Experiment: KB with Lupeol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4076 and Psyr_4077 are separated by 158 nucleotides Psyr_4077 and Psyr_4078 are separated by 54 nucleotides
Psyr_4076: Psyr_4076 - conserved hypothetical protein, at 4,859,353 to 4,860,360
_4076
Psyr_4077: Psyr_4077 - Methylated-DNA-[protein]-cysteine S-methyltransferase, at 4,860,519 to 4,860,875
_4077
Psyr_4078: Psyr_4078 - AmpG-related permease, at 4,860,930 to 4,862,480
_4078
Position (kb) 4860
4861 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4859.574 kb on - strand, within Psyr_4076 at 4859.582 kb on + strand, within Psyr_4076 at 4859.583 kb on - strand, within Psyr_4076 at 4859.606 kb on + strand, within Psyr_4076 at 4859.606 kb on + strand, within Psyr_4076 at 4859.607 kb on - strand, within Psyr_4076 at 4859.607 kb on - strand, within Psyr_4076 at 4859.762 kb on + strand, within Psyr_4076 at 4859.762 kb on + strand, within Psyr_4076 at 4859.762 kb on + strand, within Psyr_4076 at 4859.762 kb on + strand, within Psyr_4076 at 4859.762 kb on + strand, within Psyr_4076 at 4859.763 kb on - strand, within Psyr_4076 at 4859.763 kb on - strand, within Psyr_4076 at 4859.870 kb on + strand, within Psyr_4076 at 4859.870 kb on + strand, within Psyr_4076 at 4859.870 kb on + strand, within Psyr_4076 at 4859.870 kb on + strand, within Psyr_4076 at 4859.870 kb on + strand, within Psyr_4076 at 4859.871 kb on - strand, within Psyr_4076 at 4859.871 kb on - strand, within Psyr_4076 at 4859.933 kb on + strand, within Psyr_4076 at 4859.933 kb on + strand, within Psyr_4076 at 4859.933 kb on + strand, within Psyr_4076 at 4859.934 kb on - strand, within Psyr_4076 at 4859.934 kb on - strand, within Psyr_4076 at 4859.934 kb on - strand, within Psyr_4076 at 4860.039 kb on + strand, within Psyr_4076 at 4860.039 kb on + strand, within Psyr_4076 at 4860.039 kb on + strand, within Psyr_4076 at 4860.040 kb on - strand, within Psyr_4076 at 4860.040 kb on - strand, within Psyr_4076 at 4860.040 kb on - strand, within Psyr_4076 at 4860.040 kb on - strand, within Psyr_4076 at 4860.040 kb on - strand, within Psyr_4076 at 4860.216 kb on - strand, within Psyr_4076 at 4860.216 kb on - strand, within Psyr_4076 at 4860.360 kb on + strand at 4860.360 kb on + strand at 4860.360 kb on + strand at 4860.360 kb on + strand at 4860.360 kb on + strand at 4860.360 kb on + strand at 4860.361 kb on - strand at 4860.361 kb on - strand at 4860.371 kb on + strand at 4860.371 kb on + strand at 4860.371 kb on + strand at 4860.371 kb on + strand at 4860.371 kb on + strand at 4860.371 kb on + strand at 4860.371 kb on + strand at 4860.372 kb on - strand at 4860.372 kb on - strand at 4860.372 kb on - strand at 4860.372 kb on - strand at 4860.372 kb on - strand at 4860.372 kb on - strand at 4860.372 kb on - strand at 4860.372 kb on - strand at 4860.372 kb on - strand at 4860.380 kb on + strand at 4860.432 kb on + strand at 4860.432 kb on + strand at 