Experiment: KB with Lupeol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3908 and Psyr_3909 are separated by 128 nucleotides Psyr_3909 and Psyr_3910 are separated by 0 nucleotides Psyr_3910 and Psyr_3911 overlap by 4 nucleotides Psyr_3911 and Psyr_3912 are separated by 60 nucleotides
Psyr_3908: Psyr_3908 - L-aspartate-binding protein / L-glutamate-binding protein, at 4,651,067 to 4,652,068
_3908
Psyr_3909: Psyr_3909 - L-aspartate ABC transporter membrane protein / L-glutamate ABC transporter membrane protein, at 4,652,197 to 4,652,943
_3909
Psyr_3910: Psyr_3910 - L-aspartate ABC transporter membrane protein / L-glutamate ABC transporter membrane protein, at 4,652,944 to 4,653,609
_3910
Psyr_3911: Psyr_3911 - L-aspartate ABC transporter ATP-binding protein / L-glutamate ABC transporter ATP-binding protein, at 4,653,606 to 4,654,340
_3911
Psyr_3912: Psyr_3912 - ATP-binding region, ATPase-like:Histidine kinase A, N-terminal, at 4,654,401 to 4,656,308
_3912
Position (kb) 4652
4653
4654 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4651.944 kb on - strand, within Psyr_3908 at 4651.944 kb on - strand, within Psyr_3908 at 4651.944 kb on - strand, within Psyr_3908 at 4651.944 kb on - strand, within Psyr_3908 at 4652.167 kb on - strand at 4652.177 kb on - strand at 4652.203 kb on + strand at 4652.204 kb on - strand at 4652.204 kb on - strand at 4652.204 kb on - strand at 4652.204 kb on - strand at 4652.204 kb on - strand at 4652.222 kb on + strand at 4652.223 kb on - strand at 4652.257 kb on + strand at 4652.257 kb on + strand at 4652.257 kb on + strand at 4652.258 kb on - strand at 4652.258 kb on - strand at 4652.258 kb on - strand at 4652.258 kb on - strand at 4652.306 kb on + strand, within Psyr_3909 at 4652.306 kb on + strand, within Psyr_3909 at 4652.306 kb on + strand, within Psyr_3909 at 4652.306 kb on + strand, within Psyr_3909 at 4652.307 kb on - strand, within Psyr_3909 at 4652.307 kb on - strand, within Psyr_3909 at 4652.307 kb on - strand, within Psyr_3909 at 4652.307 kb on - strand, within Psyr_3909 at 4652.397 kb on - strand, within Psyr_3909 at 4652.397 kb on - strand, within Psyr_3909 at 4652.398 kb on + strand, within Psyr_3909 at 4652.398 kb on + strand, within Psyr_3909 at 4652.398 kb on + strand, within Psyr_3909 at 4652.398 kb on + strand, within Psyr_3909 at 4652.398 kb on + strand, within Psyr_3909 at 4652.398 kb on + strand, within Psyr_3909 at 4652.398 kb on + strand, within Psyr_3909 at 4652.398 kb on + strand, within Psyr_3909 at 4652.399 kb on - strand, within Psyr_3909 at 4652.399 kb on - strand, within Psyr_3909 at 4652.399 kb on - strand, within Psyr_3909 at 4652.399 kb on - strand, within Psyr_3909 at 4652.399 kb on - strand, within Psyr_3909 at 4652.399 kb on - strand, within Psyr_3909 at 4652.399 kb on - strand, within Psyr_3909 at 4652.399 kb on - strand, within Psyr_3909 at 4652.449 kb on + strand, within