Experiment: MoLS4 with L-Alanine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0238 and DVU0240 are separated by 535 nucleotides DVU0240 and DVU0241 are separated by 175 nucleotides DVU0241 and DVU0242 are separated by 12 nucleotides
DVU0238: DVU0238 - hypothetical protein (TIGR), at 272,045 to 272,434
DVU0238
DVU0240: DVU0240 - hypothetical protein (TIGR), at 272,970 to 273,377
DVU0240
DVU0241: DVU0241 - MTH1175-like domain family protein (TIGR), at 273,553 to 273,930
DVU0241
DVU0242: DVU0242 - SEC-C motif domain protein (TIGR), at 273,943 to 274,431
DVU0242
Position (kb) 272
273
274 Strain fitness (log2 ratio) -2
-1
0
1 at 272.016 kb on + strand at 272.022 kb on + strand at 272.164 kb on - strand, within DVU0238 at 272.187 kb on + strand, within DVU0238 at 272.243 kb on - strand, within DVU0238 at 272.299 kb on - strand, within DVU0238 at 272.299 kb on - strand, within DVU0238 at 272.309 kb on + strand, within DVU0238 at 272.383 kb on + strand, within DVU0238 at 272.416 kb on + strand at 272.506 kb on - strand at 272.855 kb on + strand at 272.863 kb on - strand at 272.863 kb on - strand at 272.923 kb on + strand at 272.928 kb on + strand at 273.099 kb on - strand, within DVU0240 at 273.135 kb on - strand, within DVU0240 at 273.181 kb on - strand, within DVU0240 at 273.212 kb on + strand, within DVU0240 at 273.220 kb on - strand, within DVU0240 at 273.268 kb on - strand, within DVU0240 at 273.280 kb on - strand, within DVU0240 at 273.336 kb on + strand, within DVU0240 at 273.351 kb on - strand at 273.421 kb on - strand at 273.433 kb on - strand at 273.437 kb on + strand at 273.443 kb on + strand at 273.515 kb on - strand at 273.530 kb on + strand at 273.545 kb on + strand at 273.551 kb on - strand at 273.618 kb on - strand, within DVU0241 at 273.699 kb on + strand, within DVU0241 at 273.752 kb on - strand, within DVU0241 at 273.882 kb on - strand, within DVU0241 at 273.887 kb on - strand, within DVU0241 at 273.889 kb on + strand, within DVU0241 at 273.962 kb on + strand at 273.974 kb on + strand at 273.982 kb on - strand at 273.982 kb on - strand at 274.033 kb on + strand, within DVU0242 at 274.082 kb on - strand, within DVU0242 at 274.145 kb on + strand, within DVU0242 at 274.154 kb on - strand, within DVU0242 at 274.169 kb on + strand, within DVU0242 at 274.169 kb on + strand, within DVU0242 at 274.169 kb on + strand, within DVU0242 at 274.169 kb on + strand, within DVU0242 at 274.169 kb on + strand, within DVU0242 at 274.177 kb on - strand, within DVU0242 at 274.177 kb on - strand, within DVU0242 at 274.177 kb on - strand, within DVU0242 at 274.177 kb on - strand, within DVU0242 at 274.216 kb on + strand, within DVU0242 at 274.253 kb on - strand, within DVU0242
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Alanine as nutrient 10mM remove 272,016 + -0.4 272,022 + -0.3 272,164 - DVU0238 0.31 +0.1 272,187 + DVU0238 0.36 -0.3 272,243 - DVU0238 0.51 -2.5 272,299 - DVU0238 0.65 -0.3 272,299 - DVU0238 0.65 -1.6 272,309 + DVU0238 0.68 +0.1 272,383 + DVU0238 0.87 +0.9 272,416 + -0.6 272,506 - -0.0 272,855 + -0.5 272,863 - -1.2 272,863 - -1.1 272,923 + -0.8 272,928 + -0.5 273,099 - DVU0240 0.32 +0.0 273,135 - DVU0240 0.40 -0.0 273,181 - DVU0240 0.52 -1.2 273,212 + DVU0240 0.59 +0.4 273,220 - DVU0240 0.61 -1.2 273,268 - DVU0240 0.73 +0.4 273,280 - DVU0240 0.76 +0.3 273,336 + DVU0240 0.90 +0.6 273,351 - -0.4 273,421 - -2.4 273,433 - +0.2 273,437 + -0.1 273,443 + -0.1 273,515 - -0.8 273,530 + +0.9 273,545 + +0.4 273,551 - +0.5 273,618 - DVU0241 0.17 -0.9 273,699 + DVU0241 0.39 +0.3 273,752 - DVU0241 0.53 -1.4 273,882 - DVU0241 0.87 +0.0 273,887 - DVU0241 0.88 -0.2 273,889 + DVU0241 0.89 -0.8 273,962 + +0.0 273,974 + +0.5 273,982 - +0.3 273,982 - -1.7 274,033 + DVU0242 0.18 -0.5 274,082 - DVU0242 0.28 +0.2 274,145 + DVU0242 0.41 -0.1 274,154 - DVU0242 0.43 -0.8 274,169 + DVU0242 0.46 -0.2 274,169 + DVU0242 0.46 -0.1 274,169 + DVU0242 0.46 +0.0 274,169 + DVU0242 0.46 -0.6 274,169 + DVU0242 0.46 +0.2 274,177 - DVU0242 0.48 -0.0 274,177 - DVU0242 0.48 +0.6 274,177 - DVU0242 0.48 -1.0 274,177 - DVU0242 0.48 -0.2 274,216 + DVU0242 0.56 -0.8 274,253 - DVU0242 0.63 +0.1
Or see this region's nucleotide sequence