Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2923

Experiment: KB with Lupeol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2922 and Psyr_2923 overlap by 11 nucleotidesPsyr_2923 and Psyr_2924 are separated by 109 nucleotides Psyr_2922: Psyr_2922 - Permease for cytosine/purines, uracil, thiamine, allantoin, at 3,510,456 to 3,511,925 _2922 Psyr_2923: Psyr_2923 - Carbohydrate kinase, PfkB, at 3,511,915 to 3,512,841 _2923 Psyr_2924: Psyr_2924 - conserved hypothetical protein, at 3,512,951 to 3,514,246 _2924 Position (kb) 3511 3512 3513Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3511.005 kb on + strand, within Psyr_2922at 3511.005 kb on + strand, within Psyr_2922at 3511.006 kb on - strand, within Psyr_2922at 3511.045 kb on + strand, within Psyr_2922at 3511.045 kb on + strand, within Psyr_2922at 3511.109 kb on + strand, within Psyr_2922at 3511.481 kb on + strand, within Psyr_2922at 3511.509 kb on + strand, within Psyr_2922at 3511.509 kb on + strand, within Psyr_2922at 3511.550 kb on + strand, within Psyr_2922at 3511.551 kb on - strand, within Psyr_2922at 3511.551 kb on - strand, within Psyr_2922at 3511.551 kb on - strand, within Psyr_2922at 3511.551 kb on - strand, within Psyr_2922at 3511.551 kb on - strand, within Psyr_2922at 3511.629 kb on + strand, within Psyr_2922at 3511.629 kb on + strand, within Psyr_2922at 3511.629 kb on + strand, within Psyr_2922at 3511.630 kb on - strand, within Psyr_2922at 3511.630 kb on - strand, within Psyr_2922at 3511.630 kb on - strand, within Psyr_2922at 3511.672 kb on - strand, within Psyr_2922at 3511.860 kb on + strandat 3511.933 kb on + strandat 3512.017 kb on - strand, within Psyr_2923at 3512.239 kb on + strandat 3512.239 kb on + strand, within Psyr_2923at 3512.239 kb on + strand, within Psyr_2923at 3512.239 kb on + strand, within Psyr_2923at 3512.240 kb on - strand, within Psyr_2923at 3512.240 kb on - strand, within Psyr_2923at 3512.240 kb on - strand, within Psyr_2923at 3512.240 kb on - strand, within Psyr_2923at 3512.240 kb on - strand, within Psyr_2923at 3512.240 kb on - strand, within Psyr_2923at 3512.305 kb on + strand, within Psyr_2923at 3512.305 kb on + strand, within Psyr_2923at 3512.305 kb on + strand, within Psyr_2923at 3512.305 kb on + strand, within Psyr_2923at 3512.305 kb on + strand, within Psyr_2923at 3512.305 kb on + strand, within Psyr_2923at 3512.305 kb on + strand, within Psyr_2923at 3512.306 kb on - strand, within Psyr_2923at 3512.306 kb on - strand, within Psyr_2923at 3512.306 kb on - strand, within Psyr_2923at 3512.306 kb on - strand, within Psyr_2923at 3512.309 kb on + strand, within Psyr_2923at 3512.309 kb on + strand, within Psyr_2923at 3512.309 kb on + strand, within Psyr_2923at 3512.309 kb on + strand, within Psyr_2923at 3512.309 kb on + strand, within Psyr_2923at 3512.309 kb on + strand, within Psyr_2923at 3512.310 kb on - strand, within Psyr_2923at 3512.310 kb on - strand, within Psyr_2923at 3512.310 kb on - strand, within Psyr_2923at 3512.310 kb on - strand, within Psyr_2923at 3512.349 kb on + strand, within Psyr_2923at 3512.399 kb on + strand, within Psyr_2923at 3512.431 kb on + strand, within Psyr_2923at 3512.432 kb on - strand, within Psyr_2923at 3512.453 kb on + strand, within Psyr_2923at 3512.471 kb on + strand, within Psyr_2923at 3512.472 kb on - strand, within Psyr_2923at 3512.472 kb on - strand, within Psyr_2923at 3512.472 kb on - strand, within Psyr_2923at 3512.573 kb on + strand, within Psyr_2923at 3512.573 kb on + strand, within Psyr_2923at 3512.574 kb on - strand, within Psyr_2923at 3512.633 kb on + strand, within Psyr_2923at 3512.813 kb on + strandat 3512.813 kb on + strandat 3512.813 kb on + strandat 3512.813 kb on + strandat 3512.813 kb on + strandat 3512.814 kb on - strandat 3512.814 kb on - strandat 3512.814 kb on - strandat 3512.840 kb on - strandat 3512.860 kb on - strandat 3512.876 kb on - strandat 3512.876 kb on - strandat 3512.937 kb on + strandat 3513.044 kb on + strandat 3513.045 kb on - strandat 3513.098 kb on + strand, within Psyr_2924at 3513.098 kb on + strand, within Psyr_2924at 3513.099 kb on - strand, within Psyr_2924at 3513.099 kb on - strand, within Psyr_2924at 3513.249 kb on - strand, within Psyr_2924at 3513.249 kb on - strand, within Psyr_2924at 3513.297 kb on + strand, within Psyr_2924at 3513.297 kb on + strand, within Psyr_2924at 3513.298 kb on - strand, within Psyr_2924at 3513.298 kb on - strand, within Psyr_2924at 3513.380 kb on + strand, within Psyr_2924at 3513.380 kb on + strand, within Psyr_2924at 3513.381 kb on - strand, within Psyr_2924at 3513.381 kb on - strand, within Psyr_2924at 3513.381 kb on - strand, within Psyr_2924at 3513.392 kb on - strand, within Psyr_2924at 3513.392 kb on - strand, within Psyr_2924at 3513.423 kb on + strand, within Psyr_2924at 3513.424 kb on - strand, within Psyr_2924at 3513.424 kb on - strand, within Psyr_2924at 3513.447 kb on + strand, within Psyr_2924at 3513.448 kb on - strand, within Psyr_2924at 3513.448 kb on - strand, within Psyr_2924at 3513.486 kb on - strand, within Psyr_2924at 3513.487 kb on + strand, within Psyr_2924at 3513.487 kb on + strand, within Psyr_2924at 3513.487 kb on + strand, within Psyr_2924at 3513.487 kb on + strand, within Psyr_2924at 3513.487 kb on + strand, within Psyr_2924at 3513.487 kb on + strand, within Psyr_2924at 3513.488 kb on - strand, within Psyr_2924at 3513.488 kb on - strand, within Psyr_2924at 3513.488 kb on - strandat 3513.488 kb on - strand, within Psyr_2924at 3513.488 kb on - strand, within Psyr_2924at 3513.488 kb on - strand, within Psyr_2924at 3513.488 kb on - strand, within Psyr_2924at 3513.492 kb on - strand, within