Psyr_3909 at 4652.449 kb on + strand, within Psyr_3909 at 4652.450 kb on - strand, within Psyr_3909 at 4652.494 kb on + strand, within Psyr_3909 at 4652.494 kb on + strand, within Psyr_3909 at 4652.538 kb on - strand, within Psyr_3909 at 4652.851 kb on + strand, within Psyr_3909 at 4652.851 kb on + strand, within Psyr_3909 at 4652.851 kb on + strand, within Psyr_3909 at 4652.851 kb on + strand, within Psyr_3909 at 4652.851 kb on + strand, within Psyr_3909 at 4652.851 kb on + strand, within Psyr_3909 at 4652.851 kb on + strand, within Psyr_3909 at 4652.851 kb on + strand, within Psyr_3909 at 4652.852 kb on - strand, within Psyr_3909 at 4652.852 kb on - strand, within Psyr_3909 at 4652.852 kb on - strand, within Psyr_3909 at 4652.852 kb on - strand, within Psyr_3909 at 4652.941 kb on + strand at 4652.941 kb on + strand at 4652.942 kb on - strand at 4653.110 kb on - strand, within Psyr_3910 at 4653.118 kb on + strand, within Psyr_3910 at 4653.118 kb on + strand, within Psyr_3910 at 4653.118 kb on + strand, within Psyr_3910 at 4653.119 kb on - strand, within Psyr_3910 at 4653.160 kb on + strand, within Psyr_3910 at 4653.160 kb on + strand, within Psyr_3910 at 4653.160 kb on + strand, within Psyr_3910 at 4653.161 kb on - strand, within Psyr_3910 at 4653.161 kb on - strand, within Psyr_3910 at 4653.262 kb on + strand, within Psyr_3910 at 4653.262 kb on + strand, within Psyr_3910 at 4653.262 kb on + strand, within Psyr_3910 at 4653.262 kb on + strand, within Psyr_3910 at 4653.262 kb on + strand, within Psyr_3910 at 4653.343 kb on + strand, within Psyr_3910 at 4653.344 kb on - strand, within Psyr_3910 at 4653.344 kb on - strand, within Psyr_3910 at 4653.344 kb on - strand, within Psyr_3910 at 4653.344 kb on - strand, within Psyr_3910 at 4653.448 kb on + strand, within Psyr_3910 at 4653.448 kb on + strand, within Psyr_3910 at 4653.448 kb on + strand, within Psyr_3910 at 4653.448 kb on + strand, within Psyr_3910 at 4653.448 kb on + strand, within Psyr_3910 at 4653.448 kb on + strand, within Psyr_3910 at 4653.449 kb on - strand, within Psyr_3910 at 4653.449 kb on - strand, within Psyr_3910 at 4653.449 kb on - strand, within Psyr_3910 at 4653.449 kb on - strand, within Psyr_3910 at 4653.544 kb on + strand at 4653.544 kb on + strand at 4653.544 kb on + strand at 4653.545 kb on - strand at 4653.606 kb on - strand at 4653.653 kb on - strand at 4653.653 kb on - strand at 4654.338 kb on + strand at 4654.339 kb on - strand at 4654.346 kb on - strand at 4654.346 kb on - strand at 4654.518 kb on + strand at 4654.518 kb on + strand at 4654.518 kb on + strand at 4654.519 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Lupeol 10 mM remove 4,651,944 - Psyr_3908 0.88 +1.0 4,651,944 - Psyr_3908 0.88 -1.2 4,651,944 - Psyr_3908 0.88 +0.8 4,651,944 - Psyr_3908 0.88 -0.4 4,652,167 - -0.1 4,652,177 - +0.9 4,652,203 + -1.2 4,652,204 - -1.0 4,652,204 - +0.2 4,652,204 - +0.0 