Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0900

Experiment: KB with Lupeol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0898 and Psyr_0899 are separated by 0 nucleotidesPsyr_0899 and Psyr_0900 are separated by 62 nucleotidesPsyr_0900 and Psyr_0901 are separated by 57 nucleotidesPsyr_0901 and Psyr_0902 are separated by 42 nucleotides Psyr_0898: Psyr_0898 - TRAP dicarboxylate transporter, DctM subunit, at 1,017,185 to 1,018,465 _0898 Psyr_0899: Psyr_0899 - Tripartite ATP-independent periplasmic transporter, DctQ component, at 1,018,466 to 1,018,993 _0899 Psyr_0900: Psyr_0900 - TRAP dicarboxylate transporter- DctP subunit, at 1,019,056 to 1,020,081 _0900 Psyr_0901: Psyr_0901 - gluconolactonase, at 1,020,139 to 1,021,023 _0901 Psyr_0902: Psyr_0902 - conserved hypothetical protein, at 1,021,066 to 1,021,893 _0902 Position (kb) 1019 1020 1021Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1018.436 kb on - strandat 1018.451 kb on + strandat 1018.451 kb on + strandat 1018.451 kb on + strandat 1018.451 kb on + strandat 1018.452 kb on - strandat 1018.452 kb on - strandat 1018.453 kb on + strandat 1018.453 kb on + strandat 1018.453 kb on + strandat 1018.453 kb on + strandat 1018.453 kb on + strandat 1018.454 kb on - strandat 1018.454 kb on - strandat 1018.454 kb on - strandat 1018.454 kb on - strandat 1018.454 kb on - strandat 1018.454 kb on - strandat 1018.468 kb on - strandat 1018.468 kb on - strandat 1018.468 kb on - strandat 1018.468 kb on - strandat 1018.468 kb on - strandat 1018.468 kb on - strandat 1018.557 kb on - strand, within Psyr_0899at 1018.557 kb on - strand, within Psyr_0899at 1018.649 kb on - strand, within Psyr_0899at 1018.715 kb on + strand, within Psyr_0899at 1018.715 kb on + strand, within Psyr_0899at 1018.716 kb on - strand, within Psyr_0899at 1018.716 kb on - strand, within Psyr_0899at 1018.816 kb on + strand, within Psyr_0899at 1018.816 kb on + strand, within Psyr_0899at 1018.878 kb on + strand, within Psyr_0899at 1018.878 kb on + strand, within Psyr_0899at 1018.878 kb on + strand, within Psyr_0899at 1018.879 kb on - strand, within Psyr_0899at 1018.979 kb on + strandat 1018.985 kb on - strandat 1018.985 kb on - strandat 1018.985 kb on - strandat 1018.985 kb on - strandat 1018.985 kb on - strandat 1018.993 kb on + strandat 1019.057 kb on + strandat 1019.058 kb on - strandat 1019.133 kb on + strandat 1019.133 kb on + strandat 1019.134 kb on - strandat 1019.134 kb on - strandat 1019.134 kb on - strandat 1019.134 kb on - strandat 1019.135 kb on + strandat 1019.135 kb on + strandat 1019.135 kb on + strandat 1019.135 kb on + strandat 1019.135 kb on + strandat 1019.135 kb on + strandat 1019.136 kb on - strandat 1019.136 kb