Experiment: MoLS4 with L-Alanine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0460 and DVU0461 are separated by 8 nucleotides DVU0461 and DVU0462 are separated by 2 nucleotides DVU0462 and aroA overlap by 1 nucleotides
DVU0460: DVU0460 - predicted phospho-2-dehydro-3-deoxyheptonate aldolase (TIGR), at 527,671 to 528,471
DVU0460
DVU0461: DVU0461 - predicted 3-dehydroquinate synthase (TIGR), at 528,480 to 529,451
DVU0461
DVU0462: DVU0462 - chorismate mutase/prephenate dehydratase (TIGR), at 529,454 to 530,629
DVU0462
DVU0463: aroA - 3-phosphoshikimate 1-carboxyvinyltransferase (TIGR), at 530,629 to 531,948
aroA
Position (kb) 529
530
531 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 528.457 kb on - strand at 528.731 kb on - strand, within DVU0461 at 529.569 kb on + strand at 529.581 kb on + strand, within DVU0462 at 529.589 kb on - strand, within DVU0462 at 529.589 kb on - strand, within DVU0462 at 529.624 kb on + strand, within DVU0462 at 529.657 kb on - strand, within DVU0462 at 529.699 kb on + strand, within DVU0462 at 529.768 kb on + strand, within DVU0462 at 529.861 kb on + strand, within DVU0462 at 529.861 kb on + strand, within DVU0462 at 529.869 kb on - strand, within DVU0462 at 529.926 kb on + strand, within DVU0462 at 529.941 kb on + strand, within DVU0462 at 529.941 kb on + strand, within DVU0462 at 530.011 kb on + strand, within DVU0462 at 530.038 kb on + strand, within DVU0462 at 530.038 kb on + strand, within DVU0462 at 530.092 kb on - strand, within DVU0462 at 530.212 kb on - strand, within DVU0462 at 530.356 kb on + strand, within DVU0462 at 530.356 kb on + strand, within DVU0462 at 530.356 kb on + strand, within DVU0462 at 530.364 kb on - strand, within DVU0462 at 530.404 kb on + strand, within DVU0462 at 530.426 kb on + strand, within DVU0462 at 530.440 kb on - strand, within DVU0462 at 530.514 kb on - strand at 530.518 kb on + strand at 530.526 kb on - strand at 530.561 kb on + strand at 530.585 kb on + strand at 530.620 kb on - strand at 530.620 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Alanine as nutrient 10mM remove 528,457 - -4.2 528,731 - DVU0461 0.26 -3.0 529,569 + -4.2 529,581 + DVU0462 0.11 -0.6 529,589 - DVU0462 0.11 -5.2 529,589 - DVU0462 0.11 -1.8 529,624 + DVU0462 0.14 -4.9 529,657 - DVU0462 0.17 -2.4 529,699 + DVU0462 0.21 -5.2 529,768 + DVU0462 0.27 -5.8 529,861 + DVU0462 0.35 -5.1 529,861 + DVU0462 0.35 -3.4 529,869 - DVU0462 0.35 -1.6 529,926 + DVU0462 0.40 -5.8 529,941 + DVU0462 0.41 -4.9 529,941 + DVU0462 0.41 -3.9 530,011 + DVU0462 0.47 +1.4 530,038 + DVU0462 0.50 -3.4 530,038 + DVU0462 0.50 -5.2 530,092 - DVU0462 0.54 -4.8 530,212 - DVU0462 0.64 -5.0 530,356 + DVU0462 0.77 -6.2 530,356 + DVU0462 0.77 -5.2 530,356 + DVU0462 0.77 -2.8 530,364 - DVU0462 0.77 -0.6 530,404 + DVU0462 0.81 -5.4 530,426 + DVU0462 0.83 -3.2 530,440 - DVU0462 0.84 -4.5 530,514 - -3.0 530,518 + -3.4 530,526 - -0.6 530,561 + -2.0 530,585 + -1.9 530,620 - -1.1 530,620 - -1.2
Or see this region's nucleotide sequence