Experiment: KB with Lupeol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4690 and Psyr_4691 are separated by 268 nucleotides Psyr_4691 and Psyr_4692 are separated by 25 nucleotides
Psyr_4690: Psyr_4690 - Twin-arginine translocation pathway signal, at 5,557,707 to 5,559,626
_4690
Psyr_4691: Psyr_4691 - Metallophosphoesterase, at 5,559,895 to 5,560,728
_4691
Psyr_4692: Psyr_4692 - ABC transporter, at 5,560,754 to 5,561,785
_4692
Position (kb) 5559
5560
5561 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5559.060 kb on + strand, within Psyr_4690 at 5559.060 kb on + strand, within Psyr_4690 at 5559.060 kb on + strand, within Psyr_4690 at 5559.060 kb on + strand, within Psyr_4690 at 5559.060 kb on + strand, within Psyr_4690 at 5559.060 kb on + strand, within Psyr_4690 at 5559.060 kb on + strand, within Psyr_4690 at 5559.061 kb on - strand, within Psyr_4690 at 5559.061 kb on - strand, within Psyr_4690 at 5559.142 kb on - strand, within Psyr_4690 at 5559.540 kb on - strand at 5559.663 kb on + strand at 5559.663 kb on + strand at 5559.664 kb on - strand at 5559.665 kb on + strand at 5559.665 kb on + strand at 5559.665 kb on + strand at 5559.665 kb on + strand at 5559.665 kb on + strand at 5559.665 kb on + strand at 5559.665 kb on + strand at 5559.665 kb on + strand at 5559.665 kb on + strand at 5559.665 kb on + strand at 5559.666 kb on - strand at 5559.666 kb on - strand at 5559.666 kb on - strand at 5559.666 kb on - strand at 5559.666 kb on - strand at 5559.666 kb on - strand at 5559.666 kb on - strand at 5559.666 kb on - strand at 5559.666 kb on - strand at 5559.666 kb on - strand at 5559.666 kb on - strand at 5559.666 kb on - strand at 5559.666 kb on - strand at 5559.667 kb on + strand at 5559.667 kb on + strand at 5559.667 kb on + strand at 5559.667 kb on + strand at 5559.667 kb on + strand at 5559.667 kb on + strand at 5559.667 kb on + strand at 5559.667 kb on + strand at 5559.667 kb on + strand at 5559.667 kb on + strand at 5559.668 kb on - strand at 5559.668 kb on - strand at 5559.668 kb on - strand at 5559.668 kb on - strand at 5559.668 kb on - strand at 5559.668 kb on - strand at 5559.668 kb on - strand at 5559.668 kb on - strand at 5559.668 kb on - strand at 5559.668 kb on - strand at 5559.678 kb on + strand at 5559.730 kb on + strand at 5559.730 kb on + strand at 5559.730 kb on + strand at 5559.730 kb on + strand at 5559.730 kb on + strand at 5559.731 kb on - strand at 5559.731 kb on - strand at 5559.731 kb on - strand at 5559.731 kb on - strand at 5559.731 kb on - strand at 5559.731 kb on - strand at 5559.798 kb on + strand at 5559.799 kb on - strand at 5559.799 kb on - strand at 5559.810 kb on + strand at 5559.811 kb on - strand at 5559.811 kb on - strand at 5559.854 kb on + strand at 5559.855 kb on - strand at 5559.920 kb on + strand at 5559.920 kb on + strand at 5559.920 kb on + strand at 5559.921 kb on - strand at 5559.921 kb on - strand at 5559.921 kb on - strand at 5559.941 kb on + strand at 5559.942 kb on - strand at 5559.942 kb on - strand at 5559.942 kb on - strand at 5559.942 kb on - strand at 5560.005 kb on - strand, within Psyr_4691 at 5560.005 kb on - strand, within Psyr_4691 at 5560.274 kb on + strand, within Psyr_4691 at 5560.274 kb on + strand, within Psyr_4691 at 5560.274 kb on + strand, within Psyr_4691 at 5560.274 kb on + strand, within Psyr_4691 at 5560.274 kb on + strand, within Psyr_4691 at 5560.274 kb on + strand, within Psyr_4691 at 5560.274 kb on + strand, within Psyr_4691 at 5560.274 kb on + strand, within Psyr_4691 at 5560.275 kb on - strand, within Psyr_4691 at 5560.275 kb on - strand, within Psyr_4691 at 5560.275 kb on - strand, within Psyr_4691 at 5560.275 kb on - strand, within Psyr_4691 at 5560.275 kb on - strand, within Psyr_4691 at 5560.275 kb on - strand, within Psyr_4691 at 5560.320 kb on - strand, within Psyr_4691 at 5560.430 kb on + strand, within Psyr_4691 at 5560.430 kb on + strand, within Psyr_4691 at 5560.430 kb on + strand, within Psyr_4691 at 5560.430 kb on + strand, within Psyr_4691 at 5560.431 kb on - strand, within Psyr_4691 at 5560.431 kb on - strand, within Psyr_4691 at 5560.661 kb on + strand at 5560.661 kb on + strand at 5560.661 kb on + strand at 5560.661 kb on + strand at 5560.662 kb on - strand at 5560.662 kb on - strand at 5560.662 kb on - strand at 5560.662 kb on - strand at 5560.662 kb on - strand at 5560.710 kb on + strand at 5560.711 kb on - strand at 5560.731 kb on + strand at 5560.732 kb on - strand at 5560.732 kb on - strand at 5560.732 kb on - strand at 5560.732 kb on - strand at 5560.732 kb on - strand at 5560.769 kb on - strand at 5560.819 kb on - strand at 5560.972 kb on - strand, within Psyr_4692 at 5560.972 kb on - strand, within Psyr_4692 at 5560.986 kb on - strand, within Psyr_4692 at 5561.112 kb on + strand, within Psyr_4692 at 5561.113 kb on - strand, within Psyr_4692 at 5561.113 kb on - strand, within Psyr_4692 at 5561.446 kb on + strand, within Psyr_4692 at 5561.446 kb on + strand, within Psyr_4692 at 5561.491 kb on + strand, within Psyr_4692 at 5561.526 kb on + strand, within Psyr_4692 at 5561.526 kb on + strand, within Psyr_4692 at 5561.526 kb on + strand, within Psyr_4692 at 5561.527 kb on - strand, within Psyr_4692 at 5561.527 kb on - strand, within Psyr_4692 at 5561.527 kb on - strand, within Psyr_4692 at 5561.720 kb on + strand at 5561.720 kb on + strand at 5561.721 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Lupeol 10 mM remove 5,559,060 + Psyr_4690 0.70 -2.1 5,559,060 + Psyr_4690 0.70 -0.1 5,559,060 + Psyr_4690 0.70 -0.9 5,559,060 + Psyr_4690 0.70 +0.4 5,559,060 + Psyr_4690 0.70 -0.6 5,559,060 + Psyr_4690 0.70 -0.2 5,559,060 + Psyr_4690 0.70 +1.3 5,559,061 - Psyr_4690 0.71 -0.3 5,559,061 - Psyr_4690 0.71 -0.5 5,559,142 - Psyr_4690 0.75 +0.6 5,559,540 - +0.0 5,559,663 + -0.1 5,559,663 + +2.8 