Experiment: 9:9 LD Cycle Bioreactor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0182 and Synpcc7942_0183 are separated by 196 nucleotides Synpcc7942_0183 and pit overlap by 4 nucleotides
Synpcc7942_0182: Synpcc7942_0182 - hypothetical protein, at 180,156 to 180,881
_0182
Synpcc7942_0183: Synpcc7942_0183 - hypothetical protein, at 181,078 to 181,467
_0183
Synpcc7942_0184: pit - putative phosphate permease, at 181,464 to 182,555
pit
Position (kb) 181
182 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 180.169 kb on + strand at 180.199 kb on + strand at 180.199 kb on + strand at 180.207 kb on - strand at 180.324 kb on + strand, within Synpcc7942_0182 at 180.332 kb on - strand, within Synpcc7942_0182 at 180.517 kb on - strand, within Synpcc7942_0182 at 180.527 kb on + strand, within Synpcc7942_0182 at 180.544 kb on + strand, within Synpcc7942_0182 at 180.562 kb on + strand, within Synpcc7942_0182 at 180.565 kb on - strand, within Synpcc7942_0182 at 180.651 kb on - strand, within Synpcc7942_0182 at 180.689 kb on + strand, within Synpcc7942_0182 at 180.689 kb on + strand, within Synpcc7942_0182 at 180.697 kb on - strand, within Synpcc7942_0182 at 180.697 kb on - strand, within Synpcc7942_0182 at 180.739 kb on + strand, within Synpcc7942_0182 at 180.745 kb on + strand, within Synpcc7942_0182 at 180.755 kb on + strand, within Synpcc7942_0182 at 180.755 kb on + strand, within Synpcc7942_0182 at 180.785 kb on - strand, within Synpcc7942_0182 at 180.791 kb on + strand, within Synpcc7942_0182 at 180.804 kb on - strand, within Synpcc7942_0182 at 180.869 kb on + strand at 180.874 kb on - strand at 180.877 kb on - strand at 180.879 kb on - strand at 180.879 kb on - strand at 180.879 kb on - strand at 180.938 kb on - strand at 181.062 kb on + strand at 181.078 kb on + strand at 181.093 kb on - strand at 181.147 kb on - strand, within Synpcc7942_0183 at 181.152 kb on - strand, within Synpcc7942_0183 at 181.181 kb on - strand, within Synpcc7942_0183 at 181.228 kb on + strand, within Synpcc7942_0183 at 181.236 kb on - strand, within Synpcc7942_0183 at 181.236 kb on - strand, within Synpcc7942_0183 at 181.241 kb on - strand, within Synpcc7942_0183 at 181.266 kb on + strand, within Synpcc7942_0183 at 181.266 kb on + strand, within Synpcc7942_0183 at 181.266 kb on + strand, within Synpcc7942_0183 at 181.274 kb on - strand, within Synpcc7942_0183 at 181.274 kb on - strand, within Synpcc7942_0183 at 181.274 kb on - strand, within Synpcc7942_0183 at 181.286 kb on + strand, within Synpcc7942_0183 at 181.286 kb on + strand, within Synpcc7942_0183 at 181.307 kb on + strand, within Synpcc7942_0183 at 181.321 kb on + strand, within Synpcc7942_0183 at 181.344 kb on - strand, within Synpcc7942_0183 at 181.357 kb on + strand, within Synpcc7942_0183 at 181.357 kb on + strand, within Synpcc7942_0183 at 181.357 kb on + strand, within Synpcc7942_0183 at 181.365 kb on - strand, within Synpcc7942_0183 at 181.381 kb on + strand, within Synpcc7942_0183 at 181.398 kb on - strand, within Synpcc7942_0183 at 181.417 kb on - strand, within Synpcc7942_0183 at 181.428 kb on + strand, within Synpcc7942_0183 at 181.428 kb