Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3753

Experiment: KB with Lupeol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3751 and Psyr_3752 are separated by 170 nucleotidesPsyr_3752 and Psyr_3753 are separated by 305 nucleotidesPsyr_3753 and Psyr_3754 are separated by 33 nucleotidesPsyr_3754 and Psyr_3755 are separated by 313 nucleotides Psyr_3751: Psyr_3751 - Carbon storage regulator, at 4,469,613 to 4,469,807 _3751 Psyr_3752: Psyr_3752 - Protein of unknown function UPF0060, at 4,469,978 to 4,470,310 _3752 Psyr_3753: Psyr_3753 - Short-chain dehydrogenase/reductase SDR, at 4,470,616 to 4,471,500 _3753 Psyr_3754: Psyr_3754 - conserved hypothetical protein, at 4,471,534 to 4,471,914 _3754 Psyr_3755: Psyr_3755 - conserved hypothetical protein, at 4,472,228 to 4,472,386 _3755 Position (kb) 4470 4471 4472Strain fitness (log2 ratio) -2 -1 0 1 2at 4469.665 kb on + strand, within Psyr_3751at 4469.665 kb on + strand, within Psyr_3751at 4469.665 kb on + strand, within Psyr_3751at 4469.666 kb on - strand, within Psyr_3751at 4469.666 kb on - strand, within Psyr_3751at 4469.666 kb on - strand, within Psyr_3751at 4469.666 kb on - strand, within Psyr_3751at 4469.800 kb on - strandat 4469.888 kb on - strandat 4469.930 kb on + strandat 4469.931 kb on - strandat 4469.957 kb on - strandat 4470.111 kb on + strand, within Psyr_3752at 4470.111 kb on + strand, within Psyr_3752at 4470.111 kb on + strand, within Psyr_3752at 4470.111 kb on + strand, within Psyr_3752at 4470.111 kb on + strand, within Psyr_3752at 4470.112 kb on - strand, within Psyr_3752at 4470.112 kb on - strand, within Psyr_3752at 4470.112 kb on - strand, within Psyr_3752at 4470.112 kb on - strand, within Psyr_3752at 4470.112 kb on - strand, within Psyr_3752at 4470.112 kb on - strand, within Psyr_3752at 4470.112 kb on - strand, within Psyr_3752at 4470.112 kb on - strand, within Psyr_3752at 4470.112 kb on - strand, within Psyr_3752at 4470.112 kb on - strand, within Psyr_3752at 4470.112 kb on - strand, within Psyr_3752at 4470.124 kb on - strand, within Psyr_3752at 4470.236 kb on + strand, within Psyr_3752at 4470.237 kb on - strand, within Psyr_3752at 4470.255 kb on + strand, within Psyr_3752at 4470.255 kb on + strand, within Psyr_3752at 4470.256 kb on - strand, within Psyr_3752at 4470.256 kb on - strand, within Psyr_3752at 4470.256 kb on - strand, within Psyr_3752at 4470.256 kb on - strand, within Psyr_3752at 4470.256 kb on - strand, within Psyr_3752at 4470.266 kb on + strand, within Psyr_3752at 4470.267 kb on - strand, within Psyr_3752at 4470.300 kb on + strandat 4470.300 kb on + strandat 4470.300 kb on + strandat 4470.300 kb on + strandat 4470.413 kb on + strandat 4470.677 kb on + strandat 4470.677 kb on + strandat 4470.677 kb on + strandat 4470.677 kb on + strandat 4470.678 kb on - strandat 4470.678 kb on - strandat 4470.983 kb on + strand, within Psyr_3753at 4470.983 kb on + strand, within Psyr_3753at 4470.983 kb on + strand, within Psyr_3753at 4470.984 kb on - strand, within Psyr_3753at 4470.984 kb on - strand, within Psyr_3753at 4470.984 kb on - strand, within Psyr_3753at 4470.984 kb on - strand, within Psyr_3753at 4471.062 kb on + strand, within Psyr_3753at 4471.063 kb on - strand, within Psyr_3753at 4471.063 kb on - strand, within Psyr_3753at 4471.244 kb on + strand, within Psyr_3753at 4471.294 kb on + strand, within Psyr_3753at 4471.294 kb on + strand, within Psyr_3753at 4471.294 kb on + strand, within Psyr_3753at 4471.295 kb on - strand, within Psyr_3753at 4471.295 kb on - strand, within Psyr_3753at 4471.295 kb on - strand, within Psyr_3753at 4471.410 kb on + strand, within Psyr_3753at 4471.410 kb on + strand, within Psyr_3753at 4471.469 kb on + strandat 4471.469 kb on + strandat 4471.469 kb on + strandat 4471.470 kb on - strandat 4471.470 kb on - strandat 4471.470 kb on - strandat 4471.559 kb on + strandat 4471.559 kb on + strandat 4471.580 kb on + strand, within Psyr_3754at 4471.580 kb on + strand, within Psyr_3754at 4471.580 kb on + strand, within Psyr_3754at 4471.580 kb on + strand, within Psyr_3754at 4471.627 kb on + strand, within Psyr_3754at 4471.670 kb on + strand, within Psyr_3754at 4471.670 kb on + strand, within Psyr_3754at 4471.695 kb on - strand, within Psyr_3754at 4471.751 kb on + strand, within Psyr_3754at 4471.751 kb on + strand, within Psyr_3754at 4471.752 kb on - strand, within Psyr_3754at 4471.828 kb on + strand, within Psyr_3754at 4471.867 kb on + strand, within Psyr_3754at 4471.867 kb on + strand, within Psyr_3754at 4471.867 kb on + strand, within Psyr_3754at 4471.868 kb on - strand, within Psyr_3754at 4471.868 kb on - strand, within Psyr_3754at 4472.196 kb on + strandat 4472.201 kb on - strandat 4472.201 kb on - strandat 4472.207 kb on - strandat 4472.207 kb on - strandat 4472.211 kb on + strandat 4472.212 kb on - strandat 4472.248 kb on + strand, within Psyr_3755at 4472.272 kb on - strand, within Psyr_3755at 4472.315 kb on + strand, within Psyr_3755at 4472.382 kb on + strandat 4472.382 kb on + strandat 4472.382 kb on + strandat 4472.382 kb on + strandat 4472.383 kb on - strandat 4472.411 kb on + strandat 4472.412 kb on - strandat 4472.412 kb on - strandat 4472.412 kb on - strandat 4472.413 kb on + strandat 4472.413 kb on + strandat 4472.413 kb on + strandat 4472.413 kb on + strandat 4472.413 kb on + strandat 4472.413 kb on + strandat 4472.414 kb on - strandat 4472.414 kb on - strandat 4472.414 kb on - strandat 4472.421 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Lupeol 10 mM
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4,469,665 + Psyr_3751 0.27 +0.6
4,469,665 + Psyr_3751 0.27 -0.3
4,469,665 + Psyr_3751 0.27 -2.0
4,469,666 - Psyr_3751 0.27 +0.3
4,469,666 - Psyr_3751 0.27 +0.7
4,469,666 - Psyr_3751 0.27 +1.3
4,469,666 - Psyr_3751 0.27 -0.2
4,469,800 - -0.5
4,469,888 - -0.0
4,469,930 + -0.1
4,469,931 - -0.5
4,469,957 - -0.7
4,470,111 + Psyr_3752 0.40 -0.6
