Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1497

Experiment: KB with Lupeol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1495 and Psyr_1496 are separated by 2 nucleotidesPsyr_1496 and Psyr_1497 are separated by 55 nucleotidesPsyr_1497 and Psyr_1498 overlap by 4 nucleotides Psyr_1495: Psyr_1495 - Copper resistance protein CopC, at 1,684,348 to 1,684,728 _1495 Psyr_1496: Psyr_1496 - Copper resistance D, at 1,684,731 to 1,685,663 _1496 Psyr_1497: Psyr_1497 - Heavy metal response regulator, at 1,685,719 to 1,686,405 _1497 Psyr_1498: Psyr_1498 - Heavy metal sensor kinase, at 1,686,402 to 1,687,781 _1498 Position (kb) 1685 1686 1687Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1684.726 kb on + strandat 1684.726 kb on + strandat 1684.727 kb on - strandat 1684.727 kb on - strandat 1684.727 kb on - strandat 1684.727 kb on - strandat 1684.727 kb on - strandat 1684.727 kb on - strandat 1684.727 kb on - strandat 1684.770 kb on + strandat 1684.770 kb on + strandat 1684.771 kb on - strandat 1684.771 kb on - strandat 1684.771 kb on - strandat 1684.771 kb on - strandat 1684.815 kb on + strandat 1684.823 kb on - strandat 1685.027 kb on + strand, within Psyr_1496at 1685.081 kb on + strand, within Psyr_1496at 1685.081 kb on + strand, within Psyr_1496at 1685.081 kb on + strand, within Psyr_1496at 1685.081 kb on + strand, within Psyr_1496at 1685.082 kb on - strand, within Psyr_1496at 1685.082 kb on - strand, within Psyr_1496at 1685.082 kb on - strand, within Psyr_1496at 1685.111 kb on - strand, within Psyr_1496at 1685.111 kb on - strand, within Psyr_1496at 1685.260 kb on + strand, within Psyr_1496at 1685.261 kb on - strand, within Psyr_1496at 1685.284 kb on + strand, within Psyr_1496at 1685.284 kb on + strand, within Psyr_1496at 1685.285 kb on - strand, within Psyr_1496at 1685.354 kb on - strand, within Psyr_1496at 1685.356 kb on + strand, within Psyr_1496at 1685.356 kb on + strand, within Psyr_1496at 1685.356 kb on + strand, within Psyr_1496at 1685.356 kb on + strand, within Psyr_1496at 1685.356 kb on + strand, within Psyr_1496at 1685.356 kb on + strand, within Psyr_1496at 1685.356 kb on + strand, within Psyr_1496at 1685.356 kb on + strand, within Psyr_1496at 1685.356 kb on + strand, within Psyr_1496at 1685.356 kb on + strand, within Psyr_1496at 1685.357 kb on - strand, within Psyr_1496at 1685.357 kb on - strand, within Psyr_1496at 1685.357 kb on - strand, within Psyr_1496at 1685.357 kb on - strand, within Psyr_1496at 1685.357 kb on - strand, within Psyr_1496at 1685.357 kb on - strand, within Psyr_1496at 1685.357 kb on - strand, within Psyr_1496at 1685.357 kb on - strand, within Psyr_1496at 1685.379 kb on + strand, within Psyr_1496at 1685.379 kb on + strand, within Psyr_1496at 