4860.432 kb on + strand at 4860.432 kb on + strand at 4860.432 kb on + strand at 4860.432 kb on + strand at 4860.433 kb on - strand at 4860.433 kb on - strand at 4860.433 kb on - strand at 4860.433 kb on - strand at 4860.433 kb on - strand at 4860.433 kb on - strand at 4860.433 kb on - strand at 4860.503 kb on + strand at 4860.535 kb on + strand at 4860.535 kb on + strand at 4860.535 kb on + strand at 4860.535 kb on + strand at 4860.535 kb on + strand at 4860.536 kb on - strand at 4860.536 kb on - strand at 4860.536 kb on - strand at 4860.536 kb on - strand at 4860.541 kb on + strand at 4860.542 kb on - strand at 4860.542 kb on - strand at 4860.592 kb on - strand, within Psyr_4077 at 4860.653 kb on - strand, within Psyr_4077 at 4860.653 kb on - strand, within Psyr_4077 at 4860.653 kb on - strand, within Psyr_4077 at 4860.653 kb on - strand, within Psyr_4077 at 4860.690 kb on - strand, within Psyr_4077 at 4860.805 kb on + strand, within Psyr_4077 at 4860.845 kb on + strand at 4860.873 kb on + strand at 4860.873 kb on + strand at 4860.966 kb on + strand at 4860.986 kb on - strand at 4860.991 kb on + strand at 4861.023 kb on + strand at 4861.023 kb on + strand at 4861.023 kb on + strand at 4861.023 kb on + strand at 4861.023 kb on + strand at 4861.023 kb on + strand at 4861.024 kb on - strand at 4861.024 kb on - strand at 4861.024 kb on - strand at 4861.024 kb on - strand at 4861.024 kb on - strand at 4861.024 kb on - strand at 4861.024 kb on - strand at 4861.024 kb on - strand at 4861.024 kb on - strand at 4861.024 kb on - strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.025 kb on + strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.026 kb on - strand at 4861.124 kb on + strand, within Psyr_4078 at 4861.124 kb on + strand, within Psyr_4078 at 4861.124 kb on + strand, within Psyr_4078 at 4861.124 kb on + strand, within Psyr_4078 at 4861.125 kb on - strand, within Psyr_4078 at 4861.125 kb on - strand, within Psyr_4078 at 4861.125 kb on - strand, within Psyr_4078 at 4861.392 kb on + strand, within Psyr_4078 at 4861.392 kb on + strand, within Psyr_4078 at 4861.392 kb on + strand, within Psyr_4078 at 4861.392 kb on + strand, within Psyr_4078 at 4861.392 kb on + strand, within Psyr_4078 at 4861.392 kb on + strand, within Psyr_4078 at 4861.392 kb on + strand, within Psyr_4078 at 4861.392 kb on + strand, within Psyr_4078 at 4861.392 kb on + strand, within Psyr_4078 at 4861.392 kb on + strand, within Psyr_4078 at 4861.392 kb on + strand, within Psyr_4078 at 4861.392 kb on + strand, within Psyr_4078 at 4861.392 kb on + strand, within Psyr_4078 at 4861.393 kb on - strand, within Psyr_4078 at 4861.393 kb on - strand, within Psyr_4078 at 4861.393 kb on - strand, within Psyr_4078 at 4861.393 kb on - strand, within Psyr_4078 at 4861.393 kb on - strand, within Psyr_4078 at 4861.393 kb on - strand, within Psyr_4078 at 4861.393 kb on - strand, within Psyr_4078 at 4861.393 kb on - strand, within