Experiment: KB with Lupeol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_5031 and Psyr_5032 are separated by 167 nucleotides Psyr_5032 and Psyr_5033 are separated by 60 nucleotides
Psyr_5031: Psyr_5031 - 4-hydroxybenzoate octaprenyltransferase, at 5,969,964 to 5,970,854
_5031
Psyr_5032: Psyr_5032 - Response regulator receiver:Transcriptional regulatory protein, C-terminal, at 5,971,022 to 5,971,711
_5032
Psyr_5033: Psyr_5033 - PAS/PAC sensor signal transduction histidine kinase, at 5,971,772 to 5,973,094
_5033
Position (kb) 5971
5972 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5970.884 kb on + strand at 5970.884 kb on + strand at 5970.884 kb on + strand at 5970.884 kb on + strand at 5970.885 kb on - strand at 5970.885 kb on - strand at 5970.885 kb on - strand at 5970.889 kb on - strand at 5970.889 kb on - strand at 5970.937 kb on + strand at 5970.970 kb on - strand at 5970.970 kb on - strand at 5970.982 kb on + strand at 5970.982 kb on + strand at 5970.982 kb on + strand at 5970.982 kb on + strand at 5970.983 kb on - strand at 5970.983 kb on - strand at 5970.983 kb on - strand at 5970.983 kb on - strand at 5971.001 kb on + strand at 5971.001 kb on + strand at 5971.002 kb on - strand at 5971.002 kb on - strand at 5971.002 kb on - strand at 5971.112 kb on - strand, within Psyr_5032 at 5971.112 kb on - strand, within Psyr_5032 at 5971.112 kb on - strand, within Psyr_5032 at 5971.112 kb on - strand, within Psyr_5032 at 5971.328 kb on + strand, within Psyr_5032 at 5971.328 kb on + strand, within Psyr_5032 at 5971.328 kb on + strand, within Psyr_5032 at 5971.328 kb on + strand, within Psyr_5032 at 5971.328 kb on + strand, within Psyr_5032 at 5971.328 kb on + strand, within Psyr_5032 at 5971.329 kb on - strand, within Psyr_5032 at 5971.329 kb on - strand, within Psyr_5032 at 5971.329 kb on - strand, within Psyr_5032 at 5971.329 kb on - strand, within Psyr_5032 at 5971.329 kb on - strand, within Psyr_5032 at 5971.329 kb on - strand, within Psyr_5032 at 5971.544 kb on + strand, within Psyr_5032 at 5971.544 kb on + strand, within Psyr_5032 at 5971.572 kb on + strand, within Psyr_5032 at 5971.573 kb on - strand, within Psyr_5032 at 5971.589 kb on + strand, within Psyr_5032 at 5971.589 kb on + strand, within Psyr_5032 at 5971.589 kb on + strand, within Psyr_5032 at 5971.589 kb on + strand, within Psyr_5032 at 5971.590 kb on - strand, within Psyr_5032 at 5971.590 kb on - strand, within Psyr_5032 at 5971.590 kb on - strand, within Psyr_5032 at 5971.652 kb on + strand at 5971.653 kb on - strand at 5971.763 kb on + strand at 5971.770 kb on - strand at 5971.770 kb on - strand at 5971.770 kb on - strand at 5971.860 kb on - strand at 5971.892 kb on + strand at 5971.892 kb on + strand at 5971.892 kb on + strand at 5971.893 kb on - strand at 5971.893 kb on - strand at 5971.893 kb on - strand at 5971.893 kb on - strand at 5972.009 kb on + strand, within Psyr_5033 