1685.379 kb on + strand, within Psyr_1496at 1685.379 kb on + strand, within Psyr_1496at 1685.379 kb on + strand, within Psyr_1496at 1685.379 kb on + strand, within Psyr_1496at 1685.379 kb on + strand, within Psyr_1496at 1685.379 kb on + strand, within Psyr_1496at 1685.380 kb on - strand, within Psyr_1496at 1685.380 kb on - strand, within Psyr_1496at 1685.380 kb on - strand, within Psyr_1496at 1685.380 kb on - strand, within Psyr_1496at 1685.380 kb on - strand, within Psyr_1496at 1685.380 kb on - strand, within Psyr_1496at 1685.380 kb on - strand, within Psyr_1496at 1685.380 kb on - strand, within Psyr_1496at 1685.542 kb on - strand, within Psyr_1496at 1685.568 kb on + strand, within Psyr_1496at 1685.568 kb on + strand, within Psyr_1496at 1685.570 kb on + strandat 1685.570 kb on + strandat 1685.570 kb on + strandat 1685.570 kb on + strandat 1685.570 kb on + strandat 1685.570 kb on + strandat 1685.571 kb on - strandat 1685.571 kb on - strandat 1685.571 kb on - strandat 1685.748 kb on + strandat 1685.749 kb on - strandat 1685.761 kb on + strandat 1685.761 kb on + strandat 1685.762 kb on - strandat 1685.851 kb on + strand, within Psyr_1497at 1685.851 kb on + strand, within Psyr_1497at 1685.852 kb on - strand, within Psyr_1497at 1686.010 kb on + strand, within Psyr_1497at 1686.010 kb on + strand, within Psyr_1497at 1686.063 kb on - strand, within Psyr_1497at 1686.099 kb on + strand, within Psyr_1497at 1686.099 kb on + strand, within Psyr_1497at 1686.099 kb on + strand, within Psyr_1497at 1686.099 kb on + strand, within Psyr_1497at 1686.100 kb on - strand, within Psyr_1497at 1686.100 kb on - strand, within Psyr_1497at 1686.100 kb on - strand, within Psyr_1497at 1686.100 kb on - strand, within Psyr_1497at 1686.245 kb on + strand, within Psyr_1497at 1686.246 kb on - strand, within Psyr_1497at 1686.357 kb on + strandat 1686.357 kb on + strandat 1686.357 kb on + strandat 1686.358 kb on - strandat 1686.358 kb on - strandat 1686.358 kb on - strandat 1686.376 kb on + strandat 1686.377 kb on - strandat 1686.377 kb on - strandat 1686.377 kb on - strandat 1686.377 kb on - strandat 1686.383 kb on + strandat 1686.383 kb on + strandat 1686.430 kb on + strandat 1686.430 kb on + strandat 1686.649 kb on + strand, within Psyr_1498at 1686.650 kb on - strand, within Psyr_1498at 1686.851 kb on + strand, within Psyr_1498at 1686.851 kb on + strand, within Psyr_1498at 1686.852 kb on - strand, within Psyr_1498at 1686.852 kb on - strand, within Psyr_1498at 1686.852 kb on - strand, within Psyr_1498at 1686.852 kb on - strand, within Psyr_1498at 1686.852 kb on - strand, within Psyr_1498at 1686.895 kb on + strand, within Psyr_1498at 1686.895 kb on + strand, within Psyr_1498at 1686.895 kb on + strand, within