Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3748

Experiment: KB with Lupeol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3747 and Psyr_3748 are separated by 3 nucleotidesPsyr_3748 and Psyr_3749 are separated by 79 nucleotides Psyr_3747: Psyr_3747 - asparagine synthase (glutamine-hydrolysing), at 4,464,461 to 4,466,233 _3747 Psyr_3748: Psyr_3748 - GCN5-related N-acetyltransferase, at 4,466,237 to 4,467,985 _3748 Psyr_3749: Psyr_3749 - Peptidase M42, at 4,468,065 to 4,469,261 _3749 Position (kb) 4466 4467 4468Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4465.520 kb on + strand, within Psyr_3747at 4465.520 kb on + strand, within Psyr_3747at 4465.521 kb on - strand, within Psyr_3747at 4465.560 kb on + strand, within Psyr_3747at 4465.599 kb on - strand, within Psyr_3747at 4465.682 kb on + strand, within Psyr_3747at 4465.682 kb on + strand, within Psyr_3747at 4465.682 kb on + strand, within Psyr_3747at 4466.019 kb on - strand, within Psyr_3747at 4466.062 kb on + strandat 4466.063 kb on - strandat 4466.258 kb on + strandat 4466.258 kb on + strandat 4466.258 kb on + strandat 4466.258 kb on + strandat 4466.259 kb on - strandat 4466.259 kb on - strandat 4466.260 kb on + strandat 4466.260 kb on + strandat 4466.294 kb on + strandat 4466.295 kb on - strandat 4466.295 kb on - strandat 4466.337 kb on + strandat 4466.337 kb on + strandat 4466.337 kb on + strandat 4466.337 kb on + strandat 4466.337 kb on + strandat 4466.338 kb on - strandat 4466.338 kb on - strandat 4466.465 kb on + strand, within Psyr_3748at 4466.465 kb on + strand, within Psyr_3748at 4466.465 kb on + strand, within Psyr_3748at 4466.465 kb on + strand, within Psyr_3748at 4466.465 kb on + strand, within Psyr_3748at 4466.466 kb on - strand, within Psyr_3748at 4466.466 kb on - strand, within Psyr_3748at 4466.466 kb on - strand, within Psyr_3748at 4466.708 kb on + strand, within Psyr_3748at 4466.708 kb on + strand, within Psyr_3748at 4466.906 kb on + strand, within Psyr_3748at 4466.907 kb on - strand, within Psyr_3748at 4466.907 kb on - strand, within Psyr_3748at 4466.907 kb on - strand, within Psyr_3748at 4466.907 kb on - strand, within Psyr_3748at 4466.955 kb on - strand, within Psyr_3748at 4467.149 kb on + strand, within Psyr_3748at 4467.149 kb on + strand, within Psyr_3748at 4467.150 kb on - strand, within Psyr_3748at 4467.678 kb on - strand, within Psyr_3748at 4467.737 kb on - strand, within Psyr_3748at 4467.831 kb on + strandat 4467.872 kb on + strandat 4467.872 kb on + strandat 4467.901 kb on - strandat 4467.979 kb on + strandat 4467.979 kb on + strandat 4467.979 kb on + strandat 4467.979 kb on + strandat 4467.980 kb on - strandat 4467.980 kb on - strandat 4468.053 kb on + strandat 4468.053 kb on + strandat 4468.054 kb on - strandat 4468.079 kb on + strandat 4468.079 kb on + strandat 4468.101 kb on + strandat 4468.101 kb on + strandat 4468.102 kb on - strandat 4468.102 kb on - strandat 4468.163 kb on + strandat 4468.163 kb on + strandat 4468.163 kb on + strandat 4468.164 kb on - strandat 4468.164 kb on - strandat 4468.164 kb on - strandat 4468.164 kb on - strandat 4468.323 kb on - strand, within Psyr_3749at 4468.524 kb on + strand, within Psyr_3749at 4468.524 kb on + strand, within Psyr_3749at 4468.881 kb on + strand, within Psyr_3749at 4468.962 kb on + strand, within Psyr_3749at 4468.962 kb on + strand, within Psyr_3749at 4468.962 kb on + strand, within Psyr_3749at 4468.965 kb on + strand, within Psyr_3749at 4468.965 kb on + strand, within Psyr_3749at 4468.965 kb on + strand, within Psyr_3749at 4468.966 kb on - strand, within Psyr_3749at 4468.966 kb on - strand, within Psyr_3749at 4468.966 kb on - strand, within Psyr_3749at 4468.966 kb on - strand, within Psyr_3749at 4468.966 kb on - strand, within Psyr_3749at 4468.966 kb on - strand, within Psyr_3749at 4468.966 kb on - strand, within Psyr_3749

