Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0248

Experiment: KB with Lupeol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0246 and Psyr_0247 are separated by 43 nucleotidesPsyr_0247 and Psyr_0248 are separated by 69 nucleotidesPsyr_0248 and Psyr_0249 are separated by 141 nucleotides Psyr_0246: Psyr_0246 - aminomethyltransferase, at 259,665 to 260,747 _0246 Psyr_0247: Psyr_0247 - glycine cleavage system H protein, at 260,791 to 261,177 _0247 Psyr_0248: Psyr_0248 - conserved hypothetical protein, at 261,247 to 261,567 _0248 Psyr_0249: Psyr_0249 - type II secretion system protein E:General secretory system II, protein E, N-terminal, at 261,709 to 263,493 _0249 Position (kb) 261 262Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 260.368 kb on - strand, within Psyr_0246at 260.454 kb on - strand, within Psyr_0246at 260.557 kb on + strand, within Psyr_0246at 260.557 kb on + strand, within Psyr_0246at 260.557 kb on + strand, within Psyr_0246at 260.557 kb on + strand, within Psyr_0246at 260.557 kb on + strand, within Psyr_0246at 260.557 kb on + strand, within Psyr_0246at 260.557 kb on + strand, within Psyr_0246at 260.558 kb on - strand, within Psyr_0246at 260.558 kb on - strand, within Psyr_0246at 260.558 kb on - strand, within Psyr_0246at 260.558 kb on - strand, within Psyr_0246at 260.558 kb on - strand, within Psyr_0246at 260.558 kb on - strand, within Psyr_0246at 260.558 kb on - strand, within Psyr_0246at 260.597 kb on + strand, within Psyr_0246at 260.609 kb on + strand, within Psyr_0246at 260.609 kb on + strand, within Psyr_0246at 260.609 kb on + strand, within Psyr_0246at 260.610 kb on - strand, within Psyr_0246at 260.610 kb on - strand, within Psyr_0246at 260.610 kb on - strand, within Psyr_0246at 260.610 kb on - strand, within Psyr_0246at 260.745 kb on + strandat 260.745 kb on + strandat 260.746 kb on - strandat 260.750 kb on + strandat 260.750 kb on + strandat 260.750 kb on + strandat 260.750 kb on + strandat 260.788 kb on + strandat 260.788 kb on + strandat 260.788 kb on + strandat 260.788 kb on + strandat 260.788 kb on + strandat 260.789 kb on - strandat 260.789 kb on - strandat 260.789 kb on - strandat 260.799 kb on + strandat 260.998 kb on - strand, within Psyr_0247at 261.001 kb on + strand, within Psyr_0247at 261.001 kb on + strand, within Psyr_0247at 261.001 kb on + strand, within Psyr_0247at 261.001 kb on + strand, within Psyr_0247at 261.001 kb on + strand, within Psyr_0247at 261.001 kb on + strand, within Psyr_0247at 261.001 kb on + strand, within Psyr_0247at 261.001 kb on + strand, within Psyr_0247at 261.002 kb on - strand, within Psyr_0247at 261.002 kb on - strand, within Psyr_0247at 261.002 kb on - strand, within Psyr_0247at 261.002 kb on - strand, within Psyr_0247at 261.154 kb on + strandat 261.248 kb on + strandat 261.248 kb on + strandat 261.248 kb on + strandat 261.248 kb on + strandat 261.248 kb on + strandat 261.249 kb on - strandat 261.249 kb on - strandat 261.449 kb on + strand, within Psyr_0248at 261.449 kb on + strand, within Psyr_0248at 261.449 kb on + strand, within Psyr_0248at 261.450 kb on - strand, within Psyr_0248at 261.450 kb on - strand, within Psyr_0248at 261.575 kb on + strandat 261.575 kb on + strandat 261.576 kb on - strandat 261.576 kb on - strandat 261.576 kb on - strandat 261.611 kb on + strandat 261.611 kb on + strandat 261.611 kb on + strandat 261.611 kb on + strandat 261.612 kb on - strandat 261.612 kb on - strandat 261.612 kb on - strandat 261.612 kb on - strandat 261.624 kb on + strandat 261.624 kb on + strandat 261.624 kb on + strandat 261.624 kb on + strandat 261.624 kb on + strandat 261.624 kb on + strandat 261.624 kb on + strandat 261.625 kb on - strandat 261.625 kb on - strandat 261.625 kb on - strandat 261.625 kb on - strandat 261.625 kb on - strandat 261.625 kb on - strandat 261.625 kb on - strandat 261.657 kb on + strandat 261.756 kb on + strandat 261.757 kb on - strandat 261.757 kb on - strandat 261.757 kb on - strandat 261.757 kb on - strandat 261.900 kb on - strand, within Psyr_0249at 262.106 kb on + strand, within Psyr_0249at 262.107 kb on - strand, within Psyr_0249at 262.255 kb on - strand, within Psyr_0249at 262.415 kb on + strand, within Psyr_0249at 262.416 kb on - strand, within Psyr_0249at 262.416 kb on - strand, within Psyr_0249at 262.416 kb on - strand, within Psyr_0249at 262.416 kb on - strand, within Psyr_0249at 262.416 kb on - strand, within Psyr_0249at 262.461 kb on + strand, within Psyr_0249at 262.461 kb on + strand, within Psyr_0249at 262.461 kb on + strand, within Psyr_0249at 262.462 kb on - strand, within Psyr_0249at 262.546 kb on + strand, within Psyr_0249at 262.546 kb on + strand, within Psyr_0249at 262.547 kb on - strand, within Psyr_0249at 262.547 kb on - strand, within Psyr_0249at 262.547 kb on - strand, within Psyr_0249

