Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2647

Experiment: KB with Lupeol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2646 and Psyr_2647 are separated by 88 nucleotidesPsyr_2647 and Psyr_2648 overlap by 16 nucleotides Psyr_2646: Psyr_2646 - Radical SAM, at 3,216,092 to 3,218,263 _2646 Psyr_2647: Psyr_2647 - hypothetical protein, at 3,218,352 to 3,219,233 _2647 Psyr_2648: Psyr_2648 - hypothetical protein, at 3,219,218 to 3,220,411 _2648 Position (kb) 3218 3219 3220Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3217.353 kb on + strand, within Psyr_2646at 3217.353 kb on + strand, within Psyr_2646at 3217.353 kb on + strand, within Psyr_2646at 3217.353 kb on + strand, within Psyr_2646at 3217.353 kb on + strand, within Psyr_2646at 3217.353 kb on + strand, within Psyr_2646at 3217.353 kb on + strand, within Psyr_2646at 3217.353 kb on + strand, within Psyr_2646at 3217.354 kb on - strand, within Psyr_2646at 3217.354 kb on - strand, within Psyr_2646at 3217.354 kb on - strand, within Psyr_2646at 3217.354 kb on - strand, within Psyr_2646at 3217.354 kb on - strandat 3217.354 kb on - strand, within Psyr_2646at 3217.354 kb on - strand, within Psyr_2646at 3217.354 kb on - strand, within Psyr_2646at 3217.354 kb on - strand, within Psyr_2646at 3217.354 kb on - strand, within Psyr_2646at 3217.414 kb on - strand, within Psyr_2646at 3217.459 kb on - strand, within Psyr_2646at 3217.469 kb on - strand, within Psyr_2646at 3217.524 kb on - strand, within Psyr_2646at 3217.524 kb on - strand, within Psyr_2646at 3217.689 kb on + strand, within Psyr_2646at 3217.820 kb on + strand, within Psyr_2646at 3217.820 kb on + strand, within Psyr_2646at 3217.820 kb on + strand, within Psyr_2646at 3217.820 kb on + strand, within Psyr_2646at 3217.820 kb on + strand, within Psyr_2646at 3217.820 kb on + strand, within Psyr_2646at 3217.821 kb on - strand, within Psyr_2646at 3217.821 kb on - strand, within Psyr_2646at 3217.821 kb on - strand, within Psyr_2646at 3217.821 kb on - strand, within Psyr_2646at 3217.821 kb on - strand, within Psyr_2646at 3217.821 kb on - strand, within Psyr_2646at 3217.821 kb on - strand, within Psyr_2646at 3217.821 kb on - strand, within Psyr_2646at 3217.821 kb on - strand, within Psyr_2646at 3217.821 kb on - strand, within Psyr_2646at 3217.859 kb on + strand, within Psyr_2646at 3217.907 kb on + strand, within Psyr_2646at 3217.908 kb on - strand, within Psyr_2646at 3217.908 kb on - strand, within Psyr_2646at 3217.935 kb on + strand, within Psyr_2646at 3217.936 kb on - strand, within Psyr_2646at 3217.945 kb on + strand, within Psyr_2646at 3217.945 kb on + strand, within Psyr_2646at 3217.946 kb on - strand, within Psyr_2646at 3218.295 