 - hypothetical protein, at 373,785 to 374,828
_0380
Position (kb) 372
373
374 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 371.541 kb on - strand, within pqqE at 371.560 kb on - strand, within pqqE at 371.560 kb on - strand, within pqqE at 371.589 kb on - strand, within pqqE at 371.596 kb on + strand, within pqqE at 371.628 kb on + strand, within pqqE at 371.628 kb on + strand, within pqqE at 371.628 kb on + strand, within pqqE at 371.631 kb on - strand, within pqqE at 371.636 kb on - strand, within pqqE at 371.636 kb on - strand, within pqqE at 371.636 kb on - strand, within pqqE at 371.636 kb on - strand, within pqqE at 371.636 kb on - strand, within pqqE at 371.636 kb on - strand, within pqqE at 371.638 kb on + strand, within pqqE at 371.638 kb on - strand, within pqqE at 371.643 kb on + strand, within pqqE at 371.663 kb on + strand, within pqqE at 371.678 kb on + strand, within pqqE at 371.730 kb on - strand at 371.730 kb on - strand at 371.730 kb on - strand at 371.808 kb on - strand at 371.826 kb on - strand at 371.831 kb on - strand at 371.846 kb on + strand at 371.847 kb on + strand at 371.847 kb on + strand at 371.847 kb on + strand at 371.855 kb on - strand at 371.894 kb on + strand at 371.895 kb on + strand at 371.902 kb on - strand, within rpoD4 at 371.902 kb on - strand, within rpoD4 at 371.916 kb on + strand, within rpoD4 at 371.973 kb on + strand, within rpoD4 at 371.980 kb on - strand, within rpoD4 at 371.992 kb on - strand, within rpoD4 at 372.017 kb on + strand, within rpoD4 at 372.054 kb on + strand, within rpoD4 at 372.064 kb on + strand, within rpoD4 at 372.072 kb on - strand, within rpoD4 at 372.159 kb on - strand, within rpoD4 at 372.177 kb on + strand at 372.209 kb on - strand at 372.290 kb on + strand at 372.353 kb on + strand at 372.360 kb on + strand at 372.363 kb on - strand at 372.385 kb on + strand at 372.393 kb on - strand at 372.395 kb on + strand at 372.395 kb on + strand at 372.409 kb on + strand at 372.409 kb on + strand at 372.409 kb on + strand at 372.484 kb on + strand at 372.489 kb on + strand at 372.492 kb on - strand at 372.497 kb on - strand at 372.511 kb on + strand at 372.516 kb on - strand at 372.520 kb on - strand at 372.534 kb on + strand at 372.544 kb on + strand at 372.544 kb on + strand at 372.552 kb on - strand at 372.552 kb on - strand at 372.552 kb on - strand at 372.562 kb on - strand at 372.642 kb on + strand, within ycf63 at 372.642 kb on + strand, within ycf63 at 372.676 kb on - strand, within ycf63 at 372.680 kb on + strand, within ycf63 at 372.687 kb on + strand, within ycf63 at 372.695 kb on - strand, within ycf63 at 372.707 kb on - strand, within ycf63 at 372.708 kb on - strand, within ycf63 at 372.717 kb on - strand, within ycf63 at 372.732 kb on - strand, within ycf63 at 372.796 kb on - strand, within ycf63 at 372.802 kb on + strand, within ycf63 at 372.876 kb on + strand, within ycf63 at 372.913 kb on + strand, within ycf63 at 372.919 kb on + strand, within ycf63 at 372.927 kb on + strand, within ycf63 at 372.931 kb on + strand, within ycf63 at 372.950 kb on - strand, within ycf63 at 372.971 kb on + strand, within ycf63 at 372.995 kb on + strand, within ycf63 at 372.995 kb on + strand, within ycf63 at 373.003 kb on - strand, within ycf63 at 373.003 kb on - strand, within ycf63 at 373.019 kb on - strand, within ycf63 at 373.119 kb on - strand, within ycf63 at 373.120 kb on + strand, within ycf63 at 373.125 kb on + strand, within ycf63 at 373.133 kb on - strand, within ycf63 at 373.179 kb on - strand, within ycf63 at 373.196 kb on + strand, within ycf63 at 373.203 kb on + strand, within ycf63 at 373.231 kb on + strand, within ycf63 at 373.231 kb on - strand, within ycf63 at 373.271 kb on - strand at 373.292 kb on - strand at 373.320 kb on + strand at 373.328 kb on - strand at 373.329 kb on - strand at 373.329 kb on - strand at 373.333 kb on - strand at 373.346 kb on + strand at 373.354 kb on - strand at 373.356 kb on + strand at 373.415 kb on + strand at 373.418 kb on - strand at 373.423 kb on - strand, within Synpcc7942_0379 at 373.440 kb on - strand, within Synpcc7942_0379 at 373.502 kb on - strand, within Synpcc7942_0379 at 373.502 kb on - strand, within Synpcc7942_0379 at 373.502 kb on - strand, within Synpcc7942_0379 at 373.502 kb on - strand, within Synpcc7942_0379 at 373.519 kb on - strand, within Synpcc7942_0379 at 373.539 kb on - strand, within Synpcc7942_0379 at 373.539 kb on - strand, within Synpcc7942_0379 at 373.561 kb on - strand, within Synpcc7942_0379 at 373.610 kb on + strand, within Synpcc7942_0379 at 373.657 kb on - strand, within Synpcc7942_0379 at 373.715 kb on - strand, within Synpcc7942_0379 at 373.725 kb on - strand at 373.752 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 9:9 LD Cycle Bioreactor remove 371,541 - pqqE Synpcc7942_0376 0.79 -0.1 371,560 - pqqE Synpcc7942_0376 0.80 -0.9 371,560 - pqqE Synpcc7942_0376 0.80 +0.0 371,589 - pqqE Synpcc7942_0376 0.82 -0.3 371,596 + pqqE Synpcc7942_0376 0.82 -0.0 371,628 + pqqE Synpcc7942_0376 0.84 -0.0 371,628 + pqqE Synpcc7942_0376 0.84 +0.1 371,628 + pqqE Synpcc7942_0376 0.84 +1.2 371,631 - pqqE Synpcc7942_0376 0.84 -0.0 371,636 - pqqE Synpcc7942_0376 0.85 -0.4 371,636 - pqqE Synpcc7942_0376 0.85 +0.1 371,636 - pqqE Synpcc7942_0376 0.85 -0.5 371,636 - pqqE Synpcc7942_0376 0.85 +1.0 371,636 - pqqE Synpcc7942_0376 0.85 -0.7 371,636 - pqqE Synpcc7942_0376 0.85 +1.5 371,638 + pqqE Synpcc7942_0376 0.85 -1.9 371,638 - pqqE Synpcc7942_0376 0.85 +1.1 371,643 + pqqE Synpcc7942_0376 0.85 +0.6 371,663 + pqqE Synpcc7942_0376 0.87 -0.8 371,678 + pqqE Synpcc7942_0376 0.88 +0.7 371,730 - -0.7 371,730 - -0.5 371,730 - +0.1 371,808 - +0.4 371,826 - +0.1 371,831 - -2.2 371,846 + -1.1 371,847 + +0.1 371,847 + +0.5 371,847 + -1.2 371,855 - +2.5 371,894 + +0.2 371,895 + +0.4 371,902 - rpoD4 Synpcc7942_0377 0.10 -0.3 