Experiment: KB with Lupeol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4691 and Psyr_4692 are separated by 25 nucleotides Psyr_4692 and Psyr_4693 overlap by 4 nucleotides Psyr_4693 and Psyr_4694 overlap by 4 nucleotides
Psyr_4691: Psyr_4691 - Metallophosphoesterase, at 5,559,895 to 5,560,728
_4691
Psyr_4692: Psyr_4692 - ABC transporter, at 5,560,754 to 5,561,785
_4692
Psyr_4693: Psyr_4693 - Binding-protein-dependent transport systems inner membrane component, at 5,561,782 to 5,562,576
_4693
Psyr_4694: Psyr_4694 - Binding-protein-dependent transport systems inner membrane component, at 5,562,573 to 5,563,442
_4694
Position (kb) 5560
5561
5562 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5559.798 kb on + strand at 5559.799 kb on - strand at 5559.799 kb on - strand at 5559.810 kb on + strand at 5559.811 kb on - strand at 5559.811 kb on - strand at 5559.854 kb on + strand at 5559.855 kb on - strand at 5559.920 kb on + strand at 5559.920 kb on + strand at 5559.920 kb on + strand at 5559.921 kb on - strand at 5559.921 kb on - strand at 5559.921 kb on - strand at 5559.941 kb on + strand at 5559.942 kb on - strand at 5559.942 kb on - strand at 5559.942 kb on - strand at 5559.942 kb on - strand at 5560.005 kb on - strand, within Psyr_4691 at 5560.005 kb on - strand, within Psyr_4691 at 5560.274 kb on + strand, within Psyr_4691 at 5560.274 kb on + strand, within Psyr_4691 at 5560.274 kb on + strand, within Psyr_4691 at 5560.274 kb on + strand, within Psyr_4691 at 5560.274 kb on + strand, within Psyr_4691 at 5560.274 kb on + strand, within Psyr_4691 at 5560.274 kb on + strand, within Psyr_4691 at 5560.274 kb on + strand, within Psyr_4691 at 5560.275 kb on - strand, within Psyr_4691 at 5560.275 kb on - strand, within Psyr_4691 at 5560.275 kb on - strand, within Psyr_4691 at 5560.275 kb on - strand, within Psyr_4691 at 5560.275 kb on - strand, within Psyr_4691 at 5560.275 kb on - strand, within Psyr_4691 at 5560.320 kb on - strand, within Psyr_4691 at 5560.430 kb on + strand, within Psyr_4691 at 5560.430 kb on + strand, within Psyr_4691 at 5560.430 kb on + strand, within Psyr_4691 at 5560.430 kb on + strand, within Psyr_4691 at 5560.431 kb on - strand, within Psyr_4691 at 5560.431 kb on - strand, within Psyr_4691 at 5560.661 kb on + strand at 5560.661 kb on + strand at 5560.661 kb on + strand at 5560.661 kb on + strand at 5560.662 kb on - strand at 5560.662 kb on - strand at 5560.662 kb on - strand at 5560.662 kb on - strand at 5560.662 kb on - strand at 5560.710 kb on + strand at 5560.711 kb on - strand at 5560.731 kb on + strand at 5560.732 kb on - strand at 5560.732 kb on - strand at 5560.732 kb on - strand at 5560.732 kb on - strand at 5560.732 kb on - strand at 5560.769 kb on - strand at 5560.819 kb on - strand at 5560.972 kb on - strand, within Psyr_4692 at 5560.972 kb on - strand, within Psyr_4692 at 5560.986 kb on - strand, within Psyr_4692 at 5561.112 kb on + strand, within Psyr_4692 at 5561.113 kb on - strand, within Psyr_4692 at 5561.113 kb on - strand, within Psyr_4692 at 5561.446 kb on + strand, within Psyr_4692 at 5561.446 kb on + strand, within Psyr_4692 at 5561.491 kb on + strand, within Psyr_4692 at 5561.526 kb on + strand, within Psyr_4692 at 5561.526 kb on + strand, within Psyr_4692 at 5561.526 kb on + strand, within Psyr_4692 at 5561.527 kb on - strand, within Psyr_4692 at 5561.527 kb on - strand, within Psyr_4692 at 5561.527 kb on - strand, within Psyr_4692 at 5561.720 kb on + strand at 5561.720 kb on + strand at 5561.721 kb on - strand at 5561.870 kb on + strand, within Psyr_4693 at 5561.870 kb on + strand, within Psyr_4693 at 5561.870 kb on + strand, within Psyr_4693 at 5561.903 kb on + strand, within Psyr_4693 at 5561.903 kb on + strand, within Psyr_4693 