Experiment: KB with Lupeol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0771 and Psyr_0772 are separated by 12 nucleotides Psyr_0772 and Psyr_0773 overlap by 4 nucleotides Psyr_0773 and Psyr_0774 overlap by 4 nucleotides
Psyr_0771: Psyr_0771 - acetylornithine deacetylase, at 875,599 to 876,741
_0771
Psyr_0772: Psyr_0772 - Protein of unknown function DUF1355, at 876,754 to 877,509
_0772
Psyr_0773: Psyr_0773 - Aryldialkylphosphatase, at 877,506 to 878,621
_0773
Psyr_0774: Psyr_0774 - monosaccharide ABC transporter membrane protein, CUT2 family, at 878,618 to 879,637
_0774
Position (kb) 877
878
879 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 876.726 kb on + strand at 876.727 kb on - strand at 876.727 kb on - strand at 876.727 kb on - strand at 876.968 kb on + strand, within Psyr_0772 at 876.980 kb on + strand, within Psyr_0772 at 877.070 kb on + strand, within Psyr_0772 at 877.085 kb on - strand, within Psyr_0772 at 877.194 kb on - strand, within Psyr_0772 at 877.194 kb on - strand, within Psyr_0772 at 877.194 kb on - strand, within Psyr_0772 at 877.267 kb on - strand, within Psyr_0772 at 877.495 kb on + strand at 877.651 kb on + strand, within Psyr_0773 at 877.651 kb on + strand, within Psyr_0773 at 877.807 kb on + strand, within Psyr_0773 at 877.807 kb on + strand, within Psyr_0773 at 877.807 kb on + strand, within Psyr_0773 at 877.807 kb on + strand, within Psyr_0773 at 877.807 kb on + strand, within Psyr_0773 at 877.807 kb on + strand, within Psyr_0773 at 877.807 kb on + strand, within Psyr_0773 at 877.807 kb on + strand, within Psyr_0773 at 877.807 kb on + strand, within Psyr_0773 at 877.807 kb on + strand, within Psyr_0773 at 877.807 kb on + strand, within Psyr_0773 at 877.807 kb on + strand, within Psyr_0773 at 877.807 kb on + strand, within Psyr_0773 at 877.807 kb on + strand, within Psyr_0773 at 877.808 kb on - strand, within Psyr_0773 at 877.808 kb on - strand, within Psyr_0773 at 877.808 kb on - strand, within Psyr_0773 at 877.808 kb on - strand, within Psyr_0773 at 877.808 kb on - strand, within Psyr_0773 at 877.808 kb on - strand, within Psyr_0773 at 877.808 kb on - strand, within Psyr_0773 at 877.810 kb on + strand, within Psyr_0773 at 877.810 kb on + strand, within Psyr_0773 at 877.811 kb on - strand, within Psyr_0773 at 877.811 kb on - strand, within Psyr_0773 at 877.831 kb on + strand, within Psyr_0773 at 878.182 kb on + strand, within Psyr_0773 at 878.182 kb on + strand, within Psyr_0773 at 878.182 kb on + strand, within Psyr_0773 at 878.182 kb on + strand, within Psyr_0773 at 878.182 kb on + strand, within Psyr_0773 at 878.183 kb on - strand, within Psyr_0773 at 878.183 kb on - strand, within Psyr_0773 at 878.183 kb on - strand, within Psyr_0773 at 878.183 kb on - strand, within Psyr_0773 at 878.183 kb on - strand, within Psyr_0773 at 878.207 kb on - strand, within Psyr_0773 at 878.207 kb on - strand, within