Experiment: KB with Lupeol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3506 and Psyr_3507 are separated by 10 nucleotides Psyr_3507 and Psyr_3508 overlap by 4 nucleotides
Psyr_3506: Psyr_3506 - Sulfatase, at 4,180,950 to 4,182,983
_3506
Psyr_3507: Psyr_3507 - membrane protein, putative, at 4,182,994 to 4,183,614
_3507
Psyr_3508: Psyr_3508 - Glycosyl hydrolase, BNR repeat protein, at 4,183,611 to 4,184,909
_3508
Position (kb) 4182
4183
4184 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4182.200 kb on - strand at 4182.218 kb on - strand, within Psyr_3506 at 4182.502 kb on - strand, within Psyr_3506 at 4182.560 kb on - strand, within Psyr_3506 at 4182.560 kb on - strand, within Psyr_3506 at 4182.641 kb on - strand, within Psyr_3506 at 4182.646 kb on + strand, within Psyr_3506 at 4182.646 kb on + strand, within Psyr_3506 at 4182.667 kb on + strand, within Psyr_3506 at 4182.667 kb on + strand, within Psyr_3506 at 4182.667 kb on + strand, within Psyr_3506 at 4182.667 kb on + strand, within Psyr_3506 at 4182.667 kb on + strand, within Psyr_3506 at 4182.667 kb on + strand, within Psyr_3506 at 4182.667 kb on + strand, within Psyr_3506 at 4182.667 kb on + strand, within Psyr_3506 at 4182.667 kb on + strand, within Psyr_3506 at 4182.668 kb on - strand, within Psyr_3506 at 4182.668 kb on - strand, within Psyr_3506 at 4182.668 kb on - strand, within Psyr_3506 at 4182.668 kb on - strand, within Psyr_3506 at 4182.668 kb on - strand, within Psyr_3506 at 4182.668 kb on - strand, within Psyr_3506 at 4182.668 kb on - strand, within Psyr_3506 at 4182.668 kb on - strand, within Psyr_3506 at 4182.668 kb on - strand, within Psyr_3506 at 4182.668 kb on - strand, within Psyr_3506 at 4182.889 kb on + strand at 4182.890 kb on - strand at 4182.996 kb on - strand at 4183.091 kb on + strand, within Psyr_3507 at 4183.091 kb on + strand, within Psyr_3507 at 4183.091 kb on + strand, within Psyr_3507 at 4183.207 kb on - strand, within Psyr_3507 at 4183.286 kb on + strand, within Psyr_3507 at 4183.286 kb on + strand, within Psyr_3507 at 4183.286 kb on + strand, within Psyr_3507 at 4183.460 kb on + strand, within Psyr_3507 at 4183.461 kb on - strand, within Psyr_3507 at 4183.614 kb on + strand at 4183.614 kb on + strand at 4183.670 kb on + strand at 4183.681 kb on + strand at 4183.682 kb on - strand at 4183.682 kb on - strand at 4183.694 kb on - strand at 4183.694 kb on - strand at 4183.720 kb on + strand at 4183.727 kb on - strand at 4183.727 kb on - strand at 4183.855 kb on + strand, within Psyr_3508 at 4183.855 kb on + strand, within Psyr_3508 at 4184.248 kb on + strand, within Psyr_3508 at 4184.255 kb on - strand, within Psyr_3508 at 4184.255 kb on - strand, within Psyr_3508 at 4184.255 kb on - strand, within Psyr_3508 at 4184.284 kb on + strand, within Psyr_3508 at 4184.334 kb on + strand, within