Experiment: KB with Lupeol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4166 and Psyr_4167 are separated by 309 nucleotides Psyr_4167 and Psyr_4168 are separated by 78 nucleotides Psyr_4168 and Psyr_4169 are separated by 32 nucleotides Psyr_4169 and Psyr_4170 overlap by 4 nucleotides
Psyr_4166: Psyr_4166 - aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, at 4,955,603 to 4,957,048
_4166
Psyr_4167: Psyr_4167 - Rare lipoprotein A, at 4,957,358 to 4,957,795
_4167
Psyr_4168: Psyr_4168 - K+-dependent Na+/Ca+ exchanger related-protein, at 4,957,874 to 4,958,905
_4168
Psyr_4169: Psyr_4169 - 4-carboxymuconolactone decarboxylase, at 4,958,938 to 4,959,321
_4169
Psyr_4170: Psyr_4170 - Auxin Efflux Carrier, at 4,959,318 to 4,960,268
_4170
Position (kb) 4957
4958
4959 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4957.088 kb on - strand at 4957.088 kb on - strand at 4957.089 kb on + strand at 4957.089 kb on + strand at 4957.089 kb on + strand at 4957.089 kb on + strand at 4957.089 kb on + strand at 4957.089 kb on + strand at 4957.090 kb on - strand at 4957.090 kb on - strand at 4957.090 kb on - strand at 4957.090 kb on - strand at 4957.142 kb on - strand at 4957.257 kb on + strand at 4957.257 kb on + strand at 4957.257 kb on + strand at 4957.257 kb on + strand at 4957.258 kb on - strand at 4957.258 kb on - strand at 4957.258 kb on - strand at 4957.258 kb on - strand at 4957.258 kb on - strand at 4957.259 kb on + strand at 4957.401 kb on + strand at 4957.401 kb on + strand at 4957.401 kb on + strand at 4957.402 kb on - strand, within Psyr_4167 at 4957.402 kb on - strand, within Psyr_4167 at 4957.439 kb on - strand, within Psyr_4167 at 4957.465 kb on - strand, within Psyr_4167 at 4957.505 kb on + strand, within Psyr_4167 at 4957.529 kb on + strand, within Psyr_4167 at 4957.530 kb on - strand, within Psyr_4167 at 4957.532 kb on + strand, within Psyr_4167 at 4957.831 kb on + strand at 4957.831 kb on + strand at 4957.832 kb on - strand at 4957.890 kb on + strand at 4957.890 kb on + strand at 4957.891 kb on - strand at 4957.891 kb on - strand at 4958.019 kb on + strand, within Psyr_4168 at 4958.020 kb on - strand, within Psyr_4168 at 4958.020 kb on - strand, within Psyr_4168 at 4958.094 kb on + strand, within Psyr_4168 at 4958.094 kb on + strand, within Psyr_4168 at 4958.095 kb on - strand, within Psyr_4168 at 4958.095 kb on - strand, within Psyr_4168 at 4958.095 kb on - strand, within Psyr_4168 at 4958.095 kb on - strand, within Psyr_4168 at 4958.095 kb on - strand, within Psyr_4168 at 4958.095 kb on - strand, within Psyr_4168 at 4958.095 kb on - strand, within Psyr_4168 at 4958.341 kb on + strand, within Psyr_4168 at 4958.353 kb on + strand, within Psyr_4168 at 4958.467 kb on + strand, within Psyr_4168 at 4958.705 kb on + strand, within Psyr_4168 at 4958.706 kb on - strand, within Psyr_4168 at 4958.706 kb on - strand, within Psyr_4168 at 4958.757 kb on - strand, within Psyr_4168 at 4958.766 kb on - strand, within Psyr_4168 at 4958.766 kb on - strand, within Psyr_4168 at 4958.766 kb on - strand, within Psyr_4168 at 4958.844 kb on + strand at 4958.922 kb on + strand at 4958.923 kb on - strand at 4958.923 kb on - strand at 4958.998 kb on + strand, within Psyr_4169 at 4958.998 kb on + strand, within Psyr_4169 at 4958.998 kb on + strand, within Psyr_4169 at 4958.999 kb on - strand, within Psyr_4169 at 4958.999 kb on - strand, within Psyr_4169 