Psyr_0773 at 878.207 kb on - strand, within Psyr_0773 at 878.228 kb on + strand, within Psyr_0773 at 878.228 kb on + strand, within Psyr_0773 at 878.654 kb on + strand at 878.654 kb on + strand at 878.654 kb on + strand at 878.654 kb on + strand at 878.655 kb on - strand at 878.655 kb on - strand at 878.655 kb on - strand at 878.655 kb on - strand at 878.687 kb on + strand at 878.687 kb on + strand at 878.716 kb on - strand at 878.768 kb on - strand, within Psyr_0774 at 878.946 kb on + strand, within Psyr_0774 at 878.946 kb on + strand, within Psyr_0774 at 879.168 kb on + strand, within Psyr_0774 at 879.168 kb on + strand, within Psyr_0774 at 879.203 kb on - strand, within Psyr_0774 at 879.203 kb on - strand, within Psyr_0774 at 879.491 kb on + strand, within Psyr_0774
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Lupeol 10 mM remove 876,726 + -0.4 876,727 - -1.1 876,727 - -0.1 876,727 - -0.5 876,968 + Psyr_0772 0.28 -0.3 876,980 + Psyr_0772 0.30 -0.4 877,070 + Psyr_0772 0.42 -1.3 877,085 - Psyr_0772 0.44 +0.2 877,194 - Psyr_0772 0.58 -0.3 877,194 - Psyr_0772 0.58 -1.4 877,194 - Psyr_0772 0.58 +0.8 877,267 - Psyr_0772 0.68 -1.1 877,495 + +0.7 877,651 + Psyr_0773 0.13 -0.0 877,651 + Psyr_0773 0.13 -0.3 877,807 + Psyr_0773 0.27 +0.4 877,807 + Psyr_0773 0.27 +0.5 877,807 + Psyr_0773 0.27 +0.5 877,807 + Psyr_0773 0.27 -0.0 877,807 + Psyr_0773 0.27 -0.5 877,807 + Psyr_0773 0.27 +0.4 877,807 + Psyr_0773 0.27 +0.6 877,807 + Psyr_0773 0.27 -0.3 877,807 + Psyr_0773 0.27 -0.1 877,807 + Psyr_0773 0.27 -0.2 877,807 + Psyr_0773 0.27 +2.0 877,807 + Psyr_0773 0.27 +0.6 877,807 + Psyr_0773 0.27 -0.2 877,807 + Psyr_0773 0.27 +0.8 877,808 - Psyr_0773 0.27 +0.2 877,808 - Psyr_0773 0.27 +1.5 877,808 - Psyr_0773 0.27 -0.8 877,808 - Psyr_0773 0.27 +0.1 877,808 - Psyr_0773 0.27 +1.2 877,808 - Psyr_0773 0.27 -1.3 877,808 - Psyr_0773 0.27 +0.2 877,810 + Psyr_0773 0.27 +3.2 877,810 + Psyr_0773 0.27 +1.2 877,811 - Psyr_0773 0.27 -0.7 877,811 - Psyr_0773 0.27 +0.2 877,831 + Psyr_0773 0.29 -0.9 878,182 + Psyr_0773 0.61 +0.5 878,182 + Psyr_0773 0.61 +0.0 878,182 + Psyr_0773 0.61 -3.0 878,182 + Psyr_0773 0.61 +0.5 878,182 + Psyr_0773 0.61 +0.6 878,183 - Psyr_0773 0.61 +0.7 878,183 - Psyr_0773 0.61 +1.7 878,183 - Psyr_0773 0.61 +0.2 878,183 - Psyr_0773 0.61 +2.8 878,183 - Psyr_0773 0.61 +0.8 878,207 - Psyr_0773 0.63 +0.0 878,207 - Psyr_0773 0.63 +0.0 878,207 - Psyr_0773 0.63 -0.4 878,228 + Psyr_0773 0.65 -0.3 878,228 + Psyr_0773 0.65 -0.9 878,654 + -1.4 878,654 + -2.2 878,654 + +0.6 878,654 + -0.8 878,655 - +0.1 878,655 - -0.2 878,655 - -0.3 878,655 - +0.2 878,687 + +1.0 878,687 + +0.9 878,716 - -0.5 878,768 - Psyr_0774 0.15 +0.8 878,946 + Psyr_0774 0.32 +0.3 878,946 + Psyr_0774 0.32 +1.2 879,168 + Psyr_0774 0.54 +1.5 879,168 + Psyr_0774 0.54 -0.8 879,203 - Psyr_0774 0.57 -0.1 879,203 - Psyr_0774 0.57 +0.5 879,491 + Psyr_0774 0.86 -1.1
Or see this region's nucleotide sequence