Psyr_4078 at 4861.393 kb on - strand, within Psyr_4078 at 4861.393 kb on - strand, within Psyr_4078 at 4861.443 kb on + strand, within Psyr_4078 at 4861.443 kb on + strand, within Psyr_4078 at 4861.443 kb on + strand, within Psyr_4078 at 4861.443 kb on + strand, within Psyr_4078 at 4861.444 kb on - strand, within Psyr_4078 at 4861.444 kb on - strand, within Psyr_4078 at 4861.444 kb on - strand, within Psyr_4078 at 4861.444 kb on - strand, within Psyr_4078 at 4861.479 kb on + strand, within Psyr_4078 at 4861.480 kb on - strand, within Psyr_4078 at 4861.480 kb on - strand, within Psyr_4078 at 4861.506 kb on + strand, within Psyr_4078 at 4861.506 kb on + strand, within Psyr_4078 at 4861.506 kb on + strand, within Psyr_4078 at 4861.506 kb on + strand, within Psyr_4078 at 4861.506 kb on + strand, within Psyr_4078 at 4861.506 kb on + strand, within Psyr_4078 at 4861.506 kb on + strand, within Psyr_4078 at 4861.506 kb on + strand, within Psyr_4078 at 4861.506 kb on + strand, within Psyr_4078 at 4861.506 kb on + strand, within Psyr_4078 at 4861.506 kb on + strand, within Psyr_4078 at 4861.506 kb on + strand, within Psyr_4078 at 4861.506 kb on + strand, within Psyr_4078 at 4861.506 kb on + strand, within Psyr_4078 at 4861.506 kb on + strand, within Psyr_4078 at 4861.506 kb on + strand, within Psyr_4078 at 4861.506 kb on + strand, within Psyr_4078 at 4861.506 kb on + strand, within Psyr_4078 at 4861.506 kb on + strand, within Psyr_4078 at 4861.506 kb on + strand, within Psyr_4078 at 4861.507 kb on - strand, within Psyr_4078 at 4861.507 kb on - strand, within Psyr_4078 at 4861.507 kb on - strand, within Psyr_4078 at 4861.507 kb on - strand, within Psyr_4078 at 4861.507 kb on - strand, within Psyr_4078 at 4861.507 kb on - strand, within Psyr_4078 at 4861.507 kb on - strand, within Psyr_4078 at 4861.507 kb on - strand, within Psyr_4078 at 4861.507 kb on - strand, within Psyr_4078 at 4861.507 kb on - strand, within Psyr_4078 at 4861.507 kb on - strand, within Psyr_4078 at 4861.507 kb on - strand, within Psyr_4078 at 4861.507 kb on - strand, within Psyr_4078 at 4861.507 kb on - strand, within Psyr_4078 at 4861.507 kb on - strand, within Psyr_4078 at 4861.507 kb on - strand, within Psyr_4078 at 4861.507 kb on - strand, within Psyr_4078 at 4861.507 kb on - strand, within Psyr_4078 at 4861.507 kb on - strand, within Psyr_4078 at 4861.686 kb on + strand, within Psyr_4078 at 4861.686 kb on + strand, within Psyr_4078 at 4861.686 kb on + strand, within Psyr_4078 at 4861.686 kb on + strand, within Psyr_4078 at 4861.687 kb on - strand, within Psyr_4078 at 4861.777 kb on - strand, within Psyr_4078