at 5561.903 kb on + strand, within Psyr_4693 at 5561.903 kb on + strand, within Psyr_4693 at 5562.030 kb on + strand, within Psyr_4693 at 5562.030 kb on + strand, within Psyr_4693 at 5562.030 kb on + strand, within Psyr_4693 at 5562.031 kb on - strand, within Psyr_4693 at 5562.218 kb on + strand, within Psyr_4693 at 5562.326 kb on + strand, within Psyr_4693 at 5562.408 kb on - strand, within Psyr_4693 at 5562.468 kb on - strand, within Psyr_4693 at 5562.593 kb on + strand at 5562.602 kb on + strand at 5562.602 kb on + strand at 5562.603 kb on - strand at 5562.682 kb on + strand, within Psyr_4694 at 5562.700 kb on + strand, within Psyr_4694 at 5562.701 kb on - strand, within Psyr_4694 at 5562.701 kb on - strand, within Psyr_4694 at 5562.701 kb on - strand, within Psyr_4694 at 5562.701 kb on - strand, within Psyr_4694 at 5562.701 kb on - strand, within Psyr_4694 at 5562.701 kb on - strand, within Psyr_4694
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Lupeol 10 mM remove 5,559,798 + -0.6 5,559,799 - -1.7 5,559,799 - -0.5 5,559,810 + +0.6 5,559,811 - -0.7 5,559,811 - -0.6 5,559,854 + -0.1 5,559,855 - -0.4 5,559,920 + -0.5 5,559,920 + -0.1 5,559,920 + +0.2 5,559,921 - -0.2 5,559,921 - -3.5 5,559,921 - +1.3 5,559,941 + -1.7 5,559,942 - -0.2 5,559,942 - +0.6 5,559,942 - +0.1 5,559,942 - -0.9 5,560,005 - Psyr_4691 0.13 -1.9 5,560,005 - Psyr_4691 0.13 +2.8 5,560,274 + Psyr_4691 0.45 -3.2 5,560,274 + Psyr_4691 0.45 +1.0 5,560,274 + Psyr_4691 0.45 -0.4 5,560,274 + Psyr_4691 0.45 +1.5 5,560,274 + Psyr_4691 0.45 +0.4 5,560,274 + Psyr_4691 0.45 +0.5 5,560,274 + Psyr_4691 0.45 +2.7 5,560,274 + Psyr_4691 0.45 -0.3 5,560,275 - Psyr_4691 0.46 +0.9 5,560,275 - Psyr_4691 0.46 -0.9 5,560,275 - Psyr_4691 0.46 -2.9 5,560,275 - Psyr_4691 0.46 +1.0 5,560,275 - Psyr_4691 0.46 +2.5 5,560,275 - Psyr_4691 0.46 +0.7 5,560,320 - Psyr_4691 0.51 +0.4 5,560,430 + Psyr_4691 0.64 +1.7 5,560,430 + Psyr_4691 0.64 -1.2 5,560,430 + Psyr_4691 0.64 -0.2 5,560,430 + Psyr_4691 0.64 +0.4 5,560,431 - Psyr_4691 0.64 +0.4 5,560,431 - Psyr_4691 0.64 +0.7 5,560,661 + +0.8 5,560,661 + -1.0 5,560,661 + -0.3 5,560,661 + -0.1 5,560,662 - -0.2 5,560,662 - +2.8 5,560,662 - -0.1 5,560,662 - -0.1 5,560,662 - +0.4 5,560,710 + +0.0 5,560,711 - -0.4 5,560,731 + -2.5 5,560,732 - -0.6 5,560,732 - +0.1 5,560,732 - -0.6 5,560,732 - -0.7 5,560,732 - -0.6 5,560,769 - -0.5 5,560,819 - -0.5 5,560,972 - Psyr_4692 0.21 -0.2 5,560,972 - Psyr_4692 0.21 +1.0 5,560,986 - Psyr_4692 0.22 -0.0 5,561,112 + Psyr_4692 0.35 -0.5 5,561,113 - Psyr_4692 0.35 +1.6 5,561,113 - Psyr_4692 0.35 +1.3 5,561,446 + Psyr_4692 0.67 -0.6 5,561,446 + Psyr_4692 0.67 +1.8 5,561,491 + Psyr_4692 0.71 +0.5 5,561,526 + Psyr_4692 0.75 -0.4 5,561,526 + Psyr_4692 0.75 -0.5 5,561,526 + Psyr_4692 0.75 +1.5 5,561,527 - Psyr_4692 0.75 -0.8 5,561,527 - Psyr_4692 0.75 +0.6 5,561,527 - Psyr_4692 0.75 -0.4 5,561,720 + -0.5 5,561,720 + +0.0 5,561,721 - -0.4 5,561,870 + Psyr_4693 0.11 +0.2 5,561,870 + Psyr_4693 0.11 +0.2 5,561,870 + Psyr_4693 0.11 +0.2 5,561,903 + Psyr_4693 0.15 -2.4 5,561,903 + Psyr_4693 0.15 +2.8 5,561,903 + Psyr_4693 0.15 -0.7 5,561,903 + Psyr_4693 0.15 +1.1 5,562,030 + Psyr_4693 0.31 -0.1 5,562,030 + Psyr_4693 0.31 +1.3 5,562,030 + Psyr_4693 0.31 -0.8 5,562,031 - Psyr_4693 0.31 -1.5 5,562,218 + Psyr_4693 0.55 +0.4 5,562,326 + Psyr_4693 0.68 -0.1 5,562,408 - Psyr_4693 0.79 +1.1 5,562,468 - Psyr_4693 0.86 +0.5 5,562,593 + -0.0 5,562,602 + +1.6 5,562,602 + +0.3 5,562,603 - -0.8 5,562,682 + Psyr_4694 0.13 -0.6 5,562,700 + Psyr_4694 0.15 +0.6 5,562,701 - Psyr_4694 0.15 +2.0 5,562,701 - Psyr_4694 0.15 -0.5 5,562,701 - Psyr_4694 0.15 +0.5 5,562,701 - Psyr_4694 0.15 -0.0 5,562,701 - Psyr_4694 0.15 -0.0 5,562,701 - Psyr_4694 0.15 +0.3
Or see this region's nucleotide sequence