Psyr_3508 at 4184.343 kb on - strand, within Psyr_3508 at 4184.464 kb on + strand, within Psyr_3508 at 4184.464 kb on + strand, within Psyr_3508 at 4184.464 kb on + strand, within Psyr_3508 at 4184.465 kb on - strand, within Psyr_3508 at 4184.465 kb on - strand, within Psyr_3508 at 4184.527 kb on + strand, within Psyr_3508 at 4184.527 kb on + strand, within Psyr_3508 at 4184.527 kb on + strand, within Psyr_3508 at 4184.527 kb on + strand, within Psyr_3508 at 4184.527 kb on + strand, within Psyr_3508 at 4184.528 kb on - strand, within Psyr_3508 at 4184.528 kb on - strand, within Psyr_3508 at 4184.528 kb on - strand, within Psyr_3508
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Lupeol 10 mM remove 4,182,200 - -0.7 4,182,218 - Psyr_3506 0.62 +0.7 4,182,502 - Psyr_3506 0.76 +1.3 4,182,560 - Psyr_3506 0.79 +0.1 4,182,560 - Psyr_3506 0.79 -0.4 4,182,641 - Psyr_3506 0.83 -1.2 4,182,646 + Psyr_3506 0.83 +0.1 4,182,646 + Psyr_3506 0.83 +0.9 4,182,667 + Psyr_3506 0.84 -3.5 4,182,667 + Psyr_3506 0.84 +0.2 4,182,667 + Psyr_3506 0.84 +1.8 4,182,667 + Psyr_3506 0.84 +0.3 4,182,667 + Psyr_3506 0.84 -1.2 4,182,667 + Psyr_3506 0.84 -0.7 4,182,667 + Psyr_3506 0.84 +0.3 4,182,667 + Psyr_3506 0.84 +0.8 4,182,667 + Psyr_3506 0.84 +0.8 4,182,668 - Psyr_3506 0.84 -0.2 4,182,668 - Psyr_3506 0.84 -0.4 4,182,668 - Psyr_3506 0.84 -0.4 4,182,668 - Psyr_3506 0.84 -0.9 4,182,668 - Psyr_3506 0.84 -0.5 4,182,668 - Psyr_3506 0.84 +0.0 4,182,668 - Psyr_3506 0.84 +0.3 4,182,668 - Psyr_3506 0.84 -0.4 4,182,668 - Psyr_3506 0.84 -2.1 4,182,668 - Psyr_3506 0.84 +0.0 4,182,889 + -0.2 4,182,890 - -0.4 4,182,996 - -0.7 4,183,091 + Psyr_3507 0.16 -0.2 4,183,091 + Psyr_3507 0.16 +0.8 4,183,091 + Psyr_3507 0.16 -1.9 4,183,207 - Psyr_3507 0.34 +0.8 4,183,286 + Psyr_3507 0.47 +0.8 4,183,286 + Psyr_3507 0.47 +1.9 4,183,286 + Psyr_3507 0.47 +1.3 4,183,460 + Psyr_3507 0.75 -0.7 4,183,461 - Psyr_3507 0.75 -0.1 4,183,614 + +0.2 4,183,614 + +1.2 4,183,670 + +0.4 4,183,681 + +1.3 4,183,682 - +1.0 4,183,682 - +0.5 4,183,694 - +0.1 4,183,694 - +0.8 4,183,720 + -0.1 4,183,727 - +1.0 4,183,727 - -0.1 4,183,855 + Psyr_3508 0.19 +0.4 4,183,855 + Psyr_3508 0.19 +0.4 4,184,248 + Psyr_3508 0.49 -0.7 4,184,255 - Psyr_3508 0.50 +0.5 4,184,255 - Psyr_3508 0.50 +1.2 4,184,255 - Psyr_3508 0.50 -2.7 4,184,284 + Psyr_3508 0.52 -0.2 4,184,334 + Psyr_3508 0.56 +0.3 4,184,343 - Psyr_3508 0.56 -0.9 4,184,464 + Psyr_3508 0.66 -0.2 4,184,464 + Psyr_3508 0.66 -1.3 4,184,464 + Psyr_3508 0.66 -0.4 4,184,465 - Psyr_3508 0.66 -0.7 4,184,465 - Psyr_3508 0.66 -1.0 4,184,527 + Psyr_3508 0.71 -0.3 4,184,527 + Psyr_3508 0.71 +0.4 4,184,527 + Psyr_3508 0.71 +3.0 4,184,527 + Psyr_3508 0.71 -2.0 4,184,527 + Psyr_3508 0.71 +3.2 4,184,528 - Psyr_3508 0.71 -0.7 4,184,528 - Psyr_3508 0.71 -0.9 4,184,528 - Psyr_3508 0.71 -0.2
Or see this region's nucleotide sequence