Experiment: KB with Lupeol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3025 and Psyr_3026 are separated by 106 nucleotides Psyr_3026 and Psyr_3027 are separated by 78 nucleotides Psyr_3027 and Psyr_3028 are separated by 20 nucleotides
Psyr_3025: Psyr_3025 - Major facilitator superfamily, at 3,622,736 to 3,623,965
_3025
Psyr_3026: Psyr_3026 - transcriptional regulator, TetR family, at 3,624,072 to 3,624,617
_3026
Psyr_3027: Psyr_3027 - Protein kinase:Leucine-rich repeat protein, at 3,624,696 to 3,626,000
_3027
Psyr_3028: Psyr_3028 - Protein of unknown function DUF28, at 3,626,021 to 3,626,725
_3028
Position (kb) 3624
3625
3626
3627 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3623.772 kb on + strand, within Psyr_3025 at 3623.772 kb on + strand, within Psyr_3025 at 3623.772 kb on + strand, within Psyr_3025 at 3623.772 kb on + strand, within Psyr_3025 at 3623.772 kb on + strand, within Psyr_3025 at 3623.772 kb on + strand, within Psyr_3025 at 3623.772 kb on + strand, within Psyr_3025 at 3623.772 kb on + strand, within Psyr_3025 at 3623.772 kb on + strand, within Psyr_3025 at 3623.772 kb on + strand, within Psyr_3025 at 3623.773 kb on - strand, within Psyr_3025 at 3623.773 kb on - strand, within Psyr_3025 at 3623.774 kb on + strand, within Psyr_3025 at 3623.774 kb on + strand, within Psyr_3025 at 3623.774 kb on + strand, within Psyr_3025 at 3623.774 kb on + strand, within Psyr_3025 at 3623.774 kb on + strand, within Psyr_3025 at 3623.775 kb on - strand, within Psyr_3025 at 3623.775 kb on - strand, within Psyr_3025 at 3623.775 kb on - strand, within Psyr_3025 at 3623.775 kb on - strand, within Psyr_3025 at 3623.775 kb on - strand, within Psyr_3025 at 3623.775 kb on - strand, within Psyr_3025 at 3623.791 kb on + strand, within Psyr_3025 at 3623.873 kb on + strand at 3623.874 kb on - strand at 3624.224 kb on + strand, within Psyr_3026 at 3624.224 kb on + strand, within Psyr_3026 at 3624.224 kb on + strand, within Psyr_3026 at 3624.224 kb on + strand, within Psyr_3026 at 3624.225 kb on - strand, within Psyr_3026 at 3624.225 kb on - strand, within Psyr_3026 at 3624.349 kb on - strand, within Psyr_3026 at 3624.691 kb on + strand at 3624.691 kb on + strand at 3624.691 kb on + strand at 3624.691 kb on + strand at 3624.692 kb on - strand at 3624.692 kb on - strand at 3624.692 kb on - strand at 3624.692 kb on - strand at 3624.692 kb on - strand at 3624.692 kb on - strand at 3624.715 kb on + strand at 3624.976 kb on + strand, within Psyr_3027 at 3625.398 kb on + strand, within Psyr_3027 at 3625.398 kb on + strand, within Psyr_3027 at 3625.398 kb on + strand, within Psyr_3027 at 3625.399 kb on - strand, within Psyr_3027 at 3625.399 kb on - strand, within Psyr_3027 at 3625.399 kb on - strand, within Psyr_3027 at 3625.399 kb on - strand, within Psyr_3027 at 3625.399 kb on - strand, within Psyr_3027 at 3625.606 kb on - strand, within Psyr_3027 at 3625.714 kb on - strand, within Psyr_3027 at 3625.975 kb on + strand at 3625.976 kb on - strand at 3625.976 kb on - strand at 3625.976 kb on - strand at 3626.040 kb on + strand at 3626.040 kb on + strand at 3626.041 kb on - strand at 3626.041 kb on - strand at 3626.478 kb on + strand, within Psyr_3028 at 3626.478 kb on + strand, within Psyr_3028 at 3626.479 kb on - strand, within Psyr_3028 at 3626.479 kb on - strand, within Psyr_3028 at 3626.668 kb on + strand at 3626.668 kb on + strand at 3626.668 kb on + strand at 3626.668 kb on + strand at 3626.669 kb on - strand at 3626.669 kb on - strand at 3626.669 kb on - strand at 3626.669 kb on - strand at 3626.669 kb on - strand at 3626.699 kb on - strand at 3626.824 kb on - strand at 3626.824 kb on - strand at 3626.847 kb on + strand at 3626.894 kb on - strand at 3626.959 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Lupeol 10 mM remove 3,623,772 + Psyr_3025 0.84 +0.1 3,623,772 + Psyr_3025 0.84 +0.8 3,623,772 + Psyr_3025 0.84 -0.2 3,623,772 + Psyr_3025 0.84 -0.2 3,623,772 + Psyr_3025 0.84 +0.7 3,623,772 + Psyr_3025 0.84 -0.7 3,623,772 + Psyr_3025 0.84 -0.1 3,623,772 + Psyr_3025 0.84 -1.6 3,623,772 + Psyr_3025 0.84 -0.2 3,623,772 + Psyr_3025 0.84 +1.3 3,623,773 - Psyr_3025 0.84 +1.4 3,623,773 - Psyr_3025 0.84 -0.1 3,623,774 + Psyr_3025 0.84 +1.6 3,623,774 + Psyr_3025 0.84 -0.9 3,623,774 + Psyr_3025 0.84 -1.0 3,623,774 + Psyr_3025 0.84 -0.9 3,623,774 + Psyr_3025 0.84 -0.1 3,623,775 - Psyr_3025 0.84 -1.0 3,623,775 - Psyr_3025 0.84 +1.0 3,623,775 - Psyr_3025 0.84 +1.7 3,623,775 - Psyr_3025 0.84 -0.5 3,623,775 - Psyr_3025 0.84 -0.2 3,623,775 - Psyr_3025 0.84 -0.0 3,623,791 + Psyr_3025 0.86 +0.1 3,623,873 + -1.3 3,623,874 - -0.1 3,624,224 + Psyr_3026 0.28 -0.2 3,624,224 + Psyr_3026 0.28 +1.0 3,624,224 + Psyr_3026 0.28 -0.6 3,624,224 + Psyr_3026 0.28 -2.3 3,624,225 - Psyr_3026 0.28 +0.8 3,624,225 - Psyr_3026 0.28 +0.1 3,624,349 - Psyr_3026 0.51 +1.4 3,624,691 + +0.5 3,624,691 + +1.3 3,624,691 + -0.6 3,624,691 + -0.4 3,624,692 - -2.2 3,624,692 - +1.3 3,624,692 - -0.0 3,624,692 - +1.5 3,624,692 - +0.3 3,624,692 - -0.4 3,624,715 + -1.2 3,624,976 + Psyr_3027 0.21 +0.8 3,625,398 + Psyr_3027 0.54 +0.3 3,625,398 + Psyr_3027 0.54 +1.0 3,625,398 + Psyr_3027 0.54 -0.4 3,625,399 - Psyr_3027 0.54 +0.9 3,625,399 - Psyr_3027 0.54 +0.4 3,625,399 - Psyr_3027 0.54 -1.0 3,625,399 - Psyr_3027 0.54 +1.0 3,625,399 - Psyr_3027 0.54 +0.4 3,625,606 - Psyr_3027 0.70 +0.8 3,625,714 - Psyr_3027 0.78 -0.4 3,625,975 + -0.3 3,625,976 - -1.1 3,625,976 - -0.0 3,625,976 - +0.1 3,626,040 + -1.3 3,626,040 + +0.3 3,626,041 - -1.3 3,626,041 - -1.3 3,626,478 + Psyr_3028 0.65 +1.4 3,626,478 + Psyr_3028 0.65 +0.2 3,626,479 - Psyr_3028 0.65 -0.2 3,626,479 - Psyr_3028 0.65 +0.5 3,626,668 + +2.0 3,626,668 + +1.0 3,626,668 + +0.2 3,626,668 + +0.5 3,626,669 - +0.1 3,626,669 - +0.6 3,626,669 - -0.2 3,626,669 - -0.0 3,626,669 - -0.2 3,626,699 - -0.2 3,626,824 - -0.5 3,626,824 - +1.4 3,626,847 + -3.1 3,626,894 - +0.1 3,626,959 - -1.8
Or see this region's nucleotide sequence