4,652,204 - -1.1 4,652,204 - +1.8 4,652,222 + -1.2 4,652,223 - -0.5 4,652,257 + -1.1 4,652,257 + +0.8 4,652,257 + +1.6 4,652,258 - -0.6 4,652,258 - -2.0 4,652,258 - -0.3 4,652,258 - -1.1 4,652,306 + Psyr_3909 0.15 +1.7 4,652,306 + Psyr_3909 0.15 +1.2 4,652,306 + Psyr_3909 0.15 -0.6 4,652,306 + Psyr_3909 0.15 +0.6 4,652,307 - Psyr_3909 0.15 -1.6 4,652,307 - Psyr_3909 0.15 -0.3 4,652,307 - Psyr_3909 0.15 +0.2 4,652,307 - Psyr_3909 0.15 +1.4 4,652,397 - Psyr_3909 0.27 -1.1 4,652,397 - Psyr_3909 0.27 -3.7 4,652,398 + Psyr_3909 0.27 +0.3 4,652,398 + Psyr_3909 0.27 -0.7 4,652,398 + Psyr_3909 0.27 -0.1 4,652,398 + Psyr_3909 0.27 -2.3 4,652,398 + Psyr_3909 0.27 +0.5 4,652,398 + Psyr_3909 0.27 +3.6 4,652,398 + Psyr_3909 0.27 -0.7 4,652,398 + Psyr_3909 0.27 -1.1 4,652,399 - Psyr_3909 0.27 -0.1 4,652,399 - Psyr_3909 0.27 +0.8 4,652,399 - Psyr_3909 0.27 +0.0 4,652,399 - Psyr_3909 0.27 -1.6 4,652,399 - Psyr_3909 0.27 +0.3 4,652,399 - Psyr_3909 0.27 +0.7 4,652,399 - Psyr_3909 0.27 +0.5 4,652,399 - Psyr_3909 0.27 +1.2 4,652,449 + Psyr_3909 0.34 +1.3 4,652,449 + Psyr_3909 0.34 +0.7 4,652,450 - Psyr_3909 0.34 +1.0 4,652,494 + Psyr_3909 0.40 -0.3 4,652,494 + Psyr_3909 0.40 +0.4 4,652,538 - Psyr_3909 0.46 +0.3 4,652,851 + Psyr_3909 0.88 -0.9 4,652,851 + Psyr_3909 0.88 -0.8 4,652,851 + Psyr_3909 0.88 +1.3 4,652,851 + Psyr_3909 0.88 -0.4 4,652,851 + Psyr_3909 0.88 -0.2 4,652,851 + Psyr_3909 0.88 -0.4 4,652,851 + Psyr_3909 0.88 +1.1 4,652,851 + Psyr_3909 0.88 +0.9 4,652,852 - Psyr_3909 0.88 -0.1 4,652,852 - Psyr_3909 0.88 -1.6 4,652,852 - Psyr_3909 0.88 -0.4 4,652,852 - Psyr_3909 0.88 +3.3 4,652,941 + +1.2 4,652,941 + -2.3 4,652,942 - +0.4 4,653,110 - Psyr_3910 0.25 +1.6 4,653,118 + Psyr_3910 0.26 +2.0 4,653,118 + Psyr_3910 0.26 +1.0 4,653,118 + Psyr_3910 0.26 -0.4 4,653,119 - Psyr_3910 0.26 +0.4 4,653,160 + Psyr_3910 0.32 -1.1 4,653,160 + Psyr_3910 0.32 +1.6 4,653,160 + Psyr_3910 0.32 +1.3 4,653,161 - Psyr_3910 0.33 +0.3 4,653,161 - Psyr_3910 0.33 -0.7 4,653,262 + Psyr_3910 0.48 +0.7 4,653,262 + Psyr_3910 0.48 -1.8 4,653,262 + Psyr_3910 0.48 +0.0 4,653,262 + Psyr_3910 0.48 -0.7 4,653,262 + Psyr_3910 0.48 +0.2 4,653,343 + Psyr_3910 0.60 +3.0 4,653,344 - Psyr_3910 0.60 +1.2 4,653,344 - Psyr_3910 0.60 +0.1 4,653,344 - Psyr_3910 0.60 +0.9 4,653,344 - Psyr_3910 0.60 -0.7 4,653,448 + Psyr_3910 0.76 -1.2 4,653,448 + Psyr_3910 0.76 +2.8 4,653,448 + Psyr_3910 0.76 +3.6 4,653,448 + Psyr_3910 0.76 +0.4 4,653,448 + Psyr_3910 0.76 -2.6 4,653,448 + Psyr_3910 0.76 +0.4 4,653,449 - Psyr_3910 0.76 +1.1 4,653,449 - Psyr_3910 0.76 +1.6 4,653,449 - Psyr_3910 0.76 +4.0 4,653,449 - Psyr_3910 0.76 +0.7 4,653,544 + -2.2 4,653,544 + +3.0 4,653,544 + -0.4 4,653,545 - -2.2 4,653,606 - +0.0 4,653,653 - +0.4 4,653,653 - -0.2 4,654,338 + +1.0 4,654,339 - +1.2 4,654,346 - -1.4 4,654,346 - -0.4 4,654,518 + -0.7 4,654,518 + +1.8 4,654,518 + +0.9 4,654,519 - +1.3
Or see this region's nucleotide sequence