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Lupeol 10 mM remove 4,859,574 - Psyr_4076 0.22 +0.2 4,859,582 + Psyr_4076 0.23 +3.6 4,859,583 - Psyr_4076 0.23 -0.3 4,859,606 + Psyr_4076 0.25 -1.6 4,859,606 + Psyr_4076 0.25 +0.2 4,859,607 - Psyr_4076 0.25 +1.0 4,859,607 - Psyr_4076 0.25 -1.0 4,859,762 + Psyr_4076 0.41 +0.4 4,859,762 + Psyr_4076 0.41 +0.7 4,859,762 + Psyr_4076 0.41 +0.2 4,859,762 + Psyr_4076 0.41 +1.0 4,859,762 + Psyr_4076 0.41 -1.6 4,859,763 - Psyr_4076 0.41 +0.5 4,859,763 - Psyr_4076 0.41 +1.5 4,859,870 + Psyr_4076 0.51 +0.2 4,859,870 + Psyr_4076 0.51 +1.3 4,859,870 + Psyr_4076 0.51 -0.1 4,859,870 + Psyr_4076 0.51 -1.1 4,859,870 + Psyr_4076 0.51 -0.3 4,859,871 - Psyr_4076 0.51 +2.2 4,859,871 - Psyr_4076 0.51 -0.8 4,859,933 + Psyr_4076 0.58 +0.2 4,859,933 + Psyr_4076 0.58 -0.4 4,859,933 + Psyr_4076 0.58 +4.5 4,859,934 - Psyr_4076 0.58 +0.6 4,859,934 - Psyr_4076 0.58 +1.0 4,859,934 - Psyr_4076 0.58 +0.0 4,860,039 + Psyr_4076 0.68 -1.0 4,860,039 + Psyr_4076 0.68 +1.6 4,860,039 + Psyr_4076 0.68 -1.4 4,860,040 - Psyr_4076 0.68 +0.2 4,860,040 - Psyr_4076 0.68 -1.7 4,860,040 - Psyr_4076 0.68 +1.4 4,860,040 - Psyr_4076 0.68 +0.7 4,860,040 - Psyr_4076 0.68 +1.2 4,860,216 - Psyr_4076 0.86 -0.3 4,860,216 - Psyr_4076 0.86 +0.1 4,860,360 + -0.1 4,860,360 + +0.4 4,860,360 + -1.3 4,860,360 + -0.1 4,860,360 + -0.4 4,860,360 + -0.8 4,860,361 - -0.3 4,860,361 - -1.2 4,860,371 + -2.2 4,860,371 + -0.5 4,860,371 + +1.3 4,860,371 + -0.8 4,860,371 + +0.5 4,860,371 + +1.8 4,860,371 + -1.6 4,860,372 - +2.4 4,860,372 - -2.4 4,860,372 - +1.4 4,860,372 - -0.1 4,860,372 - +0.2 4,860,372 - +0.5 4,860,372 - +0.0 4,860,372 - +0.2 4,860,372 - +0.1 4,860,380 + +0.0 4,860,432 + -0.2 4,860,432 + +0.6 4,860,432 + +2.0 4,860,432 + -1.5 4,860,432 + +0.5 4,860,432 + -2.0 4,860,433 - -0.1 4,860,433 - +1.1 4,860,433 - +0.4 4,860,433 - +0.0 4,860,433 - -1.0 4,860,433 - -0.3 4,860,433 - -0.2 4,860,503 + +0.4 4,860,535 + +0.5 4,860,535 + +1.1 4,860,535 + -0.0 4,860,535 + +0.1 4,860,535 + -0.1 4,860,536 - -0.6 4,860,536 - +0.1 4,860,536 - +1.1 4,860,536 - +0.0 4,860,541 + +1.2 4,860,542 - +0.9 4,860,542 - -2.0 4,860,592 - Psyr_4077 0.20 +1.8 4,860,653 - Psyr_4077 0.38 +1.9 4,860,653 - Psyr_4077 0.38 +2.0 4,860,653 - Psyr_4077 0.38 +0.2 4,860,653 - Psyr_4077 0.38 -0.6 4,860,690 - Psyr_4077 0.48 +1.3 4,860,805 + Psyr_4077 0.80 +0.6 4,860,845 + -0.2 4,860,873 + +0.1 4,860,873 + +1.4 4,860,966 + +0.2 4,860,986 - -0.2 4,860,991 + +0.2 4,861,023 + -1.2 4,861,023 + -1.4 4,861,023 + -0.8 4,861,023 + -0.4 4,861,023 + -1.1 4,861,023 + +1.3 4,861,024 - -1.3 4,861,024 - -2.7 4,861,024 - -0.5 4,861,024 - +0.9 4,861,024 - +0.0 4,861,024 - -2.0 4,861,024 - +0.6 4,861,024 - -0.6 4,861,024 - +0.5 4,861,024 - -0.7 4,861,025 + +1.0 4,861,025 + +1.3 4,861,025 + -0.3 4,861,025 + +1.0 4,861,025 + +1.6 4,861,025 + -0.9 4,861,025 + -3.4 4,861,025 + -1.7 4,861,025 + +0.0 4,861,025 + -0.5 4,861,025 + +1.7 4,861,025 + +0.4 4,861,025 + +0.4 4,861,025 + +1.6 4,861,025 + -0.6 4,861,025 + -1.2 4,861,025 + -1.3 4,861,025 + -1.3 4,861,026 - -0.6 4,861,026 - +1.0 4,861,026 - -1.3 4,861,026 - +2.6 4,861,026 - -0.1 4,861,026 - +1.0 4,861,026 - +1.3 4,861,026 - +0.7 4,861,026 - +0.4 4,861,026 - +1.6 4,861,026 - +0.0 4,861,026 - -2.0 4,861,026 - -3.7 4,861,026 - -1.4 4,861,026 - -0.8 4,861,026 - -0.7 4,861,026 - +2.0 4,861,026 - +0.4 4,861,026 - -0.7 4,861,026 - -0.7 4,861,026 - +0.3 4,861,124 + Psyr_4078 0.13 -0.9 4,861,124 + Psyr_4078 0.13 +0.2 4,861,124 + Psyr_4078 0.13 -1.0 4,861,124 + Psyr_4078 0.13 +0.9 4,861,125 - Psyr_4078 0.13 +0.1 4,861,125 - Psyr_4078 0.13 -2.4 4,861,125 - Psyr_4078 0.13 -2.0 4,861,392 + Psyr_4078 0.30 +1.4 4,861,392 + Psyr_4078 0.30 +0.6 4,861,392 + Psyr_4078 0.30 +0.1 4,861,392 + Psyr_4078 0.30 -3.2 4,861,392 + Psyr_4078 0.30 -1.1 4,861,392 + Psyr_4078 0.30 +0.4 4,861,392 + Psyr_4078 0.30 -0.6 4,861,392 + Psyr_4078 0.30 +1.8 4,861,392 + Psyr_4078 0.30 +2.0 4,861,392 + Psyr_4078 0.30 +0.0 4,861,392 + Psyr_4078 0.30 +2.3 4,861,392 + Psyr_4078 0.30 -0.4 4,861,392 + Psyr_4078 0.30 +0.9 4,861,393 - Psyr_4078 0.30 +0.9 4,861,393 - Psyr_4078 0.30 -0.3 4,861,393 - Psyr_4078 0.30 -2.8 4,861,393 - Psyr_4078 0.30 -0.8 4,861,393 - Psyr_4078 0.30 -1.6 4,861,393 - Psyr_4078 0.30 +0.0 4,861,393 - Psyr_4078 0.30 -0.4 4,861,393 - Psyr_4078 0.30 -2.7 4,861,393 - Psyr_4078 0.30 +0.5 4,861,393 - Psyr_4078 0.30 -1.5 4,861,443 + Psyr_4078 0.33 +1.0 4,861,443 + Psyr_4078 0.33 -0.8 4,861,443 + Psyr_4078 0.33 -1.8 4,861,443 + Psyr_4078 0.33 -1.0 4,861,444 - Psyr_4078 0.33 -1.4 4,861,444 - Psyr_4078 0.33 +0.0 4,861,444 - Psyr_4078 0.33 -3.3 4,861,444 - Psyr_4078 0.33 +0.5 4,861,479 + Psyr_4078 0.35 -0.5 4,861,480 - Psyr_4078 0.35 +0.0 4,861,480 - Psyr_4078 0.35 -1.2 4,861,506 + Psyr_4078 0.37 -0.8 4,861,506 + Psyr_4078 0.37 -0.6 4,861,506 + Psyr_4078 0.37 -1.4 4,861,506 + Psyr_4078 0.37 -2.7 4,861,506 + Psyr_4078 0.37 +2.6 4,861,506 + Psyr_4078 0.37 -2.0 4,861,506 + Psyr_4078 0.37 -0.2 4,861,506 + Psyr_4078 0.37 -0.4 4,861,506 + Psyr_4078 0.37 -0.4 4,861,506 + Psyr_4078 0.37 -2.7 4,861,506 + Psyr_4078 0.37 +1.0 4,861,506 + Psyr_4078 0.37 +1.3 4,861,506 + Psyr_4078 0.37 +0.0 4,861,506 + Psyr_4078 0.37 +1.5 4,861,506 + Psyr_4078 0.37 -1.0 4,861,506 + Psyr_4078 0.37 -0.2 4,861,506 + Psyr_4078 0.37 -0.6 4,861,506 + Psyr_4078 0.37 -1.3 4,861,506 + Psyr_4078 0.37 +1.6 4,861,506 + Psyr_4078 0.37 +0.8 4,861,507 - Psyr_4078 0.37 -0.5 4,861,507 - Psyr_4078 0.37 -1.2 4,861,507 - Psyr_4078 0.37 -1.1 4,861,507 - Psyr_4078 0.37 -0.6 4,861,507 - Psyr_4078 0.37 -0.2 4,861,507 - Psyr_4078 0.37 -3.2 4,861,507 - Psyr_4078 0.37 +0.4 4,861,507 - Psyr_4078 0.37 -0.9 4,861,507 - Psyr_4078 0.37 -0.5 4,861,507 - Psyr_4078 0.37 -0.9 4,861,507 - Psyr_4078 0.37 -1.3 4,861,507 - Psyr_4078 0.37 +0.2 4,861,507 - Psyr_4078 0.37 -1.0 4,861,507 - Psyr_4078 0.37 -0.7 4,861,507 - Psyr_4078 0.37 -0.2 4,861,507 - Psyr_4078 0.37 -1.2 4,861,507 - Psyr_4078 0.37 -1.0 4,861,507 - Psyr_4078 0.37 +0.5 4,861,507 - Psyr_4078 0.37 +0.3 4,861,686 + Psyr_4078 0.49 +0.0 4,861,686 + Psyr_4078 0.49 -0.3 4,861,686 + Psyr_4078 0.49 -0.6 4,861,686 + Psyr_4078 0.49 -1.3 4,861,687 - Psyr_4078 0.49 +0.2 4,861,777 - Psyr_4078 0.55 +1.0
Or see this region's nucleotide sequence