kb on + strandat 3218.296 kb on - strandat 3218.327 kb on + strandat 3218.327 kb on + strandat 3218.328 kb on - strandat 3218.328 kb on - strandat 3218.328 kb on - strandat 3218.328 kb on - strandat 3218.379 kb on + strandat 3218.457 kb on - strand, within Psyr_2647at 3218.457 kb on - strand, within Psyr_2647at 3218.457 kb on - strand, within Psyr_2647at 3218.492 kb on + strand, within Psyr_2647at 3218.492 kb on + strand, within Psyr_2647at 3218.493 kb on - strand, within Psyr_2647at 3218.549 kb on + strand, within Psyr_2647at 3218.550 kb on - strand, within Psyr_2647at 3218.577 kb on - strand, within Psyr_2647at 3218.577 kb on - strand, within Psyr_2647at 3218.790 kb on - strand, within Psyr_2647at 3218.806 kb on + strand, within Psyr_2647at 3218.806 kb on + strand, within Psyr_2647at 3218.806 kb on + strand, within Psyr_2647at 3218.806 kb on + strand, within Psyr_2647at 3218.825 kb on + strand, within Psyr_2647at 3218.825 kb on + strand, within Psyr_2647at 3218.826 kb on - strand, within Psyr_2647at 3218.826 kb on - strand, within Psyr_2647at 3218.826 kb on - strand, within Psyr_2647at 3218.826 kb on - strand, within Psyr_2647at 3218.909 kb on + strand, within Psyr_2647at 3218.910 kb on - strand, within Psyr_2647at 3218.985 kb on + strandat 3218.985 kb on + strand, within Psyr_2647at 3218.986 kb on - strand, within Psyr_2647at 3218.986 kb on - strand, within Psyr_2647at 3218.986 kb on - strand, within Psyr_2647at 3219.012 kb on - strand, within Psyr_2647at 3219.041 kb on - strand, within Psyr_2647at 3219.095 kb on - strand, within Psyr_2647at 3219.235 kb on + strandat 3219.272 kb on - strandat 3219.272 kb on - strandat 3219.425 kb on + strand, within Psyr_2648at 3219.425 kb on + strand, within Psyr_2648at 3219.425 kb on + strand, within Psyr_2648at 3219.425 kb on + strand, within Psyr_2648at 3219.425 kb on + strand, within Psyr_2648at 3219.426 kb on - strand, within Psyr_2648at 3219.426 kb on - strandat 3219.426 kb on - strand, within Psyr_2648at 3219.426 kb on - strand, within Psyr_2648at 3219.430 kb on + strand, within Psyr_2648at 3219.530 kb on + strand, within Psyr_2648at 3219.531 kb on - strand, within Psyr_2648at 3219.531 kb on - strand, within Psyr_2648at 3219.552 kb on - strand, within Psyr_2648at 3219.552 kb on - strand, within Psyr_2648at 3219.552 kb on - strand, within Psyr_2648at 3219.563 kb on + strand, within Psyr_2648at 3219.563 kb on + strand, within Psyr_2648at 3219.564 kb on - strand, within Psyr_2648at 3219.564 kb on - strand, within Psyr_2648at 3219.564 kb on - strand, within Psyr_2648at 3219.577 kb on + strand, within Psyr_2648at 3219.577 kb on + strand, within Psyr_2648at 3219.577 kb on + strand, within Psyr_2648at 