at 4959.304 kb on + strand at 4959.304 kb on + strand at 4959.304 kb on + strand at 4959.304 kb on + strand at 4959.304 kb on + strand at 4959.304 kb on + strand at 4959.304 kb on + strand at 4959.305 kb on - strand at 4959.305 kb on - strand at 4959.319 kb on + strand at 4959.319 kb on + strand at 4959.319 kb on + strand at 4959.319 kb on + strand at 4959.319 kb on + strand at 4959.320 kb on - strand at 4959.320 kb on - strand at 4959.320 kb on - strand at 4959.320 kb on - strand at 4959.415 kb on + strand, within Psyr_4170 at 4959.416 kb on - strand, within Psyr_4170 at 4959.416 kb on - strand, within Psyr_4170 at 4959.416 kb on - strand, within Psyr_4170 at 4959.445 kb on + strand, within Psyr_4170 at 4959.445 kb on + strand, within Psyr_4170 at 4959.445 kb on + strand, within Psyr_4170 at 4959.445 kb on + strand, within Psyr_4170 at 4959.445 kb on + strand, within Psyr_4170 at 4959.445 kb on + strand, within Psyr_4170 at 4959.445 kb on + strand, within Psyr_4170 at 4959.445 kb on + strand, within Psyr_4170 at 4959.445 kb on + strand, within Psyr_4170 at 4959.446 kb on - strand, within Psyr_4170 at 4959.446 kb on - strand, within Psyr_4170 at 4959.446 kb on - strand, within Psyr_4170 at 4959.446 kb on - strand, within Psyr_4170 at 4959.446 kb on - strand, within Psyr_4170 at 4959.446 kb on - strand, within Psyr_4170 at 4959.446 kb on - strand, within Psyr_4170 at 4959.476 kb on - strand, within Psyr_4170 at 4959.476 kb on - strand, within Psyr_4170 at 4959.476 kb on - strand, within Psyr_4170 at 4959.667 kb on + strand, within Psyr_4170 at 4959.667 kb on + strand, within Psyr_4170 at 4959.667 kb on + strand, within Psyr_4170 at 4959.667 kb on + strand, within Psyr_4170 at 4959.667 kb on + strand, within Psyr_4170 at 4959.667 kb on + strand, within Psyr_4170 at 4959.667 kb on + strand, within Psyr_4170 at 4959.667 kb on + strand, within Psyr_4170 at 4959.668 kb on - strand, within Psyr_4170 at 4959.668 kb on - strand, within Psyr_4170 at 4959.668 kb on - strand, within Psyr_4170 at 4959.668 kb on - strand, within Psyr_4170 at 4959.668 kb on - strand, within Psyr_4170 at 4959.668 kb on - strand, within Psyr_4170 at 4959.712 kb on + strand, within Psyr_4170 at 4959.712 kb on + strand, within Psyr_4170 at 4959.712 kb on + strand, within Psyr_4170 at 4959.712 kb on + strand, within Psyr_4170 at 4959.713 kb on - strand, within Psyr_4170 at 4959.808 kb on + strand, within Psyr_4170 at 4959.819 kb on + strand, within Psyr_4170 at 4959.820 kb on - strand, within Psyr_4170 at 4959.841 kb on + strand, within Psyr_4170 at 4959.841 kb on + strand, within Psyr_4170 at 4959.842 kb on - strand, within Psyr_4170 at 4959.842 kb on - strand, within Psyr_4170 at 4959.842 kb on - strand, within Psyr_4170 at 4959.842 kb on - strand, within Psyr_4170 at 4959.898 kb on + strand, within Psyr_4170 at 4959.899 kb on - strand, within Psyr_4170 at 4959.899 kb on - strand, within Psyr_4170
