Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_005116

Experiment: R2A with Clay 500 g/L

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Clay 500 g/L
1,367,154	-				+1.6
1,367,171	+				-1.5
1,367,171	+				-0.8
1,367,172	-				-1.0
1,367,172	-				-1.0
1,367,172	-				-0.2
1,367,172	-				-0.2
1,367,172	-				+0.0
1,367,254	+				+1.6
1,367,254	+				+0.6
1,367,254	+				+0.6
1,367,255	-				-2.0
1,367,350	+		ABIE53_005115	0.19	+1.3
1,367,491	-		ABIE53_005115	0.33	+0.4
1,367,491	-		ABIE53_005115	0.33	+0.6
1,367,567	+		ABIE53_005115	0.41	+0.6
1,367,580	+		ABIE53_005115	0.42	+1.9
1,367,580	+		ABIE53_005115	0.42	+3.6
1,367,580	+		ABIE53_005115	0.42	+0.6
1,367,581	-		ABIE53_005115	0.42	-0.2
1,367,581	-		ABIE53_005115	0.42	-0.4
1,367,663	-		ABIE53_005115	0.51	-1.4
1,367,701	+		ABIE53_005115	0.55	-0.8
1,367,701	+		ABIE53_005115	0.55	+1.0
1,367,702	-		ABIE53_005115	0.55	+2.6
1,367,702	-		ABIE53_005115	0.55	-1.3
1,367,840	-		ABIE53_005115	0.69	-0.6
1,367,937	+		ABIE53_005115	0.79	-0.0
1,367,937	+		ABIE53_005115	0.79	+2.0
1,367,938	-		ABIE53_005115	0.79	-0.1
1,367,938	-		ABIE53_005115	0.79	-1.0
1,367,938	-		ABIE53_005115	0.79	+1.0
1,368,030	+		ABIE53_005115	0.88	-1.9
1,368,149	+				+0.7
1,368,149	+				-0.1
1,368,149	+				+0.4
1,368,150	-				-1.4
1,368,150	-				-1.2
1,368,279	-		ABIE53_005116	0.15	+0.2
1,368,383	+		ABIE53_005116	0.27	-0.8
1,368,648	-		ABIE53_005116	0.56	-0.8
1,368,648	-		ABIE53_005116	0.56	+0.9
1,368,695	+		ABIE53_005116	0.62	+0.6
1,368,695	+		ABIE53_005116	0.62	-0.4
1,368,695	+		ABIE53_005116	0.62	+0.6
1,368,696	-		ABIE53_005116	0.62	+1.6
1,368,696	-		ABIE53_005116	0.62	-0.4
1,368,696	-		ABIE53_005116	0.62	-0.0
1,368,785	+		ABIE53_005116	0.72	+0.8
1,368,809	+		ABIE53_005116	0.75	+0.6
1,368,809	+		ABIE53_005116	0.75	+1.6
1,368,822	+		ABIE53_005116	0.76	+1.0
1,368,822	+		ABIE53_005116	0.76	+2.6
1,368,823	-		ABIE53_005116	0.76	+1.8
1,368,823	-		ABIE53_005116	0.76	+0.7
1,368,823	-		ABIE53_005116	0.76	+1.0
1,368,889	-		ABIE53_005116	0.84	+1.1
1,368,988	+				-2.0
1,368,989	-				+1.6
1,368,989	-				+0.6
1,369,010	-				-1.6
1,369,032	+				-1.6
1,369,032	+				+1.6
1,369,033	-				-0.6
1,369,033	-				-0.0
1,369,033	-				-0.0
1,369,033	-				+0.8
1,369,033	-				-0.0
1,369,044	+				-0.5
1,369,045	-				-1.0
1,369,121	-				+1.3
1,369,121	-				+2.2
1,369,143	+				-0.0
1,369,143	+				-2.3
1,369,157	+				-2.5
1,369,157	+				+1.6
1,369,157	+				-0.6
1,369,158	-				-0.9
1,369,214	+				-1.1
1,369,250	+				+0.6
1,369,250	+				+2.2
1,369,250	+				-0.1
1,369,251	-				+1.4
1,369,251	-				-0.8
1,369,251	-				-1.6
1,369,251	-				+0.6
1,369,404	+				-0.6
1,369,404	+				-1.6
1,369,404	+				+2.9
1,369,405	-				+0.3
1,369,742	-		ABIE53_005117	0.30	-2.0
1,369,742	-		ABIE53_005117	0.30	+0.9
1,369,817	+		ABIE53_005117	0.35	-0.3
1,369,817	+		ABIE53_005117	0.35	-1.0
1,369,817	+		ABIE53_005117	0.35	-0.6
1,369,817	+		ABIE53_005117	0.35	+0.6
1,369,818	-		ABIE53_005117	0.35	+0.2
1,369,847	+		ABIE53_005117	0.37	+0.5