3219.578 kb on - strand, within Psyr_2648at 3219.578 kb on - strand, within Psyr_2648at 3219.578 kb on - strand, within Psyr_2648at 3219.578 kb on - strand, within Psyr_2648at 3219.625 kb on - strand, within Psyr_2648at 3219.674 kb on - strand, within Psyr_2648at 3219.763 kb on + strand, within Psyr_2648at 3219.764 kb on - strand, within Psyr_2648at 3219.764 kb on - strand, within Psyr_2648at 3219.766 kb on + strand, within Psyr_2648at 3219.767 kb on - strand, within Psyr_2648at 3219.767 kb on - strand, within Psyr_2648at 3219.767 kb on - strand, within Psyr_2648at 3219.767 kb on - strand, within Psyr_2648at 3219.861 kb on + strand, within Psyr_2648at 3219.861 kb on + strand, within Psyr_2648at 3219.861 kb on + strand, within Psyr_2648at 3219.862 kb on - strand, within Psyr_2648at 3219.862 kb on - strand, within Psyr_2648at 3219.862 kb on - strand, within Psyr_2648at 3219.862 kb on - strand, within Psyr_2648at 3219.862 kb on - strand, within Psyr_2648at 3219.862 kb on - strand, within Psyr_2648at 3219.865 kb on + strand, within Psyr_2648at 3219.865 kb on + strand, within Psyr_2648at 3219.865 kb on + strand, within Psyr_2648at 3219.865 kb on + strand, within Psyr_2648at 3219.866 kb on - strand, within Psyr_2648at 3219.866 kb on - strand, within Psyr_2648at 3219.874 kb on + strand, within Psyr_2648at 3219.888 kb on - strand, within Psyr_2648at 3219.888 kb on - strand, within Psyr_2648at 3219.936 kb on + strand, within Psyr_2648at 3219.936 kb on + strand, within Psyr_2648at 3219.936 kb on + strand, within Psyr_2648at 3219.936 kb on + strand, within Psyr_2648at 3219.937 kb on - strand, within Psyr_2648at 3219.937 kb on - strand, within Psyr_2648at 3219.945 kb on + strand, within Psyr_2648at 3219.945 kb on + strand, within Psyr_2648at 3219.946 kb on - strand, within Psyr_2648at 3219.970 kb on + strand, within Psyr_2648at 3219.970 kb on + strand, within Psyr_2648at 3219.987 kb on - strand, within Psyr_2648at 3219.987 kb on - strand, within Psyr_2648at 3220.020 kb on + strand, within Psyr_2648at 3220.021 kb on - strand, within Psyr_2648at 3220.035 kb on - strand, within Psyr_2648at 3220.035 kb on - strand, within Psyr_2648at 3220.047 kb on + strand, within Psyr_2648at 3220.047 kb on + strand, within Psyr_2648at 3220.048 kb on - strand, within Psyr_2648at 3220.121 kb on + strand, within Psyr_2648at 3220.121 kb on + strand, within Psyr_2648at 3220.121 kb on + strand, within Psyr_2648at 3220.122 kb on - strand, within Psyr_2648at 3220.152 kb on - strand, within Psyr_2648at 3220.152 kb on - strand, within Psyr_2648

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Lupeol 10 mM
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3,217,353 + Psyr_2646 0.58 -0.6