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Lupeol 10 mM remove 4,957,088 - +0.2 4,957,088 - -0.5 4,957,089 + -0.1 4,957,089 + -0.1 4,957,089 + +0.6 4,957,089 + -0.6 4,957,089 + -0.9 4,957,089 + +0.2 4,957,090 - +1.3 4,957,090 - +2.1 4,957,090 - -0.8 4,957,090 - -0.2 4,957,142 - +0.1 4,957,257 + -0.3 4,957,257 + +0.4 4,957,257 + +3.3 4,957,257 + -0.3 4,957,258 - -0.4 4,957,258 - +0.2 4,957,258 - -2.4 4,957,258 - +0.5 4,957,258 - +0.1 4,957,259 + +0.9 4,957,401 + -0.1 4,957,401 + -0.7 4,957,401 + +0.8 4,957,402 - Psyr_4167 0.10 -0.9 4,957,402 - Psyr_4167 0.10 -0.0 4,957,439 - Psyr_4167 0.18 +0.4 4,957,465 - Psyr_4167 0.24 -1.0 4,957,505 + Psyr_4167 0.34 -0.4 4,957,529 + Psyr_4167 0.39 +0.3 4,957,530 - Psyr_4167 0.39 -0.4 4,957,532 + Psyr_4167 0.40 +0.5 4,957,831 + +2.0 4,957,831 + +3.9 4,957,832 - +0.2 4,957,890 + +1.7 4,957,890 + -0.2 4,957,891 - +0.5 4,957,891 - +2.0 4,958,019 + Psyr_4168 0.14 +1.2 4,958,020 - Psyr_4168 0.14 -1.1 4,958,020 - Psyr_4168 0.14 +1.1 4,958,094 + Psyr_4168 0.21 -0.1 4,958,094 + Psyr_4168 0.21 -0.9 4,958,095 - Psyr_4168 0.21 +0.3 4,958,095 - Psyr_4168 0.21 +1.7 4,958,095 - Psyr_4168 0.21 +0.7 4,958,095 - Psyr_4168 0.21 +0.9 4,958,095 - Psyr_4168 0.21 -1.9 4,958,095 - Psyr_4168 0.21 -0.4 4,958,095 - Psyr_4168 0.21 +1.2 4,958,341 + Psyr_4168 0.45 +0.1 4,958,353 + Psyr_4168 0.46 +0.1 4,958,467 + Psyr_4168 0.57 +1.1 4,958,705 + Psyr_4168 0.81 +1.7 4,958,706 - Psyr_4168 0.81 -1.7 4,958,706 - Psyr_4168 0.81 +2.5 4,958,757 - Psyr_4168 0.86 -1.3 4,958,766 - Psyr_4168 0.86 +1.1 4,958,766 - Psyr_4168 0.86 +0.7 4,958,766 - Psyr_4168 0.86 +0.6 4,958,844 + -0.7 4,958,922 + +2.1 4,958,923 - -0.2 4,958,923 - +0.6 4,958,998 + Psyr_4169 0.16 -1.7 4,958,998 + Psyr_4169 0.16 +0.3 4,958,998 + Psyr_4169 0.16 +4.4 4,958,999 - Psyr_4169 0.16 +0.1 4,958,999 - Psyr_4169 0.16 +1.1 4,959,304 + -1.0 4,959,304 + -0.0 4,959,304 + +0.5 4,959,304 + -0.7 4,959,304 + +0.4 4,959,304 + -0.5 4,959,304 + -1.2 4,959,305 - -0.5 4,959,305 - +2.1 4,959,319 + +0.4 4,959,319 + +0.4 4,959,319 + +0.8 4,959,319 + +0.7 4,959,319 + -0.9 4,959,320 - +0.4 4,959,320 - -1.0 4,959,320 - -1.3 4,959,320 - +2.3 4,959,415 + Psyr_4170 0.10 +0.7 4,959,416 - Psyr_4170 0.10 +0.4 4,959,416 - Psyr_4170 0.10 -0.9 4,959,416 - Psyr_4170 0.10 +0.4 4,959,445 + Psyr_4170 0.13 -0.7 4,959,445 + Psyr_4170 0.13 -0.5 4,959,445 + Psyr_4170 0.13 +1.0 4,959,445 + Psyr_4170 0.13 -0.7 4,959,445 + Psyr_4170 0.13 +0.6 4,959,445 + Psyr_4170 0.13 +0.6 4,959,445 + Psyr_4170 0.13 +1.7 4,959,445 + Psyr_4170 0.13 -0.4 4,959,445 + Psyr_4170 0.13 -0.1 4,959,446 - Psyr_4170 0.13 +0.7 4,959,446 - Psyr_4170 0.13 +1.3 4,959,446 - Psyr_4170 0.13 -1.5 4,959,446 - Psyr_4170 0.13 -0.3 4,959,446 - Psyr_4170 0.13 -0.2 4,959,446 - Psyr_4170 0.13 -0.4 4,959,446 - Psyr_4170 0.13 -0.2 4,959,476 - Psyr_4170 0.17 +0.3 4,959,476 - Psyr_4170 0.17 -0.0 4,959,476 - Psyr_4170 0.17 +0.2 4,959,667 + Psyr_4170 0.37 +0.8 4,959,667 + Psyr_4170 0.37 +2.2 4,959,667 + Psyr_4170 0.37 -0.6 4,959,667 + Psyr_4170 0.37 -0.3 4,959,667 + Psyr_4170 0.37 +0.5 4,959,667 + Psyr_4170 0.37 +0.6 4,959,667 + Psyr_4170 0.37 -0.0 4,959,667 + Psyr_4170 0.37 -0.3 4,959,668 - Psyr_4170 0.37 -0.2 4,959,668 - Psyr_4170 0.37 +2.4 4,959,668 - Psyr_4170 0.37 +0.9 4,959,668 - Psyr_4170 0.37 +1.1 4,959,668 - Psyr_4170 0.37 +0.0 4,959,668 - Psyr_4170 0.37 -0.5 4,959,712 + Psyr_4170 0.41 -0.8 4,959,712 + Psyr_4170 0.41 +0.5 4,959,712 + Psyr_4170 0.41 -0.5 4,959,712 + Psyr_4170 0.41 +0.7 4,959,713 - Psyr_4170 0.42 +0.2 4,959,808 + Psyr_4170 0.52 +1.7 4,959,819 + Psyr_4170 0.53 +0.5 4,959,820 - Psyr_4170 0.53 -1.5 4,959,841 + Psyr_4170 0.55 +0.4 4,959,841 + Psyr_4170 0.55 +0.4 4,959,842 - Psyr_4170 0.55 -0.9 4,959,842 - Psyr_4170 0.55 +0.2 4,959,842 - Psyr_4170 0.55 -0.6 4,959,842 - Psyr_4170 0.55 +0.2 4,959,898 + Psyr_4170 0.61 -0.2 4,959,899 - Psyr_4170 0.61 +0.2 4,959,899 - Psyr_4170 0.61 +1.5
Or see this region's nucleotide sequence