Experiment: MoLS4 with L-Alanine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1509 and DVU1510 overlap by 8 nucleotides DVU1510 and DVU1511 are separated by 108 nucleotides DVU1511 and DVU1513 are separated by 249 nucleotides DVU1513 and DVU1514 are separated by 168 nucleotides
DVU1509: DVU1509 - conserved hypothetical protein (TIGR), at 1,582,050 to 1,582,439
DVU1509
DVU1510: DVU1510 - hypothetical protein (TIGR), at 1,582,432 to 1,582,995
DVU1510
DVU1511: DVU1511 - hypothetical protein (TIGR), at 1,583,104 to 1,583,334
DVU1511
DVU1513: DVU1513 - conserved hypothetical protein (TIGR), at 1,583,584 to 1,584,078
DVU1513
DVU1514: DVU1514 - hypothetical protein (TIGR), at 1,584,247 to 1,585,464
DVU1514
Position (kb)
1583
1584 Strain fitness (log2 ratio)
-1
0
1
2 at 1582.429 kb on + strand at 1582.898 kb on + strand, within DVU1510 at 1583.091 kb on + strand at 1583.195 kb on + strand, within DVU1511 at 1583.281 kb on - strand, within DVU1511 at 1583.293 kb on + strand, within DVU1511 at 1583.434 kb on + strand at 1583.442 kb on - strand at 1583.498 kb on + strand at 1583.513 kb on + strand at 1583.558 kb on + strand at 1583.582 kb on + strand at 1583.582 kb on + strand at 1583.590 kb on - strand at 1583.590 kb on - strand at 1583.702 kb on + strand, within DVU1513 at 1583.703 kb on + strand, within DVU1513 at 1583.710 kb on - strand, within DVU1513 at 1583.837 kb on - strand, within DVU1513 at 1583.898 kb on + strand, within DVU1513 at 1583.906 kb on - strand, within DVU1513 at 1583.947 kb on - strand, within DVU1513 at 1583.998 kb on + strand, within DVU1513 at 1584.002 kb on + strand, within DVU1513 at 1584.006 kb on - strand, within DVU1513 at 1584.026 kb on + strand, within DVU1513 at 1584.026 kb on + strand, within DVU1513 at 1584.034 kb on + strand at 1584.049 kb on + strand at 1584.083 kb on - strand at 1584.088 kb on - strand at 1584.138 kb on - strand at 1584.147 kb on + strand at 1584.176 kb on + strand at 1584.274 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Alanine as nutrient 10mM remove 1,582,429 + -0.4 1,582,898 + DVU1510 0.83 -0.7 1,583,091 + -0.6 1,583,195 + DVU1511 0.39 -1.6 1,583,281 - DVU1511 0.77 -0.9 1,583,293 + DVU1511 0.82 -1.2 1,583,434 + -0.7 1,583,442 - -1.3 1,583,498 + +1.3 1,583,513 + +0.1 1,583,558 + +0.1 1,583,582 + +0.4 1,583,582 + -0.1 1,583,590 - -1.3 1,583,590 - -0.3 1,583,702 + DVU1513 0.24 -0.9 1,583,703 + DVU1513 0.24 -0.4 1,583,710 - DVU1513 0.25 +1.0 1,583,837 - DVU1513 0.51 -1.3 1,583,898 + DVU1513 0.63 -1.0 1,583,906 - DVU1513 0.65 -0.0 1,583,947 - DVU1513 0.73 -0.4 1,583,998 + DVU1513 0.84 -1.5 1,584,002 + DVU1513 0.84 -1.7 1,584,006 - DVU1513 0.85 -1.3 1,584,026 + DVU1513 0.89 +0.2 1,584,026 + DVU1513 0.89 +0.0 1,584,034 + -0.6 1,584,049 + -0.5 1,584,083 - +0.1 1,584,088 - -0.8 1,584,138 - -1.5 1,584,147 + +1.8 1,584,176 + -0.1 1,584,274 + -0.1
Or see this region's nucleotide sequence