3,217,353 + Psyr_2646 0.58 -0.1
3,217,353 + Psyr_2646 0.58 +0.5
3,217,353 + Psyr_2646 0.58 -0.6
3,217,353 + Psyr_2646 0.58 +0.4
3,217,353 + Psyr_2646 0.58 +1.2
3,217,353 + Psyr_2646 0.58 +0.7
3,217,353 + Psyr_2646 0.58 +0.3
3,217,354 - Psyr_2646 0.58 -1.1
3,217,354 - Psyr_2646 0.58 -1.0
3,217,354 - Psyr_2646 0.58 +0.5
3,217,354 - Psyr_2646 0.58 +1.6
3,217,354 - -0.4
3,217,354 - Psyr_2646 0.58 -0.3
3,217,354 - Psyr_2646 0.58 -0.4
3,217,354 - Psyr_2646 0.58 +0.9
3,217,354 - Psyr_2646 0.58 -0.8
3,217,354 - Psyr_2646 0.58 +1.2
3,217,414 - Psyr_2646 0.61 +1.2
3,217,459 - Psyr_2646 0.63 -0.1
3,217,469 - Psyr_2646 0.63 -0.1
3,217,524 - Psyr_2646 0.66 -1.4
3,217,524 - Psyr_2646 0.66 -0.0
3,217,689 + Psyr_2646 0.74 +2.4
3,217,820 + Psyr_2646 0.80 +1.0
3,217,820 + Psyr_2646 0.80 -0.4
3,217,820 + Psyr_2646 0.80 +0.2
3,217,820 + Psyr_2646 0.80 -0.1
3,217,820 + Psyr_2646 0.80 +0.1
3,217,820 + Psyr_2646 0.80 +0.5
3,217,821 - Psyr_2646 0.80 +0.4
3,217,821 - Psyr_2646 0.80 +1.9
3,217,821 - Psyr_2646 0.80 +0.8
3,217,821 - Psyr_2646 0.80 +0.4
3,217,821 - Psyr_2646 0.80 +0.3
3,217,821 - Psyr_2646 0.80 -2.2
3,217,821 - Psyr_2646 0.80 +0.1
3,217,821 - Psyr_2646 0.80 -0.3
3,217,821 - Psyr_2646 0.80 +0.9
3,217,821 - Psyr_2646 0.80 +0.4
3,217,859 + Psyr_2646 0.81 +0.3
3,217,907 + Psyr_2646 0.84 +1.3
3,217,908 - Psyr_2646 0.84 -1.1
3,217,908 - Psyr_2646 0.84 +2.0
3,217,935 + Psyr_2646 0.85 +0.9
3,217,936 - Psyr_2646 0.85 -1.9
3,217,945 + Psyr_2646 0.85 +0.7
3,217,945 + Psyr_2646 0.85 -0.2
3,217,946 - Psyr_2646 0.85 +3.0
3,218,295 + -0.3
3,218,296 - +0.6
3,218,327 + -0.6
3,218,327 + +2.4
3,218,328 - +0.2
3,218,328 - -0.2
3,218,328 - -1.4
3,218,328 - +0.3
3,218,379 + +0.7
3,218,457 - Psyr_2647 0.12 +0.5
3,218,457 - Psyr_2647 0.12 +2.4
3,218,457 - Psyr_2647 0.12 +0.7
3,218,492 + Psyr_2647 0.16 +2.5
3,218,492 + Psyr_2647 0.16 +0.6
3,218,493 - Psyr_2647 0.16 -0.8
3,218,549 + Psyr_2647 0.22 +0.7
3,218,550 - Psyr_2647 0.22 +0.4
3,218,577 - Psyr_2647 0.26 -1.0
3,218,577 - Psyr_2647 0.26 +1.5
3,218,790 - Psyr_2647 0.50 +2.0
3,218,806 + Psyr_2647 0.51 +1.1
3,218,806 + Psyr_2647 0.51 +1.3
3,218,806 + Psyr_2647 0.51 +2.4
3,218,806 + Psyr_2647 0.51 +1.4
3,218,825 + Psyr_2647 0.54 +0.0
3,218,825 + Psyr_2647 0.54 +1.5
3,218,826 - Psyr_2647 0.54 +0.1
3,218,826 - Psyr_2647 0.54 +0.2
3,218,826 - Psyr_2647 0.54 +0.8
3,218,826 - Psyr_2647 0.54 +3.1
3,218,909 + Psyr_2647 0.63 +1.1
3,218,910 - Psyr_2647 0.63 +1.1
3,218,985 + -1.2
3,218,985 + Psyr_2647 0.72 +1.8
3,218,986 - Psyr_2647 0.72 -2.6
3,218,986 - Psyr_2647 0.72 -1.7
3,218,986 - Psyr_2647 0.72 +0.7
3,219,012 - Psyr_2647 0.75 +1.4
3,219,041 - Psyr_2647 0.78 -0.6
3,219,095 - Psyr_2647 0.84 +1.3
3,219,235 + -0.0