on + strand, within Synpcc7942_0183 at 181.429 kb on - strand at 181.477 kb on + strand at 181.477 kb on + strand at 181.477 kb on + strand at 181.487 kb on + strand at 181.513 kb on + strand at 181.513 kb on + strand at 181.513 kb on + strand at 181.513 kb on + strand at 181.513 kb on + strand at 181.513 kb on + strand at 181.521 kb on - strand at 181.521 kb on - strand at 181.521 kb on - strand at 181.521 kb on - strand at 181.521 kb on - strand at 181.521 kb on - strand at 181.526 kb on + strand at 181.527 kb on - strand at 181.529 kb on - strand at 181.545 kb on - strand at 181.555 kb on - strand at 181.557 kb on + strand at 181.565 kb on - strand at 181.565 kb on - strand at 181.589 kb on + strand, within pit at 181.590 kb on + strand, within pit at 181.597 kb on + strand, within pit at 181.598 kb on - strand, within pit at 181.605 kb on - strand, within pit at 181.709 kb on + strand, within pit at 181.709 kb on + strand, within pit at 181.709 kb on + strand, within pit at 181.717 kb on - strand, within pit at 181.719 kb on + strand, within pit at 181.722 kb on - strand, within pit at 181.725 kb on + strand, within pit at 181.726 kb on + strand, within pit at 181.732 kb on - strand, within pit at 181.733 kb on - strand at 181.734 kb on - strand, within pit at 181.741 kb on - strand, within pit at 181.754 kb on + strand, within pit at 181.762 kb on - strand, within pit at 181.770 kb on + strand, within pit at 181.778 kb on - strand at 181.783 kb on - strand, within pit at 181.790 kb on + strand, within pit at 181.806 kb on - strand, within pit at 181.806 kb on - strand, within pit at 181.806 kb on - strand, within pit at 181.811 kb on - strand, within pit at 181.811 kb on - strand, within pit at 181.821 kb on - strand, within pit at 181.822 kb on + strand, within pit at 181.843 kb on - strand, within pit at 181.859 kb on + strand, within pit at 181.859 kb on + strand, within pit at 181.859 kb on + strand, within pit at 181.859 kb on + strand, within pit at 181.867 kb on - strand, within pit at 181.867 kb on - strand, within pit at 181.867 kb on - strand, within pit at 181.867 kb on - strand, within pit at 181.874 kb on + strand, within pit at 181.874 kb on + strand, within pit at 181.874 kb on + strand, within pit at 181.874 kb on + strand, within pit at 181.882 kb on - strand, within pit at 181.882 kb on - strand, within pit at 181.882 kb on - strand, within pit at 181.882 kb on - strand, within pit at 181.918 kb on + strand, within pit at 181.918 kb on + strand, within pit at 181.941 kb on + strand, within pit at 181.944 kb on + strand, within pit at 181.951 kb on + strand at 181.951 kb on + strand, within pit at 181.956 kb on + strand, within pit at 181.961 kb on + strand, within pit at 181.961 kb on + strand, within pit at 181.961 kb on + strand, within pit at 181.961 kb on + strand, within pit at 181.969 kb on - strand, within pit at 181.969 kb on - strand, within pit at 181.969 kb on - strand, within pit at 181.969 kb on - strand, within pit at 181.969 kb on - strand, within pit at 181.981 kb on - strand, within pit at 182.004 kb on + strand, within pit at 182.004 kb on + strand, within