at 5972.009 kb on + strand, within Psyr_5033 at 5972.009 kb on + strand, within Psyr_5033 at 5972.009 kb on + strand, within Psyr_5033 at 5972.234 kb on + strand, within Psyr_5033 at 5972.234 kb on + strand, within Psyr_5033 at 5972.234 kb on + strand, within Psyr_5033 at 5972.234 kb on + strand, within Psyr_5033 at 5972.234 kb on + strand, within Psyr_5033 at 5972.234 kb on + strand, within Psyr_5033 at 5972.234 kb on + strand, within Psyr_5033 at 5972.253 kb on - strand, within Psyr_5033 at 5972.253 kb on - strand, within Psyr_5033 at 5972.359 kb on - strand, within Psyr_5033 at 5972.359 kb on - strand, within Psyr_5033 at 5972.450 kb on + strand, within Psyr_5033 at 5972.592 kb on - strand, within Psyr_5033
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Lupeol 10 mM remove 5,970,884 + -0.9 5,970,884 + -0.5 5,970,884 + -0.8 5,970,884 + +0.5 5,970,885 - -1.1 5,970,885 - +1.2 5,970,885 - -1.3 5,970,889 - -0.1 5,970,889 - +0.7 5,970,937 + +0.6 5,970,970 - +0.7 5,970,970 - -0.7 5,970,982 + -0.1 5,970,982 + +0.6 5,970,982 + -0.1 5,970,982 + -1.2 5,970,983 - +0.6 5,970,983 - -1.2 5,970,983 - -1.3 5,970,983 - +0.6 5,971,001 + -0.9 5,971,001 + +1.0 5,971,002 - +1.9 5,971,002 - +1.9 5,971,002 - -0.0 5,971,112 - Psyr_5032 0.13 -0.2 5,971,112 - Psyr_5032 0.13 +0.7 5,971,112 - Psyr_5032 0.13 -0.6 5,971,112 - Psyr_5032 0.13 -0.9 5,971,328 + Psyr_5032 0.44 -0.6 5,971,328 + Psyr_5032 0.44 +0.4 5,971,328 + Psyr_5032 0.44 +1.0 5,971,328 + Psyr_5032 0.44 -1.0 5,971,328 + Psyr_5032 0.44 -2.6 5,971,328 + Psyr_5032 0.44 -0.2 5,971,329 - Psyr_5032 0.44 +0.7 5,971,329 - Psyr_5032 0.44 -1.3 5,971,329 - Psyr_5032 0.44 -0.9 5,971,329 - Psyr_5032 0.44 +0.3 5,971,329 - Psyr_5032 0.44 -2.2 5,971,329 - Psyr_5032 0.44 -0.9 5,971,544 + Psyr_5032 0.76 +0.1 5,971,544 + Psyr_5032 0.76 +2.0 5,971,572 + Psyr_5032 0.80 -0.3 5,971,573 - Psyr_5032 0.80 +0.5 5,971,589 + Psyr_5032 0.82 -1.0 5,971,589 + Psyr_5032 0.82 +1.0 5,971,589 + Psyr_5032 0.82 +0.3 5,971,589 + Psyr_5032 0.82 +1.1 5,971,590 - Psyr_5032 0.82 +0.8 5,971,590 - Psyr_5032 0.82 +1.0 5,971,590 - Psyr_5032 0.82 +1.2 5,971,652 + +1.4 5,971,653 - -1.6 5,971,763 + +0.5 5,971,770 - -0.3 5,971,770 - -0.5 5,971,770 - -0.3 5,971,860 - +0.5 5,971,892 + +0.4 5,971,892 + +0.2 5,971,892 + +0.8 5,971,893 - +1.8 5,971,893 - +1.7 5,971,893 - -0.6 5,971,893 - -0.0 5,972,009 + Psyr_5033 0.18 +3.4 5,972,009 + Psyr_5033 0.18 +1.5 5,972,009 + Psyr_5033 0.18 +1.2 5,972,009 + Psyr_5033 0.18 +0.0 5,972,234 + Psyr_5033 0.35 +2.7 5,972,234 + Psyr_5033 0.35 -0.7 5,972,234 + Psyr_5033 0.35 +3.2 5,972,234 + Psyr_5033 0.35 +0.5 5,972,234 + Psyr_5033 0.35 +1.7 5,972,234 + Psyr_5033 0.35 +0.5 5,972,234 + Psyr_5033 0.35 +2.6 5,972,253 - Psyr_5033 0.36 +0.8 5,972,253 - Psyr_5033 0.36 -0.9 5,972,359 - Psyr_5033 0.44 +0.2 5,972,359 - Psyr_5033 0.44 +1.4 5,972,450 + Psyr_5033 0.51 -0.2 5,972,592 - Psyr_5033 0.62 +0.3
Or see this region's nucleotide sequence