5,559,664 - +1.4 5,559,665 + +0.2 5,559,665 + +0.1 5,559,665 + -1.3 5,559,665 + -0.3 5,559,665 + -0.5 5,559,665 + -0.1 5,559,665 + -1.2 5,559,665 + +0.0 5,559,665 + -0.4 5,559,665 + -0.1 5,559,666 - -0.2 5,559,666 - -0.7 5,559,666 - -1.2 5,559,666 - -0.3 5,559,666 - +0.6 5,559,666 - -0.3 5,559,666 - +0.8 5,559,666 - +1.0 5,559,666 - +0.6 5,559,666 - -0.7 5,559,666 - -1.1 5,559,666 - +1.7 5,559,666 - -0.7 5,559,667 + +1.3 5,559,667 + +0.4 5,559,667 + -1.5 5,559,667 + -1.0 5,559,667 + -1.6 5,559,667 + -1.3 5,559,667 + +0.2 5,559,667 + +0.8 5,559,667 + -0.2 5,559,667 + -0.5 5,559,668 - +0.3 5,559,668 - +0.6 5,559,668 - -0.5 5,559,668 - -1.2 5,559,668 - +0.5 5,559,668 - +0.1 5,559,668 - +0.7 5,559,668 - -0.2 5,559,668 - -0.5 5,559,668 - -2.5 5,559,678 + -1.4 5,559,730 + +0.4 5,559,730 + +0.4 5,559,730 + +2.1 5,559,730 + -0.4 5,559,730 + +0.3 5,559,731 - +0.4 5,559,731 - -0.6 5,559,731 - -0.7 5,559,731 - +0.1 5,559,731 - -0.6 5,559,731 - -1.1 5,559,798 + -0.6 5,559,799 - -1.7 5,559,799 - -0.5 5,559,810 + +0.6 5,559,811 - -0.7 5,559,811 - -0.6 5,559,854 + -0.1 5,559,855 - -0.4 5,559,920 + -0.5 5,559,920 + -0.1 5,559,920 + +0.2 5,559,921 - -0.2 5,559,921 - -3.5 5,559,921 - +1.3 5,559,941 + -1.7 5,559,942 - -0.2 5,559,942 - +0.6 5,559,942 - +0.1 5,559,942 - -0.9 5,560,005 - Psyr_4691 0.13 -1.9 5,560,005 - Psyr_4691 0.13 +2.8 5,560,274 + Psyr_4691 0.45 -3.2 5,560,274 + Psyr_4691 0.45 +1.0 5,560,274 + Psyr_4691 0.45 -0.4 5,560,274 + Psyr_4691 0.45 +1.5 5,560,274 + Psyr_4691 0.45 +0.4 5,560,274 + Psyr_4691 0.45 +0.5 5,560,274 + Psyr_4691 0.45 +2.7 5,560,274 + Psyr_4691 0.45 -0.3 5,560,275 - Psyr_4691 0.46 +0.9 5,560,275 - Psyr_4691 0.46 -0.9 5,560,275 - Psyr_4691 0.46 -2.9 5,560,275 - Psyr_4691 0.46 +1.0 5,560,275 - Psyr_4691 0.46 +2.5 5,560,275 - Psyr_4691 0.46 +0.7 5,560,320 - Psyr_4691 0.51 +0.4 5,560,430 + Psyr_4691 0.64 +1.7 5,560,430 + Psyr_4691 0.64 -1.2 5,560,430 + Psyr_4691 0.64 -0.2 5,560,430 + Psyr_4691 0.64 +0.4 5,560,431 - Psyr_4691 0.64 +0.4 5,560,431 - Psyr_4691 0.64 +0.7 5,560,661 + +0.8 5,560,661 + -1.0 5,560,661 + -0.3 5,560,661 + -0.1 5,560,662 - -0.2 5,560,662 - +2.8 5,560,662 - -0.1 5,560,662 - -0.1 5,560,662 - +0.4 5,560,710 + +0.0 5,560,711 - -0.4 5,560,731 + -2.5 5,560,732 - -0.6 5,560,732 - +0.1 5,560,732 - -0.6 5,560,732 - -0.7 5,560,732 - -0.6 5,560,769 - -0.5 5,560,819 - -0.5 5,560,972 - Psyr_4692 0.21 -0.2 5,560,972 - Psyr_4692 0.21 +1.0 5,560,986 - Psyr_4692 0.22 -0.0 5,561,112 + Psyr_4692 0.35 -0.5 5,561,113 - Psyr_4692 0.35 +1.6 5,561,113 - Psyr_4692 0.35 +1.3 5,561,446 + Psyr_4692 0.67 -0.6 5,561,446 + Psyr_4692 0.67 +1.8 5,561,491 + Psyr_4692 0.71 +0.5 5,561,526 + Psyr_4692 0.75 -0.4 5,561,526 + Psyr_4692 0.75 -0.5 5,561,526 + Psyr_4692 0.75 +1.5 5,561,527 - Psyr_4692 0.75 -0.8 5,561,527 - Psyr_4692 0.75 +0.6 5,561,527 - Psyr_4692 0.75 -0.4 5,561,720 + -0.5 5,561,720 + +0.0 5,561,721 - -0.4
Or see this region's nucleotide sequence