Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1511

Experiment: MoLS4 with L-Alanine as nutrient 10mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU1509 and DVU1510 overlap by 8 nucleotidesDVU1510 and DVU1511 are separated by 108 nucleotidesDVU1511 and DVU1513 are separated by 249 nucleotidesDVU1513 and DVU1514 are separated by 168 nucleotides DVU1509: DVU1509 - conserved hypothetical protein (TIGR), at 1,582,050 to 1,582,439 DVU1509 DVU1510: DVU1510 - hypothetical protein (TIGR), at 1,582,432 to 1,582,995 DVU1510 DVU1511: DVU1511 - hypothetical protein (TIGR), at 1,583,104 to 1,583,334 DVU1511 DVU1513: DVU1513 - conserved hypothetical protein (TIGR), at 1,583,584 to 1,584,078 DVU1513 DVU1514: DVU1514 - hypothetical protein (TIGR), at 1,584,247 to 1,585,464 DVU1514 Position (kb) 1583 1584Strain fitness (log2 ratio) -1 0 1 2at 1582.429 kb on + strandat 1582.898 kb on + strand, within DVU1510at 1583.091 kb on + strandat 1583.195 kb on + strand, within DVU1511at 1583.281 kb on - strand, within DVU1511at 1583.293 kb on + strand, within DVU1511at 1583.434 kb on + strandat 1583.442 kb on - strandat 1583.498 kb on + strandat 1583.513 kb on + strandat 1583.558 kb on + strandat 1583.582 kb on + strandat 1583.582 kb on + strandat 1583.590 kb on - strandat 1583.590 kb on - strandat 1583.702 kb on + strand, within DVU1513at 1583.703 kb on + strand, within DVU1513at 1583.710 kb on - strand, within DVU1513at 1583.837 kb on - strand, within DVU1513at 1583.898 kb on + strand, within DVU1513at 1583.906 kb on - strand, within DVU1513at 1583.947 kb on - strand, within DVU1513at 1583.998 kb on + strand, within DVU1513at 1584.002 kb on + strand, within DVU1513at 1584.006 kb on - strand, within DVU1513at 1584.026 kb on + strand, within DVU1513at 1584.026 kb on + strand, within DVU1513at 1584.034 kb on + strandat 1584.049 kb on + strandat 1584.083 kb on - strandat 1584.088 kb on - strandat 1584.138 kb on - strandat 1584.147 kb on + strandat 1584.176 kb on + strandat 1584.274 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Alanine as nutrient 10mM
remove
1,582,429 + -0.4
1,582,898 + DVU1510 0.83 -0.7
1,583,091 + -0.6
1,583,195 + DVU1511 0.39 -1.6
1,583,281 - DVU1511 0.77 -0.9
1,583,293 + DVU1511 0.82 -1.2
1,583,434 + -0.7
1,583,442 - -1.3
1,583,498 + +1.3
1,583,513 + +0.1
1,583,558 + +0.1
1,583,582 + +0.4
1,583,582 + -0.1
1,583,590 - -1.3
1,583,590 - -0.3
1,583,702 + DVU1513 0.24 -0.9
1,583,703 + DVU1513 0.24 -0.4
1,583,710 - DVU1513 0.25 +1.0
1,583,837 - DVU1513 0.51 -1.3
1,583,898 + DVU1513 0.63 -1.0
1,583,906 - DVU1513 0.65 -0.0
1,583,947 - DVU1513 0.73 -0.4
1,583,998 + DVU1513 0.84 -1.5
1,584,002 + DVU1513 0.84 -1.7
1,584,006 - DVU1513 0.85 -1.3
1,584,026 + DVU1513 0.89 +0.2
1,584,026 + DVU1513 0.89 +0.0
1,584,034 + -0.6
1,584,049 + -0.5
1,584,083 - +0.1
1,584,088 - -0.8
1,584,138 - -1.5
1,584,147 + +1.8
1,584,176 + -0.1
1,584,274 + -0.1

Or see this region's nucleotide sequence