Psyr_1498at 1686.895 kb on + strand, within Psyr_1498at 1686.895 kb on + strand, within Psyr_1498at 1686.895 kb on + strand, within Psyr_1498at 1686.896 kb on - strand, within Psyr_1498at 1686.896 kb on - strand, within Psyr_1498at 1686.896 kb on - strand, within Psyr_1498at 1686.896 kb on - strand, within Psyr_1498at 1686.902 kb on + strand, within Psyr_1498at 1686.903 kb on - strand, within Psyr_1498at 1686.913 kb on + strand, within Psyr_1498at 1687.212 kb on + strand, within Psyr_1498at 1687.213 kb on - strand, within Psyr_1498at 1687.213 kb on - strand, within Psyr_1498at 1687.306 kb on + strand, within Psyr_1498at 1687.365 kb on + strand, within Psyr_1498at 1687.366 kb on - strand, within Psyr_1498at 1687.368 kb on + strand, within Psyr_1498at 1687.369 kb on - strand, within Psyr_1498at 1687.369 kb on - strand, within Psyr_1498at 1687.369 kb on - strand, within Psyr_1498at 1687.402 kb on + strand, within Psyr_1498at 1687.402 kb on + strand, within Psyr_1498at 1687.403 kb on - strand, within Psyr_1498at 1687.403 kb on - strand, within Psyr_1498at 1687.403 kb on - strand, within Psyr_1498

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Lupeol 10 mM
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1,684,726 + +3.1
1,684,726 + +0.4
1,684,727 - -0.2
1,684,727 - +1.3
1,684,727 - -0.0
1,684,727 - -0.3
1,684,727 - -0.5
1,684,727 - +2.1
1,684,727 - +0.0
1,684,770 + -1.9
1,684,770 + -0.2
1,684,771 - -0.5
1,684,771 - +0.9
1,684,771 - -0.6
1,684,771 - -1.7
1,684,815 + +0.7
1,684,823 - -0.6
1,685,027 + Psyr_1496 0.32 -0.6
1,685,081 + Psyr_1496 0.38 +0.0
1,685,081 + Psyr_1496 0.38 -2.1
1,685,081 + Psyr_1496 0.38 -0.4
1,685,081 + Psyr_1496 0.38 +3.0
1,685,082 - Psyr_1496 0.38 -0.5
1,685,082 - Psyr_1496 0.38 +0.7
1,685,082 - Psyr_1496 0.38 -1.4
1,685,111 - Psyr_1496 0.41 +0.5
1,685,111 - Psyr_1496 0.41 -0.6
1,685,260 + Psyr_1496 0.57 -2.5
1,685,261 - Psyr_1496 0.57 +1.8
1,685,284 + Psyr_1496 0.59 -3.3
1,685,284 + Psyr_1496 0.59 +0.5
1,685,285 - Psyr_1496 0.59 -2.9
1,685,354 - Psyr_1496 0.67 -0.7
1,685,356 + Psyr_1496 0.67 +0.9
1,685,356 + Psyr_1496 0.67 +0.8
1,685,356 + Psyr_1496 0.67 -0.0
1,685,356 + Psyr_1496 0.67 -0.6
1,685,356 + Psyr_1496 0.67 -0.6
1,685,356 + Psyr_1496 0.67 +0.1
1,685,356 + Psyr_1496 0.67 +0.9
1,685,356 + Psyr_1496 0.67 -0.4
1,685,356 + Psyr_1496 0.67 +0.5
1,685,356 + Psyr_1496 0.67 +0.6
1,685,357 - Psyr_1496 0.67 -0.0
1,685,357 - Psyr_1496 0.67 -0.2
1,685,357 - Psyr_1496 0.67 -1.3
1,685,357 - Psyr_1496 0.67 -0.4
1,685,357 - Psyr_1496 0.67 -0.5
1,685,357 - Psyr_1496 0.67 +0.6
1,685,357 - Psyr_1496 0.67 -0.2
1,685,357 - Psyr_1496 0.67 +1.1
1,685,379 + Psyr_1496 0.69 -1.0
1,685,379 + Psyr_1496 0.69 +1.2
1,685,379 + Psyr_1496 0.69 -0.9
1,685,379 + Psyr_1496 0.69 +0.2