Psyr_2924at 3513.492 kb on - strand, within Psyr_2924at 3513.492 kb on - strand, within Psyr_2924at 3513.492 kb on - strand, within Psyr_2924at 3513.551 kb on + strand, within Psyr_2924at 3513.551 kb on + strand, within Psyr_2924at 3513.551 kb on + strand, within Psyr_2924at 3513.552 kb on - strand, within Psyr_2924at 3513.552 kb on - strand, within Psyr_2924at 3513.552 kb on - strand, within Psyr_2924at 3513.552 kb on - strand, within Psyr_2924at 3513.555 kb on + strand, within Psyr_2924at 3513.556 kb on - strand, within Psyr_2924at 3513.556 kb on - strand, within Psyr_2924at 3513.556 kb on - strand, within Psyr_2924at 3513.556 kb on - strand, within Psyr_2924at 3513.603 kb on + strand, within Psyr_2924at 3513.603 kb on + strand, within Psyr_2924at 3513.603 kb on + strand, within Psyr_2924at 3513.682 kb on + strand, within Psyr_2924at 3513.806 kb on + strand, within Psyr_2924at 3513.807 kb on - strand, within Psyr_2924at 3513.807 kb on - strand, within Psyr_2924at 3513.807 kb on - strand, within Psyr_2924at 3513.807 kb on - strand, within Psyr_2924

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Lupeol 10 mM
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3,511,005 + Psyr_2922 0.37 -1.3
3,511,005 + Psyr_2922 0.37 -0.4
3,511,006 - Psyr_2922 0.37 +0.6
3,511,045 + Psyr_2922 0.40 -1.3
3,511,045 + Psyr_2922 0.40 +1.1
3,511,109 + Psyr_2922 0.44 -0.0
3,511,481 + Psyr_2922 0.70 +0.4
3,511,509 + Psyr_2922 0.72 -0.8
3,511,509 + Psyr_2922 0.72 -0.2
3,511,550 + Psyr_2922 0.74 +1.5
3,511,551 - Psyr_2922 0.74 +0.3
3,511,551 - Psyr_2922 0.74 +1.8
3,511,551 - Psyr_2922 0.74 -0.2
3,511,551 - Psyr_2922 0.74 +1.3
3,511,551 - Psyr_2922 0.74 +0.8
3,511,629 + Psyr_2922 0.80 +0.7
3,511,629 + Psyr_2922 0.80 -1.8
3,511,629 + Psyr_2922 0.80 +0.2
3,511,630 - Psyr_2922 0.80 -0.1
3,511,630 - Psyr_2922 0.80 +0.6
3,511,630 - Psyr_2922 0.80 +4.4
3,511,672 - Psyr_2922 0.83 -0.1
3,511,860 + +1.3
3,511,933 + +1.1
3,512,017 - Psyr_2923 0.11 +0.0
3,512,239 + +0.7
3,512,239 + Psyr_2923 0.35 +1.1
3,512,239 + Psyr_2923 0.35 -3.3
3,512,239 + Psyr_2923 0.35 +0.7
3,512,240 - Psyr_2923 0.35 +0.2
3,512,240 - Psyr_2923 0.35 +0.4
3,512,240 - Psyr_2923 0.35 +0.4
3,512,240 - Psyr_2923 0.35 +1.6
3,512,240 - Psyr_2923 0.35 +1.1
3,512,240 - Psyr_2923 0.35 +1.1
3,512,305 + Psyr_2923 0.42 +0.6
3,512,305 + Psyr_2923 0.42 +0.3
3,512,305 + Psyr_2923 0.42 +0.6
3,512,305 + Psyr_2923 0.42 -0.2
3,512,305 + Psyr_2923 0.42 +1.7
3,512,305 + Psyr_2923 0.42 -0.8
3,512,305 + Psyr_2923 0.42 +2.7
3,512,306 - Psyr_2923 0.42 +2.4
3,512,306 - Psyr_2923 0.42 +0.2
3,512,306 - Psyr_2923 0.42 +1.1
3,512,306 - Psyr_2923 0.42 -0.9
3,512,309 + Psyr_2923 0.43 +0.1
3,512,309 + Psyr_2923 0.43 -0.9
3,512,309 + Psyr_2923 0.43 +0.7
3,512,309 + Psyr_2923 0.43 -0.5
3,512,309 + Psyr_2923 0.43 -1.0
3,512,309 + Psyr_2923 0.43 +3.1