pit at 182.004 kb on + strand, within pit at 182.013 kb on - strand, within pit at 182.016 kb on + strand, within pit at 182.037 kb on + strand, within pit at 182.042 kb on + strand, within pit at 182.045 kb on - strand, within pit at 182.050 kb on - strand, within pit at 182.055 kb on - strand, within pit at 182.060 kb on - strand, within pit at 182.064 kb on - strand, within pit at 182.088 kb on + strand, within pit at 182.089 kb on + strand, within pit at 182.109 kb on - strand, within pit at 182.120 kb on + strand, within pit at 182.122 kb on + strand, within pit at 182.135 kb on + strand, within pit at 182.154 kb on + strand, within pit at 182.154 kb on + strand, within pit at 182.154 kb on + strand, within pit at 182.162 kb on - strand, within pit at 182.168 kb on + strand, within pit at 182.168 kb on + strand at 182.176 kb on - strand, within pit at 182.176 kb on - strand, within pit at 182.187 kb on - strand, within pit at 182.189 kb on + strand, within pit at 182.206 kb on + strand, within pit at 182.212 kb on + strand, within pit at 182.212 kb on + strand, within pit at 182.212 kb on + strand, within pit at 182.214 kb on - strand, within pit at 182.214 kb on - strand, within pit at 182.225 kb on + strand, within pit at 182.265 kb on - strand, within pit at 182.268 kb on + strand, within pit at 182.268 kb on + strand, within pit at 182.269 kb on + strand, within pit at 182.269 kb on + strand, within pit at 182.269 kb on + strand, within pit at 182.269 kb on + strand, within pit at 182.269 kb on + strand, within pit at 182.276 kb on - strand, within pit at 182.283 kb on - strand, within pit at 182.286 kb on + strand, within pit at 182.286 kb on + strand, within pit at 182.286 kb on + strand, within pit at 182.293 kb on - strand at 182.294 kb on - strand at 182.313 kb on + strand, within pit at 182.321 kb on - strand, within pit at 182.321 kb on - strand, within pit at 182.326 kb on + strand, within pit at 182.336 kb on + strand, within pit at 182.336 kb on + strand, within pit at 182.346 kb on + strand, within pit at 182.373 kb on - strand, within pit at 182.442 kb on + strand, within pit at 182.442 kb on + strand, within pit at 182.445 kb on - strand, within pit
Per-strain Table
Position Strand Gene LocusTag Fraction 9:9 LD Cycle Bioreactor remove 180,169 + +0.5 180,199 + -0.8 180,199 + +0.4 180,207 - +1.2 180,324 + Synpcc7942_0182 0.23 +0.8 180,332 - Synpcc7942_0182 0.24 +0.5 180,517 - Synpcc7942_0182 0.50 +0.5 180,527 + Synpcc7942_0182 0.51 -0.9 180,544 + Synpcc7942_0182 0.53 +0.1 180,562 + Synpcc7942_0182 0.56 -0.3 180,565 - Synpcc7942_0182 0.56 +0.7 180,651 - Synpcc7942_0182 0.68 -1.0 180,689 + Synpcc7942_0182 0.73 -0.7 180,689 + Synpcc7942_0182 0.73 +0.0 180,697 - Synpcc7942_0182 0.75 -0.1 180,697 - Synpcc7942_0182 0.75 -0.1 180,739 + Synpcc7942_0182 0.80 +0.0 180,745 + Synpcc7942_0182 0.81 -0.1 180,755 + Synpcc7942_0182 0.83 +0.5 180,755 + Synpcc7942_0182 0.83 +0.9 180,785 - Synpcc7942_0182 0.87 +0.2 180,791 + Synpcc7942_0182 0.87 -0.4 180,804 - Synpcc7942_0182 0.89 +0.3 180,869 + -0.0 180,874 - +1.5 180,877 - -1.4 180,879 - -0.1 180,879 - -0.1 180,879 - -0.8 180,938 - -1.3 181,062 + -0.1 181,078 + +0.1 181,093 - -0.5 181,147 - Synpcc7942_0183 0.18 -1.8 181,152 - Synpcc7942_0183 0.19 -1.5 181,181 - Synpcc7942_0183 0.26 -0.1 181,228 + Synpcc7942_0183 0.38 +1.1 181,236 - Synpcc7942_0183 0.41 +1.9 181,236 - Synpcc7942_0183 0.41 +0.5 181,241 - Synpcc7942_0183 0.42 -0.1 181,266 + Synpcc7942_0183 0.48 -0.9 181,266 + Synpcc7942_0183 0.48 -1.7 181,266 + Synpcc7942_0183 0.48 -0.4 181,274 - Synpcc7942_0183 0.50 -0.7 181,274 - Synpcc7942_0183 0.50 -1.3 181,274 - Synpcc7942_0183 0.50 +0.0 181,286 + Synpcc7942_0183 0.53 -0.9 181,286 + Synpcc7942_0183 0.53 +0.2 181,307 + Synpcc7942_0183 0.59 -2.3 181,321 + Synpcc7942_0183 0.62 -0.5 181,344 - Synpcc7942_0183 0.68 +0.5 181,357 + Synpcc7942_0183 0.72 -0.1 181,357 + Synpcc7942_0183 0.72 -0.1 181,357 + Synpcc7942_0183 0.72 -0.5 181,365 - Synpcc7942_0183 0.74 -1.3 181,381 + Synpcc7942_0183 0.78 -0.5 181,398 - Synpcc7942_0183 0.82 +0.5 181,417 - Synpcc7942_0183 0.87 -0.1 181,428 + Synpcc7942_0183 0.90 -1.1 181,428 + Synpcc7942_0183 0.90 -0.4 181,429 - -0.6 181,477 + +1.1 181,477 + +0.9 181,477 + +0.5 181,487 + -0.4 181,513 + -0.4 181,513 + +0.2 181,513 + +0.2 181,513 + +0.9 181,513 + -0.8 181,513 + -0.3 181,521 - -0.2 181,521 - -0.3 181,521 - -0.6 181,521 - -0.5 181,521 - +0.9 181,521 - +0.2 181,526 + -0.5 181,527 - -0.7 181,529 - -0.9 181,545 - +0.5 181,555 - -0.5 181,557 + +0.1 181,565 - -0.4 181,565 - +1.5 181,589 + pit Synpcc7942_0184 0.11 -0.8 181,590 + pit Synpcc7942_0184 0.12 -1.5 181,597 + pit Synpcc7942_0184 0.12 +0.9 181,598 - pit Synpcc7942_0184 0.12 -1.8 181,605 - pit Synpcc7942_0184 0.13 +0.0 181,709 + pit Synpcc7942_0184 0.22 -1.9 181,709 + pit Synpcc7942_0184 0.22 -0.4 181,709 + pit Synpcc7942_0184 0.22 -0.4 181,717 - pit Synpcc7942_0184 0.23 -0.1 181,719 + pit Synpcc7942_0184 0.23 +0.2 181,722 - pit Synpcc7942_0184 0.24 -0.7 181,725 + pit Synpcc7942_0184 0.24 +0.3 181,726 + pit Synpcc7942_0184 0.24 -0.3 181,732 - pit Synpcc7942_0184 0.25 +1.5 181,733 - +1.7 181,734 - pit Synpcc7942_0184 0.25 -0.3 181,741 - pit Synpcc7942_0184 0.25 -0.2 181,754 + pit Synpcc7942_0184 0.27 -1.0 181,762 - pit Synpcc7942_0184 0.27 +1.5 181,770 + pit Synpcc7942_0184 0.28 -0.4 181,778 - +1.0 181,783 - pit Synpcc7942_0184 0.29 +0.5 181,790 + pit Synpcc7942_0184 0.30 -1.3 181,806 - pit Synpcc7942_0184 0.31 -0.4 181,806 - pit Synpcc7942_0184 0.31 -0.1 181,806 - pit Synpcc7942_0184 0.31 -0.7 181,811 - pit Synpcc7942_0184 0.32 -0.1 181,811 - pit Synpcc7942_0184 0.32 -1.5 181,821 - pit Synpcc7942_0184 0.33 -0.1 181,822 + pit Synpcc7942_0184 0.33 -0.6 181,843 - pit Synpcc7942_0184 0.35 -0.8 181,859 + pit Synpcc7942_0184 0.36 -0.1 181,859 + pit Synpcc7942_0184 0.36 -0.4 181,859 + pit Synpcc7942_0184 0.36 -0.1 181,859 + pit Synpcc7942_0184 0.36 +0.2 181,867 - pit Synpcc7942_0184 0.37 -1.1 181,867 - pit Synpcc7942_0184 0.37 -0.4 181,867 - pit Synpcc7942_0184 0.37 +0.5 181,867 - pit Synpcc7942_0184 0.37 -0.7 181,874 + pit Synpcc7942_0184 0.38 +0.8 181,874 + pit Synpcc7942_0184 0.38 -0.4 181,874 + pit Synpcc7942_0184 0.38 +0.1 181,874 + pit Synpcc7942_0184 0.38 +0.7 181,882 - pit Synpcc7942_0184 0.38 +0.5 181,882 - pit Synpcc7942_0184 0.38 -0.4 181,882 - pit Synpcc7942_0184 0.38 -1.1 181,882 - pit Synpcc7942_0184 0.38 +0.0 181,918 + pit Synpcc7942_0184 0.42 -0.9 181,918 + pit Synpcc7942_0184 0.42 -0.5 181,941 + pit Synpcc7942_0184 0.44 -1.7 181,944 + pit Synpcc7942_0184 0.44 +0.5 181,951 + +0.1 181,951 + pit Synpcc7942_0184 0.45 -1.5 181,956 + pit Synpcc7942_0184 0.45 -0.5 181,961 + pit Synpcc7942_0184 0.46 +0.0 181,961 + pit Synpcc7942_0184 0.46 -0.1 181,961 + pit Synpcc7942_0184 0.46 -0.2 181,961 + pit Synpcc7942_0184 0.46 -1.1 181,969 - pit Synpcc7942_0184 0.46 -1.0 181,969 - pit Synpcc7942_0184 0.46 -0.9 181,969 - pit Synpcc7942_0184 0.46 -0.4 181,969 - pit Synpcc7942_0184 0.46 -1.4 181,969 - pit Synpcc7942_0184 0.46 -0.3 181,981 - pit Synpcc7942_0184 0.47 -0.8 182,004 + pit Synpcc7942_0184 0.49 -0.5 182,004 + pit Synpcc7942_0184 0.49 -0.1 182,004 + pit Synpcc7942_0184 0.49 -0.4 182,013 - pit Synpcc7942_0184 0.50 -0.1 182,016 + pit Synpcc7942_0184 0.51 -0.5 182,037 + pit Synpcc7942_0184 0.52 +0.4 182,042 + pit Synpcc7942_0184 0.53 -0.1 182,045 - pit Synpcc7942_0184 0.53 +0.2 182,050 - pit Synpcc7942_0184 0.54 -0.8 182,055 - pit Synpcc7942_0184 0.54 +0.5 182,060 - pit Synpcc7942_0184 0.55 +0.5 182,064 - pit Synpcc7942_0184 0.55 -0.7 182,088 + pit Synpcc7942_0184 0.57 -1.4 182,089 + pit Synpcc7942_0184 0.57 -0.5 182,109 - pit Synpcc7942_0184 0.59 -0.8 182,120 + pit Synpcc7942_0184 0.60 +1.5 182,122 + pit Synpcc7942_0184 0.60 -0.7 182,135 + pit Synpcc7942_0184 0.61 -2.0 182,154 + pit Synpcc7942_0184 0.63 -1.1 182,154 + pit Synpcc7942_0184 0.63 -0.9 182,154 + pit Synpcc7942_0184 0.63 +0.1 182,162 - pit Synpcc7942_0184 0.64 -0.6 182,168 + pit Synpcc7942_0184 0.64 -0.3 182,168 + -2.1 182,176 - pit Synpcc7942_0184 0.65 -1.3 182,176 - pit Synpcc7942_0184 0.65 +0.5 182,187 - pit Synpcc7942_0184 0.66 -0.3 182,189 + pit Synpcc7942_0184 0.66 +0.5 182,206 + pit Synpcc7942_0184 0.68 -1.8 182,212 + pit Synpcc7942_0184 0.68 +0.9 182,212 + pit Synpcc7942_0184 0.68 +0.2 182,212 + pit Synpcc7942_0184 0.68 -0.8 182,214 - pit Synpcc7942_0184 0.69 +0.3 182,214 - pit Synpcc7942_0184 0.69 +1.2 182,225 + pit Synpcc7942_0184 0.70 -3.7 182,265 - pit Synpcc7942_0184 0.73 -0.6 182,268 + pit Synpcc7942_0184 0.74 -0.8 182,268 + pit Synpcc7942_0184 0.74 +0.2 182,269 + pit Synpcc7942_0184 0.74 -0.8 182,269 + pit Synpcc7942_0184 0.74 -0.9 182,269 + pit Synpcc7942_0184 0.74 -0.3 182,269 + pit Synpcc7942_0184 0.74 -0.1 182,269 + pit Synpcc7942_0184 0.74 -0.0 182,276 - pit Synpcc7942_0184 0.74 -0.4 182,283 - pit Synpcc7942_0184 0.75 -1.0 182,286 + pit Synpcc7942_0184 0.75 +1.1 182,286 + pit Synpcc7942_0184 0.75 -0.6 182,286 + pit Synpcc7942_0184 0.75 +0.0 182,293 - -0.2 182,294 - +1.5 182,313 + pit Synpcc7942_0184 0.78 -0.2 182,321 - pit Synpcc7942_0184 0.78 -1.2 182,321 - pit Synpcc7942_0184 0.78 -0.9 182,326 + pit Synpcc7942_0184 0.79 +1.2 182,336 + pit Synpcc7942_0184 0.80 -1.4 182,336 + pit Synpcc7942_0184 0.80 -0.5 182,346 + pit Synpcc7942_0184 0.81 -1.3 182,373 - pit Synpcc7942_0184 0.83 -0.3 182,442 + pit Synpcc7942_0184 0.90 +0.6 182,442 + pit Synpcc7942_0184 0.90 +0.1 182,445 - pit Synpcc7942_0184 0.90 -1.3
Or see this region's nucleotide sequence