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Lupeol 10 mM
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260,368 - Psyr_0246 0.65 -0.6
260,454 - Psyr_0246 0.73 +1.8
260,557 + Psyr_0246 0.82 +0.9
260,557 + Psyr_0246 0.82 -0.4
260,557 + Psyr_0246 0.82 -1.0
260,557 + Psyr_0246 0.82 -2.0
260,557 + Psyr_0246 0.82 +1.8
260,557 + Psyr_0246 0.82 -1.7
260,557 + Psyr_0246 0.82 -2.3
260,558 - Psyr_0246 0.82 +1.4
260,558 - Psyr_0246 0.82 +1.3
260,558 - Psyr_0246 0.82 -1.1
260,558 - Psyr_0246 0.82 -0.6
260,558 - Psyr_0246 0.82 +1.4
260,558 - Psyr_0246 0.82 -1.4
260,558 - Psyr_0246 0.82 -1.0
260,597 + Psyr_0246 0.86 -1.6
260,609 + Psyr_0246 0.87 +0.7
260,609 + Psyr_0246 0.87 -2.2
260,609 + Psyr_0246 0.87 -2.4
260,610 - Psyr_0246 0.87 +1.1
260,610 - Psyr_0246 0.87 -1.4
260,610 - Psyr_0246 0.87 -0.0
260,610 - Psyr_0246 0.87 -1.3
260,745 + -0.0
260,745 + +1.1
260,746 - +0.2
260,750 + -2.9
260,750 + +1.1
260,750 + -0.9
260,750 + +2.1
260,788 + +0.6
260,788 + -0.2
260,788 + -0.2
260,788 + +0.8
260,788 + +1.0
260,789 - +1.1
260,789 - -0.3
260,789 - -1.3
260,799 + +0.5
260,998 - Psyr_0247 0.53 -2.0
261,001 + Psyr_0247 0.54 -0.4
261,001 + Psyr_0247 0.54 -0.8
261,001 + Psyr_0247 0.54 -0.2
261,001 + Psyr_0247 0.54 -0.5
261,001 + Psyr_0247 0.54 -0.3
261,001 + Psyr_0247 0.54 -0.0
261,001 + Psyr_0247 0.54 -1.4
261,001 + Psyr_0247 0.54 -1.4
261,002 - Psyr_0247 0.55 -0.2
261,002 - Psyr_0247 0.55 -0.5
261,002 - Psyr_0247 0.55 +0.0
261,002 - Psyr_0247 0.55 +0.9
261,154 + -0.8
261,248 + -1.6
261,248 + -1.6
261,248 + +0.0
261,248 + -0.4
261,248 + -0.8
261,249 - +0.6
261,249 - -0.0
261,449 + Psyr_0248 0.63 +1.6
261,449 + Psyr_0248 0.63 +0.6
261,449 + Psyr_0248 0.63 +1.1
261,450 - Psyr_0248 0.63 +1.1
261,450 - Psyr_0248 0.63 -1.0
261,575 + -0.6
261,575 + +0.1
261,576 - +1.8
261,576 - +1.4
261,576 - +0.8
261,611 + +1.1
261,611 + -1.4
261,611 + -0.2
261,611 + -1.0
261,612 - -2.6
261,612 - -1.1
261,612 - -0.4
261,612 - -0.1
261,624 + -0.7
261,624 + -1.0
261,624 + -0.3
261,624 + +1.4
261,624 + -1.4
261,624 + +0.1
261,624 + +0.1
261,625 - +0.4
261,625 - -0.0
261,625 - +0.4
261,625 - +1.7
261,625 - -0.5
261,625 - +1.0
261,625 - -1.0
261,657 + -0.4
261,756 + -0.1
261,757 - +1.8
261,757 - -1.1
261,757 - -0.6
261,757 - +0.2
261,900 - Psyr_0249 0.11 -1.5
262,106 + Psyr_0249 0.22 -0.2
262,107 - Psyr_0249 0.22 -0.8
262,255 - Psyr_0249 0.31 -0.8
262,415 + Psyr_0249 0.40 +0.2
262,416 - Psyr_0249 0.40 -0.9
262,416 - Psyr_0249 0.40 -0.7
262,416 - Psyr_0249 0.40 -2.0
262,416 - Psyr_0249 0.40 -0.6
262,416 - Psyr_0249 0.40 -1.7
262,461 + Psyr_0249 0.42 -1.1
262,461 + Psyr_0249 0.42 +0.3
262,461 + Psyr_0249 0.42 +0.5
262,462 - Psyr_0249 0.42 +0.5
262,546 + Psyr_0249 0.47 -0.8
262,546 + Psyr_0249 0.47 +0.9
262,547 - Psyr_0249 0.47 -2.5
262,547 - Psyr_0249 0.47 -2.0
262,547 - Psyr_0249 0.47 +1.4

Or see this region's nucleotide sequence