Experiment: KB with Lupeol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4267 and Psyr_4268 are separated by 47 nucleotides Psyr_4268 and Psyr_4269 are separated by 69 nucleotides
Psyr_4267: Psyr_4267 - conserved hypothetical protein, at 5,088,571 to 5,089,464
_4267
Psyr_4268: Psyr_4268 - Amidase, at 5,089,512 to 5,090,963
_4268
Psyr_4269: Psyr_4269 - type III effector HopAE1, at 5,091,033 to 5,093,777
_4269
Position (kb) 5089
5090
5091 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5088.512 kb on + strand at 5088.512 kb on + strand at 5088.513 kb on - strand at 5088.525 kb on - strand at 5088.537 kb on - strand at 5088.537 kb on - strand at 5088.712 kb on + strand, within Psyr_4267 at 5088.712 kb on + strand, within Psyr_4267 at 5088.712 kb on + strand, within Psyr_4267 at 5088.797 kb on - strand, within Psyr_4267 at 5089.010 kb on + strand, within Psyr_4267 at 5089.010 kb on + strand, within Psyr_4267 at 5089.010 kb on + strand, within Psyr_4267 at 5089.010 kb on + strand, within Psyr_4267 at 5089.011 kb on - strand, within Psyr_4267 at 5089.011 kb on - strand, within Psyr_4267 at 5089.105 kb on + strand, within Psyr_4267 at 5089.105 kb on + strand, within Psyr_4267 at 5089.105 kb on + strand, within Psyr_4267 at 5089.105 kb on + strand, within Psyr_4267 at 5089.105 kb on + strand, within Psyr_4267 at 5089.105 kb on + strand, within Psyr_4267 at 5089.106 kb on - strand, within Psyr_4267 at 5089.106 kb on - strand, within Psyr_4267 at 5089.106 kb on - strand, within Psyr_4267 at 5089.153 kb on - strand, within Psyr_4267 at 5089.154 kb on + strand, within Psyr_4267 at 5089.155 kb on - strand, within Psyr_4267 at 5089.155 kb on - strand, within Psyr_4267 at 5089.155 kb on - strand, within Psyr_4267 at 5089.155 kb on - strand, within Psyr_4267 at 5089.155 kb on - strand, within Psyr_4267 at 5089.198 kb on + strand, within Psyr_4267 at 5089.261 kb on + strand, within Psyr_4267 at 5089.261 kb on + strand, within Psyr_4267 at 5089.261 kb on + strand, within Psyr_4267 at 5089.262 kb on - strand, within Psyr_4267 at 5089.262 kb on - strand, within Psyr_4267 at 5089.262 kb on - strand, within Psyr_4267 at 5089.262 kb on - strand, within Psyr_4267 at 5089.262 kb on - strand, within Psyr_4267 at 5089.348 kb on + strand, within Psyr_4267 at 5089.348 kb on + strand, within Psyr_4267 at 5089.348 kb on + strand, within Psyr_4267 at 5089.349 kb on - strand, within Psyr_4267 at 5089.349 kb on - strand, within Psyr_4267 at 5089.393 kb on + strand at 5089.394 kb on - strand at 5089.394 kb on - strand at 5089.429 kb on + strand at 5089.430 kb on - strand at 5089.430 kb on - strand at 5089.462 kb on + strand at 5089.462 kb on + strand at 5089.462 kb on + strand at 5089.462 kb on + strand at 5089.463 kb on - strand at 5089.463 kb on - strand at 5089.531 kb on + strand at 5089.538 kb on + strand at 5089.669 kb on - strand, within Psyr_4268 at 5089.902 kb on + strand, within Psyr_4268 at 5089.902 kb on + strand, within Psyr_4268 at 5089.903 kb on - strand, within Psyr_4268 at 5090.315 kb on - strand, within Psyr_4268 at 5090.391 kb on + strand, within Psyr_4268 at 5090.391 kb on + strand, within Psyr_4268 at 5090.391 kb on + strand, within Psyr_4268 at 5090.391 kb on + strand, within Psyr_4268 at 5090.391 kb on + strand, within Psyr_4268 at 5090.392 kb on - strand, within Psyr_4268 at 5090.392 kb on - strand, within Psyr_4268 at 5090.392 kb on - strand, within Psyr_4268 at 5090.475 kb on + strand, within Psyr_4268 at 5090.583 kb on + strand, within Psyr_4268 at 5090.584 kb on - strand, within Psyr_4268 at 5090.584 kb on - strand, within Psyr_4268 at 5090.584 kb on - strand, within Psyr_4268 at 5090.646 kb on + strand, within Psyr_4268 at 5090.817 kb on + strand, within Psyr_4268 at 5091.034 kb on + strand at 5091.035 kb on - strand