4,470,111 + Psyr_3752 0.40 +0.3
4,470,111 + Psyr_3752 0.40 -1.3
4,470,111 + Psyr_3752 0.40 +0.6
4,470,111 + Psyr_3752 0.40 -1.4
4,470,112 - Psyr_3752 0.40 -0.6
4,470,112 - Psyr_3752 0.40 -0.6
4,470,112 - Psyr_3752 0.40 +0.3
4,470,112 - Psyr_3752 0.40 -1.2
4,470,112 - Psyr_3752 0.40 -1.9
4,470,112 - Psyr_3752 0.40 -0.5
4,470,112 - Psyr_3752 0.40 -0.3
4,470,112 - Psyr_3752 0.40 +0.7
4,470,112 - Psyr_3752 0.40 +0.5
4,470,112 - Psyr_3752 0.40 +1.1
4,470,112 - Psyr_3752 0.40 -1.0
4,470,124 - Psyr_3752 0.44 +0.0
4,470,236 + Psyr_3752 0.77 +1.6
4,470,237 - Psyr_3752 0.78 +0.5
4,470,255 + Psyr_3752 0.83 +2.6
4,470,255 + Psyr_3752 0.83 +0.5
4,470,256 - Psyr_3752 0.83 -0.4
4,470,256 - Psyr_3752 0.83 -2.0
4,470,256 - Psyr_3752 0.83 -0.7
4,470,256 - Psyr_3752 0.83 +0.4
4,470,256 - Psyr_3752 0.83 +0.2
4,470,266 + Psyr_3752 0.86 -2.4
4,470,267 - Psyr_3752 0.87 -0.4
4,470,300 + -0.3
4,470,300 + -0.5
4,470,300 + -0.4
4,470,300 + -1.0
4,470,413 + +0.5
4,470,677 + -0.9
4,470,677 + -1.1
4,470,677 + -0.6
4,470,677 + -1.0
4,470,678 - +1.0
4,470,678 - -1.3
4,470,983 + Psyr_3753 0.41 +0.2
4,470,983 + Psyr_3753 0.41 +0.6
4,470,983 + Psyr_3753 0.41 +2.0
4,470,984 - Psyr_3753 0.42 -0.4
4,470,984 - Psyr_3753 0.42 +2.7
4,470,984 - Psyr_3753 0.42 -0.6
4,470,984 - Psyr_3753 0.42 +0.9
4,471,062 + Psyr_3753 0.50 +0.8
4,471,063 - Psyr_3753 0.51 -0.5
4,471,063 - Psyr_3753 0.51 -0.7
4,471,244 + Psyr_3753 0.71 -1.3
4,471,294 + Psyr_3753 0.77 +2.0
4,471,294 + Psyr_3753 0.77 +0.8
4,471,294 + Psyr_3753 0.77 +1.1
4,471,295 - Psyr_3753 0.77 -0.2
4,471,295 - Psyr_3753 0.77 +1.2
4,471,295 - Psyr_3753 0.77 +0.8
4,471,410 + Psyr_3753 0.90 -2.0
4,471,410 + Psyr_3753 0.90 +1.6
4,471,469 + -0.7
4,471,469 + -0.8
4,471,469 + +0.1
4,471,470 - +0.1
4,471,470 - -0.7
4,471,470 - -1.4
4,471,559 + +0.4
4,471,559 + +0.1
4,471,580 + Psyr_3754 0.12 -0.2
4,471,580 + Psyr_3754 0.12 +1.0
4,471,580 + Psyr_3754 0.12 -1.8
4,471,580 + Psyr_3754 0.12 -0.2
4,471,627 + Psyr_3754 0.24 +0.2
4,471,670 + Psyr_3754 0.36 -0.6
4,471,670 + Psyr_3754 0.36 -1.4
4,471,695 - Psyr_3754 0.42 -0.4
4,471,751 + Psyr_3754 0.57 -0.3
4,471,751 + Psyr_3754 0.57 +2.1
4,471,752 - Psyr_3754 0.57 -0.6
4,471,828 + Psyr_3754 0.77 -0.3
4,471,867 + Psyr_3754 0.87 +1.5
4,471,867 + Psyr_3754 0.87 +0.0
4,471,867 + Psyr_3754 0.87 -0.3
4,471,868 - Psyr_3754 0.88 -1.1
4,471,868 - Psyr_3754 0.88 -2.2
4,472,196 + -0.9
4,472,201 - -0.8
4,472,201 - +0.3
4,472,207 - +0.0
4,472,207 - -0.1
4,472,211 + -0.2
4,472,212 - -0.5
4,472,248 + Psyr_3755 0.13 +0.4
4,472,272 - Psyr_3755 0.28 -1.2
4,472,315 + Psyr_3755 0.55 -0.5
4,472,382 + -1.6
4,472,382 + -0.4
4,472,382 + +2.0
4,472,382 + -0.6
4,472,383 - -0.9
4,472,411 + -1.0
4,472,412 - +0.5
4,472,412 - -0.5
4,472,412 - +0.3
4,472,413 + -0.6
4,472,413 + -0.2
4,472,413 + +2.0
4,472,413 + +0.6
4,472,413 + +0.7
4,472,413 + -0.4
4,472,414 - -1.0
4,472,414 - +0.1
4,472,414 - +1.7
4,472,421 - +0.7

Or see this region's nucleotide sequence