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Lupeol 10 mM
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4,465,520 + Psyr_3747 0.60 +0.7
4,465,520 + Psyr_3747 0.60 -0.6
4,465,521 - Psyr_3747 0.60 +0.8
4,465,560 + Psyr_3747 0.62 +1.1
4,465,599 - Psyr_3747 0.64 +0.6
4,465,682 + Psyr_3747 0.69 +0.6
4,465,682 + Psyr_3747 0.69 -0.2
4,465,682 + Psyr_3747 0.69 -0.4
4,466,019 - Psyr_3747 0.88 +0.4
4,466,062 + -1.4
4,466,063 - +3.3
4,466,258 + +0.7
4,466,258 + -0.6
4,466,258 + +0.0
4,466,258 + +1.0
4,466,259 - +0.6
4,466,259 - +0.1
4,466,260 + +0.0
4,466,260 + -2.7
4,466,294 + -0.6
4,466,295 - +0.2
4,466,295 - -1.0
4,466,337 + +0.0
4,466,337 + -0.8
4,466,337 + -1.8
4,466,337 + +0.7
4,466,337 + +0.9
4,466,338 - -0.8
4,466,338 - -0.4
4,466,465 + Psyr_3748 0.13 +3.6
4,466,465 + Psyr_3748 0.13 +0.8
4,466,465 + Psyr_3748 0.13 +1.0
4,466,465 + Psyr_3748 0.13 -0.6
4,466,465 + Psyr_3748 0.13 +0.0
4,466,466 - Psyr_3748 0.13 +1.3
4,466,466 - Psyr_3748 0.13 +0.9
4,466,466 - Psyr_3748 0.13 -0.1
4,466,708 + Psyr_3748 0.27 +0.4
4,466,708 + Psyr_3748 0.27 -0.9
4,466,906 + Psyr_3748 0.38 +0.2
4,466,907 - Psyr_3748 0.38 -0.6
4,466,907 - Psyr_3748 0.38 +2.1
4,466,907 - Psyr_3748 0.38 +1.2
4,466,907 - Psyr_3748 0.38 +0.0
4,466,955 - Psyr_3748 0.41 -0.9
4,467,149 + Psyr_3748 0.52 +0.2
4,467,149 + Psyr_3748 0.52 +0.9
4,467,150 - Psyr_3748 0.52 -0.3
4,467,678 - Psyr_3748 0.82 +0.9
4,467,737 - Psyr_3748 0.86 +0.8
4,467,831 + +2.6
4,467,872 + +0.4
4,467,872 + -0.7
4,467,901 - +0.4
4,467,979 + -1.7
4,467,979 + +2.6
4,467,979 + +0.3
4,467,979 + +0.6
4,467,980 - +0.8
4,467,980 - +1.6
4,468,053 + -2.4
4,468,053 + -0.6
4,468,054 - +1.3
4,468,079 + -0.8
4,468,079 + +2.4
4,468,101 + -0.6
4,468,101 + +0.6
4,468,102 - +1.4
4,468,102 - +0.3
4,468,163 + +0.3
4,468,163 + +0.3
4,468,163 + +0.4
4,468,164 - +1.0
4,468,164 - +0.3
4,468,164 - +0.7
4,468,164 - +1.7
4,468,323 - Psyr_3749 0.22 -0.4
4,468,524 + Psyr_3749 0.38 -0.4
4,468,524 + Psyr_3749 0.38 +1.1
4,468,881 + Psyr_3749 0.68 +0.2
4,468,962 + Psyr_3749 0.75 +0.4
4,468,962 + Psyr_3749 0.75 -0.8
4,468,962 + Psyr_3749 0.75 -1.2
4,468,965 + Psyr_3749 0.75 +0.6
4,468,965 + Psyr_3749 0.75 +1.0
4,468,965 + Psyr_3749 0.75 -0.9
4,468,966 - Psyr_3749 0.75 -0.8
4,468,966 - Psyr_3749 0.75 -0.9
4,468,966 - Psyr_3749 0.75 +0.0
4,468,966 - Psyr_3749 0.75 +0.4
4,468,966 - Psyr_3749 0.75 -2.8
4,468,966 - Psyr_3749 0.75 -1.4
4,468,966 - Psyr_3749 0.75 -1.0

Or see this region's nucleotide sequence