on - strandat 1019.136 kb on - strandat 1019.136 kb on - strandat 1019.136 kb on - strandat 1019.147 kb on + strandat 1019.147 kb on + strandat 1019.147 kb on + strandat 1019.147 kb on + strandat 1019.147 kb on + strandat 1019.147 kb on + strandat 1019.148 kb on - strandat 1019.148 kb on - strandat 1019.177 kb on + strand, within Psyr_0900at 1019.177 kb on + strand, within Psyr_0900at 1019.428 kb on - strand, within Psyr_0900at 1019.439 kb on - strand, within Psyr_0900at 1019.439 kb on - strand, within Psyr_0900at 1019.624 kb on + strand, within Psyr_0900at 1019.624 kb on + strand, within Psyr_0900at 1019.625 kb on - strand, within Psyr_0900at 1019.736 kb on + strand, within Psyr_0900at 1019.736 kb on + strand, within Psyr_0900at 1019.737 kb on - strand, within Psyr_0900at 1019.891 kb on + strand, within Psyr_0900at 1019.892 kb on - strand, within Psyr_0900at 1020.086 kb on - strandat 1020.384 kb on - strand, within Psyr_0901at 1020.533 kb on + strand, within Psyr_0901at 1020.533 kb on + strand, within Psyr_0901at 1020.533 kb on + strand, within Psyr_0901at 1020.533 kb on + strand, within Psyr_0901at 1020.533 kb on + strand, within Psyr_0901at 1020.533 kb on + strand, within Psyr_0901at 1020.533 kb on + strand, within Psyr_0901at 1020.533 kb on + strand, within Psyr_0901at 1020.533 kb on + strand, within Psyr_0901at 1020.533 kb on + strand, within Psyr_0901at 1020.533 kb on + strand, within Psyr_0901at 1020.533 kb on + strand, within Psyr_0901at 1020.533 kb on + strand, within Psyr_0901at 1020.533 kb on + strand, within Psyr_0901at 1020.533 kb on + strand, within Psyr_0901at 1020.534 kb on - strand, within Psyr_0901at 1020.534 kb on - strand, within Psyr_0901at 1020.534 kb on - strand, within Psyr_0901at 1020.534 kb on - strand, within Psyr_0901at 1020.534 kb on - strand, within Psyr_0901at 1020.534 kb on - strand, within Psyr_0901at 1020.534 kb on - strand, within Psyr_0901at 1020.534 kb on - strand, within Psyr_0901at 1020.534 kb on - strand, within Psyr_0901at 1020.534 kb on - strand, within Psyr_0901at 1020.534 kb on - strand, within Psyr_0901at 1020.534 kb on - strand, within Psyr_0901at 1020.534 kb on - strand, within Psyr_0901at 1020.623 kb on + strand, within Psyr_0901at 1020.623 kb on + strand, within Psyr_0901at 1020.630 kb on - strand, within Psyr_0901at 1021.067 kb on + strandat 1021.067 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Lupeol 10 mM
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1,018,436 - -0.1
1,018,451 + -0.8
1,018,451 + +1.2
1,018,451 + -1.3
1,018,451 + +0.2
1,018,452 - -0.7
1,018,452 - +0.3
1,018,453 + +1.0
1,018,453 + +0.0
1,018,453 + +2.2
1,018,453 + +0.4
1,018,453 + -1.0
1,018,454 - -0.3
1,018,454 - -0.4