at 5091.035 kb on - strand at 5091.100 kb on + strand at 5091.101 kb on - strand at 5091.193 kb on + strand at 5091.194 kb on - strand at 5091.194 kb on - strand at 5091.259 kb on + strand at 5091.507 kb on + strand, within Psyr_4269 at 5091.619 kb on + strand, within Psyr_4269 at 5091.619 kb on + strand, within Psyr_4269 at 5091.619 kb on + strand, within Psyr_4269 at 5091.620 kb on - strand, within Psyr_4269 at 5091.727 kb on + strand, within Psyr_4269 at 5091.727 kb on + strand, within Psyr_4269 at 5091.727 kb on + strand, within Psyr_4269 at 5091.728 kb on - strand, within Psyr_4269 at 5091.775 kb on + strand, within Psyr_4269 at 5091.775 kb on + strand, within Psyr_4269 at 5091.776 kb on - strand, within Psyr_4269 at 5091.776 kb on - strand, within Psyr_4269 at 5091.943 kb on - strand, within Psyr_4269
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Lupeol 10 mM remove 5,088,512 + -0.4 5,088,512 + -2.1 5,088,513 - -1.2 5,088,525 - +1.5 5,088,537 - +0.9 5,088,537 - -0.4 5,088,712 + Psyr_4267 0.16 +0.0 5,088,712 + Psyr_4267 0.16 -0.2 5,088,712 + Psyr_4267 0.16 -0.1 5,088,797 - Psyr_4267 0.25 +1.0 5,089,010 + Psyr_4267 0.49 +1.0 5,089,010 + Psyr_4267 0.49 +0.5 5,089,010 + Psyr_4267 0.49 +3.5 5,089,010 + Psyr_4267 0.49 +2.8 5,089,011 - Psyr_4267 0.49 -0.9 5,089,011 - Psyr_4267 0.49 -0.2 5,089,105 + Psyr_4267 0.60 +0.0 5,089,105 + Psyr_4267 0.60 +0.3 5,089,105 + Psyr_4267 0.60 +3.1 5,089,105 + Psyr_4267 0.60 -0.6 5,089,105 + Psyr_4267 0.60 +0.1 5,089,105 + Psyr_4267 0.60 -0.8 5,089,106 - Psyr_4267 0.60 +0.4 5,089,106 - Psyr_4267 0.60 +0.4 5,089,106 - Psyr_4267 0.60 -0.3 5,089,153 - Psyr_4267 0.65 +0.3 5,089,154 + Psyr_4267 0.65 +1.6 5,089,155 - Psyr_4267 0.65 +0.7 5,089,155 - Psyr_4267 0.65 -0.3 5,089,155 - Psyr_4267 0.65 +0.5 5,089,155 - Psyr_4267 0.65 -0.8 5,089,155 - Psyr_4267 0.65 -3.1 5,089,198 + Psyr_4267 0.70 +0.3 5,089,261 + Psyr_4267 0.77 +0.7 5,089,261 + Psyr_4267 0.77 +0.8 5,089,261 + Psyr_4267 0.77 -0.3 5,089,262 - Psyr_4267 0.77 +0.2 5,089,262 - Psyr_4267 0.77 +0.8 5,089,262 - Psyr_4267 0.77 +1.4 5,089,262 - Psyr_4267 0.77 +1.7 5,089,262 - Psyr_4267 0.77 -0.7 5,089,348 + Psyr_4267 0.87 +0.3 5,089,348 + Psyr_4267 0.87 -1.6 5,089,348 + Psyr_4267 0.87 -1.7 5,089,349 - Psyr_4267 0.87 +1.5 5,089,349 - Psyr_4267 0.87 -0.2 5,089,393 + +1.3 5,089,394 - +3.1 5,089,394 - -0.4 5,089,429 + +0.6 5,089,430 - -0.3 5,089,430 - +1.3 5,089,462 + +3.3 5,089,462 + +1.0 5,089,462 + -1.0 5,089,462 + -1.0 5,089,463 - +1.0 5,089,463 - -0.4 5,089,531 + -0.7 5,089,538 + +0.6 5,089,669 - Psyr_4268 0.11 +0.4 5,089,902 + Psyr_4268 0.27 +0.7 5,089,902 + Psyr_4268 0.27 -1.9 5,089,903 - Psyr_4268 0.27 +1.1 5,090,315 - Psyr_4268 0.55 -0.5 5,090,391 + Psyr_4268 0.61 +0.7 5,090,391 + Psyr_4268 0.61 +3.0 5,090,391 + Psyr_4268 0.61 +0.3 5,090,391 + Psyr_4268 0.61 -0.6 5,090,391 + Psyr_4268 0.61 -1.2 5,090,392 - Psyr_4268 0.61 +0.6 5,090,392 - Psyr_4268 0.61 +1.1 5,090,392 - Psyr_4268 0.61 +3.5 5,090,475 + Psyr_4268 0.66 -0.5 5,090,583 + Psyr_4268 0.74 -0.7 5,090,584 - Psyr_4268 0.74 +0.3 5,090,584 - Psyr_4268 0.74 +2.1 5,090,584 - Psyr_4268 0.74 -1.2 5,090,646 + Psyr_4268 0.78 +0.8 5,090,817 + Psyr_4268 0.90 +0.7 5,091,034 + +0.4 5,091,035 - -1.5 5,091,035 - -0.7 5,091,100 + +0.1 5,091,101 - -0.1 5,091,193 + -0.2 5,091,194 - -0.8 5,091,194 - +1.1 5,091,259 + +0.1 5,091,507 + Psyr_4269 0.17 -0.3 5,091,619 + Psyr_4269 0.21 -1.1 5,091,619 + Psyr_4269 0.21 +0.4 5,091,619 + Psyr_4269 0.21 -0.6 5,091,620 - Psyr_4269 0.21 -0.0 5,091,727 + Psyr_4269 0.25 +0.1 5,091,727 + Psyr_4269 0.25 +1.0 5,091,727 + Psyr_4269 0.25 +0.1 5,091,728 - Psyr_4269 0.25 -1.3 5,091,775 + Psyr_4269 0.27 +0.1 5,091,775 + Psyr_4269 0.27 +1.3 5,091,776 - Psyr_4269 0.27 +1.8 5,091,776 - Psyr_4269 0.27 -1.1 5,091,943 - Psyr_4269 0.33 -0.2
Or see this region's nucleotide sequence