Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0089

Experiment: MoLS4 with L-Alanine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0088 and DVU0089 are separated by 55 nucleotidesDVU0089 and wcaG are separated by 576 nucleotides DVU0088: DVU0088 - Sodium/pantothenate symporter (TIGR), at 112,393 to 113,880 DVU0088 DVU0089: DVU0089 - conserved hypothetical protein (TIGR), at 113,936 to 114,739 DVU0089 DVU0090: wcaG - GDP-fucose synthetase (TIGR), at 115,316 to 116,287 wcaG Position (kb) 113 114 115Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 112.964 kb on + strand, within DVU0088at 113.046 kb on + strand, within DVU0088at 113.058 kb on + strand, within DVU0088at 113.162 kb on - strand, within DVU0088at 113.177 kb on - strand, within DVU0088at 113.177 kb on - strand, within DVU0088at 113.285 kb on + strand, within DVU0088at 113.345 kb on + strand, within DVU0088at 113.353 kb on - strand, within DVU0088at 113.490 kb on + strand, within DVU0088at 113.490 kb on - strand, within DVU0088at 113.490 kb on - strand, within DVU0088at 113.492 kb on + strand, within DVU0088at 113.500 kb on - strand, within DVU0088at 113.500 kb on - strand, within DVU0088at 113.500 kb on - strand, within DVU0088at 113.590 kb on - strand, within DVU0088at 113.602 kb on + strand, within DVU0088at 113.796 kb on - strandat 113.837 kb on - strandat 113.867 kb on - strandat 113.867 kb on - strandat 113.910 kb on + strandat 113.922 kb on + strandat 113.941 kb on - strandat 113.954 kb on + strandat 113.955 kb on + strandat 113.963 kb on - strandat 114.092 kb on + strand, within DVU0089at 114.304 kb on + strand, within DVU0089at 114.351 kb on - strand, within DVU0089at 114.405 kb on - strand, within DVU0089at 114.441 kb on + strand, within DVU0089at 114.464 kb on + strand, within DVU0089at 114.508 kb on + strand, within DVU0089at 114.521 kb on - strand, within DVU0089at 114.600 kb on + strand, within DVU0089at 114.600 kb on + strand, within DVU0089at 114.600 kb on + strand, within DVU0089at 114.608 kb on - strand, within DVU0089at 114.720 kb on + strandat 114.848 kb on + strandat 114.980 kb on - strandat 115.036 kb on + strandat 115.037 kb on - strandat 115.063 kb on - strandat 115.082 kb on - strandat 115.097 kb on - strandat 115.097 kb on - strandat 115.127 kb on - strandat 115.187 kb on - strandat 115.195 kb on + strandat 115.210 kb on - strandat 115.224 kb on + strandat 115.264 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Alanine as nutrient 10mM
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112,964 + DVU0088 0.38 -1.2
113,046 + DVU0088 0.44 -1.5
113,058 + DVU0088 0.45 -0.8
113,162 - DVU0088 0.52 -0.6
113,177 - DVU0088 0.53 +0.1
113,177 - DVU0088 0.53 +0.2
113,285 + DVU0088 0.60 -0.4
113,345 + DVU0088 0.64 -1.8
113,353 - DVU0088 0.65 -1.5
113,490 + DVU0088 0.74 -3.8
113,490 - DVU0088 0.74 -1.0
113,490 - DVU0088 0.74 -0.5
113,492 + DVU0088 0.74 -0.0
113,500 - DVU0088 0.74 +0.7
113,500 - DVU0088 0.74 -1.6
113,500 - DVU0088 0.74 -1.5
113,590 - DVU0088 0.80 -0.4
113,602 + DVU0088 0.81 +0.2
113,796 - -1.1
113,837 - -0.8
113,867 - -0.3
113,867 - -0.6
113,910 + +0.1
113,922 + -0.3
113,941 - -1.8
113,954 + -0.3
113,955 + -0.3
113,963 - -0.3
114,092 + DVU0089 0.19 +0.7
114,304 + DVU0089 0.46 -1.1
114,351 - DVU0089 0.52 -1.2
114,405 - DVU0089 0.58 -0.0
114,441 + DVU0089 0.63 -0.9
114,464 + DVU0089 0.66 -1.8
114,508 + DVU0089 0.71 -0.8
114,521 - DVU0089 0.73 +0.2
114,600 + DVU0089 0.83 +0.5
114,600 + DVU0089 0.83 -0.8
114,600 + DVU0089 0.83 -0.0
114,608 - DVU0089 0.84 -0.8
114,720 + -0.2
114,848 + -0.0
114,980 - -0.2
115,036 + +0.7
115,037 - -0.1
115,063 - +0.4
115,082 - -0.4
115,097 - -1.5
115,097 - -1.6
115,127 - +0.2
115,187 - -0.9
115,195 + -0.5
115,210 - -0.1
115,224 + +0.2
115,264 - -0.8

Or see this region's nucleotide sequence