3,219,272 - +0.8
3,219,272 - -2.1
3,219,425 + Psyr_2648 0.17 +0.1
3,219,425 + Psyr_2648 0.17 +0.3
3,219,425 + Psyr_2648 0.17 +1.0
3,219,425 + Psyr_2648 0.17 +3.0
3,219,425 + Psyr_2648 0.17 -0.3
3,219,426 - Psyr_2648 0.17 -0.3
3,219,426 - +0.6
3,219,426 - Psyr_2648 0.17 +0.1
3,219,426 - Psyr_2648 0.17 -2.6
3,219,430 + Psyr_2648 0.18 +0.2
3,219,530 + Psyr_2648 0.26 +1.0
3,219,531 - Psyr_2648 0.26 -1.6
3,219,531 - Psyr_2648 0.26 +0.4
3,219,552 - Psyr_2648 0.28 -0.7
3,219,552 - Psyr_2648 0.28 -1.3
3,219,552 - Psyr_2648 0.28 +0.3
3,219,563 + Psyr_2648 0.29 +0.4
3,219,563 + Psyr_2648 0.29 -0.4
3,219,564 - Psyr_2648 0.29 +0.0
3,219,564 - Psyr_2648 0.29 -0.2
3,219,564 - Psyr_2648 0.29 +0.0
3,219,577 + Psyr_2648 0.30 -0.2
3,219,577 + Psyr_2648 0.30 +0.1
3,219,577 + Psyr_2648 0.30 +1.0
3,219,578 - Psyr_2648 0.30 +0.3
3,219,578 - Psyr_2648 0.30 -0.3
3,219,578 - Psyr_2648 0.30 +4.0
3,219,578 - Psyr_2648 0.30 +0.4
3,219,625 - Psyr_2648 0.34 -0.4
3,219,674 - Psyr_2648 0.38 +0.3
3,219,763 + Psyr_2648 0.46 -0.4
3,219,764 - Psyr_2648 0.46 +3.0
3,219,764 - Psyr_2648 0.46 -1.4
3,219,766 + Psyr_2648 0.46 +0.2
3,219,767 - Psyr_2648 0.46 -0.6
3,219,767 - Psyr_2648 0.46 +1.3
3,219,767 - Psyr_2648 0.46 +1.6
3,219,767 - Psyr_2648 0.46 -0.3
3,219,861 + Psyr_2648 0.54 -0.5
3,219,861 + Psyr_2648 0.54 +0.0
3,219,861 + Psyr_2648 0.54 -0.1
3,219,862 - Psyr_2648 0.54 -1.0
3,219,862 - Psyr_2648 0.54 -0.0
3,219,862 - Psyr_2648 0.54 -0.1
3,219,862 - Psyr_2648 0.54 -0.9
3,219,862 - Psyr_2648 0.54 +0.6
3,219,862 - Psyr_2648 0.54 -0.2
3,219,865 + Psyr_2648 0.54 +0.4
3,219,865 + Psyr_2648 0.54 -0.0
3,219,865 + Psyr_2648 0.54 +1.7
3,219,865 + Psyr_2648 0.54 -1.2
3,219,866 - Psyr_2648 0.54 +0.1
3,219,866 - Psyr_2648 0.54 -0.0
3,219,874 + Psyr_2648 0.55 -2.0
3,219,888 - Psyr_2648 0.56 -0.4
3,219,888 - Psyr_2648 0.56 +1.7
3,219,936 + Psyr_2648 0.60 +0.3
3,219,936 + Psyr_2648 0.60 +4.1
3,219,936 + Psyr_2648 0.60 -1.0
3,219,936 + Psyr_2648 0.60 +0.4
3,219,937 - Psyr_2648 0.60 -0.0
3,219,937 - Psyr_2648 0.60 +2.1
3,219,945 + Psyr_2648 0.61 +0.8
3,219,945 + Psyr_2648 0.61 +0.0
3,219,946 - Psyr_2648 0.61 +2.1
3,219,970 + Psyr_2648 0.63 +1.8
3,219,970 + Psyr_2648 0.63 -0.4
3,219,987 - Psyr_2648 0.64 -2.6
3,219,987 - Psyr_2648 0.64 -0.4
3,220,020 + Psyr_2648 0.67 -0.6
3,220,021 - Psyr_2648 0.67 +0.1
3,220,035 - Psyr_2648 0.68 +0.1
3,220,035 - Psyr_2648 0.68 -0.7
3,220,047 + Psyr_2648 0.69 -1.2
3,220,047 + Psyr_2648 0.69 +0.7
3,220,048 - Psyr_2648 0.70 +0.9
3,220,121 + Psyr_2648 0.76 +0.2
3,220,121 + Psyr_2648 0.76 +0.5
3,220,121 + Psyr_2648 0.76 +0.2
3,220,122 - Psyr_2648 0.76 -0.3
3,220,152 - Psyr_2648 0.78 -0.2
3,220,152 - Psyr_2648 0.78 -0.6

Or see this region's nucleotide sequence