371,902 - rpoD4 Synpcc7942_0377 0.10 +0.5 371,916 + rpoD4 Synpcc7942_0377 0.14 -1.5 371,973 + rpoD4 Synpcc7942_0377 0.31 -0.3 371,980 - rpoD4 Synpcc7942_0377 0.33 +0.1 371,992 - rpoD4 Synpcc7942_0377 0.37 +0.8 372,017 + rpoD4 Synpcc7942_0377 0.44 +0.1 372,054 + rpoD4 Synpcc7942_0377 0.55 +0.8 372,064 + rpoD4 Synpcc7942_0377 0.58 +0.6 372,072 - rpoD4 Synpcc7942_0377 0.60 +1.5 372,159 - rpoD4 Synpcc7942_0377 0.86 +0.0 372,177 + -0.2 372,209 - +0.3 372,290 + -0.1 372,353 + +0.1 372,360 + -0.3 372,363 - -0.5 372,385 + +1.9 372,393 - -0.4 372,395 + +2.5 372,395 + -0.0 372,409 + -0.2 372,409 + +0.8 372,409 + +3.1 372,484 + +1.5 372,489 + -0.5 372,492 - +0.4 372,497 - +0.0 372,511 + +0.1 372,516 - +1.5 372,520 - +0.7 372,534 + -0.0 372,544 + -1.6 372,544 + -0.2 372,552 - -0.0 372,552 - -0.3 372,552 - -1.6 372,562 - +0.1 372,642 + ycf63 Synpcc7942_0378 0.14 +0.5 372,642 + ycf63 Synpcc7942_0378 0.14 -0.5 372,676 - ycf63 Synpcc7942_0378 0.18 -0.8 372,680 + ycf63 Synpcc7942_0378 0.19 -1.3 372,687 + ycf63 Synpcc7942_0378 0.19 +1.5 372,695 - ycf63 Synpcc7942_0378 0.21 +1.5 372,707 - ycf63 Synpcc7942_0378 0.22 -1.1 372,708 - ycf63 Synpcc7942_0378 0.22 +0.5 372,717 - ycf63 Synpcc7942_0378 0.23 +2.5 372,732 - ycf63 Synpcc7942_0378 0.25 +1.5 372,796 - ycf63 Synpcc7942_0378 0.33 -0.3 372,802 + ycf63 Synpcc7942_0378 0.34 -0.0 372,876 + ycf63 Synpcc7942_0378 0.43 -2.2 372,913 + ycf63 Synpcc7942_0378 0.48 -0.5 372,919 + ycf63 Synpcc7942_0378 0.49 -0.3 372,927 + ycf63 Synpcc7942_0378 0.50 +1.5 372,931 + ycf63 Synpcc7942_0378 0.50 +1.5 372,950 - ycf63 Synpcc7942_0378 0.53 -0.0 372,971 + ycf63 Synpcc7942_0378 0.55 -0.0 372,995 + ycf63 Synpcc7942_0378 0.58 -1.0 372,995 + ycf63 Synpcc7942_0378 0.58 -1.5 373,003 - ycf63 Synpcc7942_0378 0.59 +0.5 373,003 - ycf63 Synpcc7942_0378 0.59 -0.0 373,019 - ycf63 Synpcc7942_0378 0.61 +1.8 373,119 - ycf63 Synpcc7942_0378 0.74 +0.5 373,120 + ycf63 Synpcc7942_0378 0.74 -0.5 373,125 + ycf63 Synpcc7942_0378 0.75 -1.6 373,133 - ycf63 Synpcc7942_0378 0.76 +1.5 373,179 - ycf63 Synpcc7942_0378 0.81 +0.5 373,196 + ycf63 Synpcc7942_0378 0.84 +0.2 373,203 + ycf63 Synpcc7942_0378 0.84 -0.0 373,231 + ycf63 Synpcc7942_0378 0.88 +0.8 373,231 - ycf63 Synpcc7942_0378 0.88 -1.3 373,271 - +0.5 373,292 - -0.8 373,320 + +2.3 373,328 - -0.2 373,329 - -0.1 373,329 - -0.3 373,333 - +0.3 373,346 + -0.1 373,354 - +1.0 373,356 + -0.0 373,415 + +1.5 373,418 - +0.5 373,423 - Synpcc7942_0379 0.11 +2.5 373,440 - Synpcc7942_0379 0.16 +1.5 373,502 - Synpcc7942_0379 0.32 -1.8 373,502 - Synpcc7942_0379 0.32 +1.0 373,502 - Synpcc7942_0379 0.32 -0.2 373,502 - Synpcc7942_0379 0.32 -1.0 373,519 - Synpcc7942_0379 0.36 -0.0 373,539 - Synpcc7942_0379 0.41 -0.2 373,539 - Synpcc7942_0379 0.41 -0.2 373,561 - Synpcc7942_0379 0.47 +0.5 373,610 + Synpcc7942_0379 0.60 -0.5 373,657 - Synpcc7942_0379 0.72 +0.4 373,715 - Synpcc7942_0379 0.87 -0.5 373,725 - -0.3 373,752 - +0.2
Or see this region's nucleotide sequence