3,512,310 - Psyr_2923 0.43 -1.0
3,512,310 - Psyr_2923 0.43 -1.3
3,512,310 - Psyr_2923 0.43 +0.1
3,512,310 - Psyr_2923 0.43 +1.7
3,512,349 + Psyr_2923 0.47 +0.4
3,512,399 + Psyr_2923 0.52 -1.3
3,512,431 + Psyr_2923 0.56 +1.0
3,512,432 - Psyr_2923 0.56 +0.2
3,512,453 + Psyr_2923 0.58 +1.1
3,512,471 + Psyr_2923 0.60 +0.5
3,512,472 - Psyr_2923 0.60 +0.7
3,512,472 - Psyr_2923 0.60 -0.3
3,512,472 - Psyr_2923 0.60 +0.5
3,512,573 + Psyr_2923 0.71 +0.3
3,512,573 + Psyr_2923 0.71 +1.1
3,512,574 - Psyr_2923 0.71 +0.2
3,512,633 + Psyr_2923 0.77 +0.1
3,512,813 + +2.3
3,512,813 + -2.8
3,512,813 + +1.1
3,512,813 + -0.0
3,512,813 + +0.3
3,512,814 - +0.1
3,512,814 - -2.0
3,512,814 - -1.3
3,512,840 - +0.5
3,512,860 - -0.5
3,512,876 - -0.1
3,512,876 - -1.4
3,512,937 + -1.9
3,513,044 + -1.4
3,513,045 - -0.9
3,513,098 + Psyr_2924 0.11 -0.3
3,513,098 + Psyr_2924 0.11 -0.7
3,513,099 - Psyr_2924 0.11 +1.1
3,513,099 - Psyr_2924 0.11 -0.2
3,513,249 - Psyr_2924 0.23 +0.1
3,513,249 - Psyr_2924 0.23 +1.6
3,513,297 + Psyr_2924 0.27 +1.5
3,513,297 + Psyr_2924 0.27 +1.4
3,513,298 - Psyr_2924 0.27 -1.5
3,513,298 - Psyr_2924 0.27 +0.3
3,513,380 + Psyr_2924 0.33 +0.3
3,513,380 + Psyr_2924 0.33 -0.9
3,513,381 - Psyr_2924 0.33 +0.1
3,513,381 - Psyr_2924 0.33 +0.3
3,513,381 - Psyr_2924 0.33 +1.1
3,513,392 - Psyr_2924 0.34 +0.5
3,513,392 - Psyr_2924 0.34 +0.2
3,513,423 + Psyr_2924 0.36 -0.5
3,513,424 - Psyr_2924 0.36 +3.1
3,513,424 - Psyr_2924 0.36 +1.1
3,513,447 + Psyr_2924 0.38 +1.1
3,513,448 - Psyr_2924 0.38 -0.8
3,513,448 - Psyr_2924 0.38 -1.7
3,513,486 - Psyr_2924 0.41 -0.9
3,513,487 + Psyr_2924 0.41 -0.4
3,513,487 + Psyr_2924 0.41 -0.2
3,513,487 + Psyr_2924 0.41 +0.1
3,513,487 + Psyr_2924 0.41 -1.7
3,513,487 + Psyr_2924 0.41 -0.6
3,513,487 + Psyr_2924 0.41 +0.3
3,513,488 - Psyr_2924 0.41 +0.7
3,513,488 - Psyr_2924 0.41 -0.6
3,513,488 - -1.5
3,513,488 - Psyr_2924 0.41 +1.1
3,513,488 - Psyr_2924 0.41 -0.2
3,513,488 - Psyr_2924 0.41 +0.8
3,513,488 - Psyr_2924 0.41 -1.4
3,513,492 - Psyr_2924 0.42 +2.8
3,513,492 - Psyr_2924 0.42 +1.9
3,513,492 - Psyr_2924 0.42 -0.1
3,513,492 - Psyr_2924 0.42 +0.1
3,513,551 + Psyr_2924 0.46 +1.1
3,513,551 + Psyr_2924 0.46 +1.8
3,513,551 + Psyr_2924 0.46 +0.1
3,513,552 - Psyr_2924 0.46 +0.5
3,513,552 - Psyr_2924 0.46 -0.9
3,513,552 - Psyr_2924 0.46 -0.9
3,513,552 - Psyr_2924 0.46 -3.3
3,513,555 + Psyr_2924 0.47 -1.4
3,513,556 - Psyr_2924 0.47 +0.4
3,513,556 - Psyr_2924 0.47 +0.5
3,513,556 - Psyr_2924 0.47 -1.2
3,513,556 - Psyr_2924 0.47 -0.4
3,513,603 + Psyr_2924 0.50 -0.9
3,513,603 + Psyr_2924 0.50 +0.6
3,513,603 + Psyr_2924 0.50 +0.1
3,513,682 + Psyr_2924 0.56 +0.7
3,513,806 + Psyr_2924 0.66 +1.1
3,513,807 - Psyr_2924 0.66 -2.2
3,513,807 - Psyr_2924 0.66 +1.4
3,513,807 - Psyr_2924 0.66 +0.3
3,513,807 - Psyr_2924 0.66 +1.3

Or see this region's nucleotide sequence