1,018,454 - -1.8
1,018,454 - -0.3
1,018,454 - +0.4
1,018,454 - -0.6
1,018,468 - -0.1
1,018,468 - +0.1
1,018,468 - +0.9
1,018,468 - -1.4
1,018,468 - -0.7
1,018,468 - -0.6
1,018,557 - Psyr_0899 0.17 +0.4
1,018,557 - Psyr_0899 0.17 +1.6
1,018,649 - Psyr_0899 0.35 +0.2
1,018,715 + Psyr_0899 0.47 +1.2
1,018,715 + Psyr_0899 0.47 -0.1
1,018,716 - Psyr_0899 0.47 +0.2
1,018,716 - Psyr_0899 0.47 -0.5
1,018,816 + Psyr_0899 0.66 +0.2
1,018,816 + Psyr_0899 0.66 -0.2
1,018,878 + Psyr_0899 0.78 +0.3
1,018,878 + Psyr_0899 0.78 +0.2
1,018,878 + Psyr_0899 0.78 +0.0
1,018,879 - Psyr_0899 0.78 -2.0
1,018,979 + -1.6
1,018,985 - -1.0
1,018,985 - -0.8
1,018,985 - -0.6
1,018,985 - -0.7
1,018,985 - +0.6
1,018,993 + +0.1
1,019,057 + -0.7
1,019,058 - +0.6
1,019,133 + -0.4
1,019,133 + +0.1
1,019,134 - -1.5
1,019,134 - +2.7
1,019,134 - +1.5
1,019,134 - +0.0
1,019,135 + -0.1
1,019,135 + +0.2
1,019,135 + +1.4
1,019,135 + -1.9
1,019,135 + +2.3
1,019,135 + -1.4
1,019,136 - +0.6
1,019,136 - -0.5
1,019,136 - +0.5
1,019,136 - -1.1
1,019,136 - -0.6
1,019,147 + +0.7
1,019,147 + +0.7
1,019,147 + -0.9
1,019,147 + +0.7
1,019,147 + +0.3
1,019,147 + +0.1
1,019,148 - +1.0
1,019,148 - -0.8
1,019,177 + Psyr_0900 0.12 +0.1
1,019,177 + Psyr_0900 0.12 +0.9
1,019,428 - Psyr_0900 0.36 +1.8
1,019,439 - Psyr_0900 0.37 +0.4
1,019,439 - Psyr_0900 0.37 -0.4
1,019,624 + Psyr_0900 0.55 +1.0
1,019,624 + Psyr_0900 0.55 +0.4
1,019,625 - Psyr_0900 0.55 +3.2
1,019,736 + Psyr_0900 0.66 -0.3
1,019,736 + Psyr_0900 0.66 -0.2
1,019,737 - Psyr_0900 0.66 +0.9
1,019,891 + Psyr_0900 0.81 -0.6
1,019,892 - Psyr_0900 0.81 +0.2
1,020,086 - -0.6
1,020,384 - Psyr_0901 0.28 -0.2
1,020,533 + Psyr_0901 0.45 -0.4
1,020,533 + Psyr_0901 0.45 -3.2
1,020,533 + Psyr_0901 0.45 +1.7
1,020,533 + Psyr_0901 0.45 +0.3
1,020,533 + Psyr_0901 0.45 -1.5
1,020,533 + Psyr_0901 0.45 +0.6
1,020,533 + Psyr_0901 0.45 -0.4
1,020,533 + Psyr_0901 0.45 -0.7
1,020,533 + Psyr_0901 0.45 -0.3
1,020,533 + Psyr_0901 0.45 -0.2
1,020,533 + Psyr_0901 0.45 -2.4
1,020,533 + Psyr_0901 0.45 +2.7
1,020,533 + Psyr_0901 0.45 +0.4
1,020,533 + Psyr_0901 0.45 +1.0
1,020,533 + Psyr_0901 0.45 +0.2
1,020,534 - Psyr_0901 0.45 -0.2
1,020,534 - Psyr_0901 0.45 -1.8
1,020,534 - Psyr_0901 0.45 -0.2
1,020,534 - Psyr_0901 0.45 +0.9
1,020,534 - Psyr_0901 0.45 +0.2
1,020,534 - Psyr_0901 0.45 -1.2
1,020,534 - Psyr_0901 0.45 +1.1
1,020,534 - Psyr_0901 0.45 -1.0
1,020,534 - Psyr_0901 0.45 -0.8
1,020,534 - Psyr_0901 0.45 -0.5
1,020,534 - Psyr_0901 0.45 +0.3
1,020,534 - Psyr_0901 0.45 -0.7
1,020,534 - Psyr_0901 0.45 +0.2
1,020,623 + Psyr_0901 0.55 +2.0
1,020,623 + Psyr_0901 0.55 -0.2
1,020,630 - Psyr_0901 0.55 -0.4
1,021,067 + +0.2
1,021,067 + +0.7

Or see this region's nucleotide sequence