1,685,379 + Psyr_1496 0.69 -0.6
1,685,379 + Psyr_1496 0.69 +1.4
1,685,379 + Psyr_1496 0.69 +1.6
1,685,379 + Psyr_1496 0.69 +0.5
1,685,380 - Psyr_1496 0.70 -1.0
1,685,380 - Psyr_1496 0.70 -0.8
1,685,380 - Psyr_1496 0.70 -0.1
1,685,380 - Psyr_1496 0.70 -0.7
1,685,380 - Psyr_1496 0.70 +0.1
1,685,380 - Psyr_1496 0.70 +2.1
1,685,380 - Psyr_1496 0.70 -0.4
1,685,380 - Psyr_1496 0.70 -0.2
1,685,542 - Psyr_1496 0.87 -1.0
1,685,568 + Psyr_1496 0.90 +1.1
1,685,568 + Psyr_1496 0.90 +0.1
1,685,570 + -3.3
1,685,570 + -0.5
1,685,570 + +0.3
1,685,570 + -1.5
1,685,570 + +0.3
1,685,570 + +1.1
1,685,571 - +1.8
1,685,571 - -0.3
1,685,571 - +0.6
1,685,748 + +1.1
1,685,749 - +0.1
1,685,761 + +0.1
1,685,761 + +0.5
1,685,762 - -1.6
1,685,851 + Psyr_1497 0.19 -0.5
1,685,851 + Psyr_1497 0.19 -0.3
1,685,852 - Psyr_1497 0.19 +1.4
1,686,010 + Psyr_1497 0.42 +0.2
1,686,010 + Psyr_1497 0.42 -1.5
1,686,063 - Psyr_1497 0.50 +1.0
1,686,099 + Psyr_1497 0.55 +2.1
1,686,099 + Psyr_1497 0.55 +1.7
1,686,099 + Psyr_1497 0.55 +2.0
1,686,099 + Psyr_1497 0.55 +2.4
1,686,100 - Psyr_1497 0.55 -0.0
1,686,100 - Psyr_1497 0.55 -0.6
1,686,100 - Psyr_1497 0.55 +1.2
1,686,100 - Psyr_1497 0.55 +0.3
1,686,245 + Psyr_1497 0.77 +0.1
1,686,246 - Psyr_1497 0.77 -0.4
1,686,357 + -0.7
1,686,357 + +0.2
1,686,357 + -0.5
1,686,358 - +0.1
1,686,358 - -0.5
1,686,358 - -0.8
1,686,376 + -0.2
1,686,377 - -0.8
1,686,377 - -1.2
1,686,377 - -1.1
1,686,377 - +0.4
1,686,383 + +1.4
1,686,383 + +0.3
1,686,430 + +1.9
1,686,430 + +0.8
1,686,649 + Psyr_1498 0.18 +0.5
1,686,650 - Psyr_1498 0.18 -0.1
1,686,851 + Psyr_1498 0.33 +0.2
1,686,851 + Psyr_1498 0.33 -1.1
1,686,852 - Psyr_1498 0.33 -0.8
1,686,852 - Psyr_1498 0.33 +0.6
1,686,852 - Psyr_1498 0.33 +0.2
1,686,852 - Psyr_1498 0.33 +0.2
1,686,852 - Psyr_1498 0.33 -1.6
1,686,895 + Psyr_1498 0.36 -1.3
1,686,895 + Psyr_1498 0.36 -0.5
1,686,895 + Psyr_1498 0.36 -0.9
1,686,895 + Psyr_1498 0.36 +0.9
1,686,895 + Psyr_1498 0.36 +0.7
1,686,895 + Psyr_1498 0.36 +0.4
1,686,896 - Psyr_1498 0.36 +0.6
1,686,896 - Psyr_1498 0.36 -0.7
1,686,896 - Psyr_1498 0.36 +0.5
1,686,896 - Psyr_1498 0.36 +3.9
1,686,902 + Psyr_1498 0.36 +0.6
1,686,903 - Psyr_1498 0.36 -0.1
1,686,913 + Psyr_1498 0.37 -0.3
1,687,212 + Psyr_1498 0.59 -0.7
1,687,213 - Psyr_1498 0.59 -1.0
1,687,213 - Psyr_1498 0.59 +0.6
1,687,306 + Psyr_1498 0.66 -0.6
1,687,365 + Psyr_1498 0.70 -0.6
1,687,366 - Psyr_1498 0.70 -0.8
1,687,368 + Psyr_1498 0.70 +0.1
1,687,369 - Psyr_1498 0.70 -1.2
1,687,369 - Psyr_1498 0.70 +1.5
1,687,369 - Psyr_1498 0.70 +0.3
1,687,402 + Psyr_1498 0.72 +0.2
1,687,402 + Psyr_1498 0.72 +0.2
1,687,403 - Psyr_1498 0.73 -0.5
1,687,403 - Psyr_1498 0.73 +0.7
1,687,403 - Psyr_1498 0.73 -0.7

Or see this region's nucleotide sequence