Experiment: KB with Nonanoic 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4217 and Psyr_4218 are separated by 263 nucleotides Psyr_4218 and Psyr_4219 are separated by 410 nucleotides Psyr_4219 and Psyr_4220 are separated by 13 nucleotides
Psyr_4217: Psyr_4217 - tricorn interacting aminopeptidase F1, Serine peptidase, MEROPS family S33, at 5,022,527 to 5,023,450
_4217
Psyr_4218: Psyr_4218 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 5,023,714 to 5,025,339
_4218
Psyr_4219: Psyr_4219 - GAF, at 5,025,750 to 5,026,250
_4219
Psyr_4220: Psyr_4220 - GCN5-related N-acetyltransferase, at 5,026,264 to 5,026,719
_4220
Position (kb) 5023
5024
5025
5026 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5022.823 kb on + strand, within Psyr_4217 at 5022.824 kb on - strand, within Psyr_4217 at 5022.836 kb on + strand, within Psyr_4217 at 5022.836 kb on + strand, within Psyr_4217 at 5022.836 kb on + strand, within Psyr_4217 at 5022.836 kb on + strand, within Psyr_4217 at 5022.836 kb on + strand, within Psyr_4217 at 5022.837 kb on - strand, within Psyr_4217 at 5022.837 kb on - strand, within Psyr_4217 at 5022.837 kb on - strand, within Psyr_4217 at 5022.837 kb on - strand, within Psyr_4217 at 5023.073 kb on + strand, within Psyr_4217 at 5023.073 kb on + strand, within Psyr_4217 at 5023.073 kb on + strand, within Psyr_4217 at 5023.073 kb on + strand, within Psyr_4217 at 5023.073 kb on + strand, within Psyr_4217 at 5023.073 kb on + strand, within Psyr_4217 at 5023.074 kb on - strand, within Psyr_4217 at 5023.116 kb on + strand, within Psyr_4217 at 5023.116 kb on + strand, within Psyr_4217 at 5023.116 kb on + strand, within Psyr_4217 at 5023.116 kb on + strand, within Psyr_4217 at 5023.117 kb on - strand, within Psyr_4217 at 5023.117 kb on - strand, within Psyr_4217 at 5023.123 kb on + strand, within Psyr_4217 at 5023.123 kb on + strand, within Psyr_4217 at 5023.124 kb on - strand, within Psyr_4217 at 5023.157 kb on + strand, within Psyr_4217 at 5023.158 kb on - strand, within Psyr_4217 at 5023.271 kb on + strand, within Psyr_4217 at 5023.271 kb on + strand, within Psyr_4217 at 5023.271 kb on + strand, within Psyr_4217 at 5023.272 kb on - strand, within Psyr_4217 at 5023.272 kb on - strand, within Psyr_4217 at 5023.272 kb on - strand, within Psyr_4217 at 5023.305 kb on - strand, within Psyr_4217 at 5023.357 kb on + strand, within Psyr_4217 at 5023.357 kb on + strand, within Psyr_4217 at 5023.357 kb on + strand, within Psyr_4217 at 5023.357 kb on + strand, within Psyr_4217 at 5023.358 kb on - strand at 5023.358 kb on - strand at 5023.358 kb on - strand at 5023.358 kb on - strand at 5023.358 kb on - strand at 5023.358 kb on - strand at 5023.358 kb on - strand at 5023.368 kb on + strand at 5023.368 kb on + strand at 5023.368 kb on + strand at 5023.368 kb on + strand at 5023.368 kb on + strand at 5023.368 kb on + strand at 5023.368 kb on + strand at 5023.369 kb on - strand at 5023.369 kb on - strand at 5023.387 kb on + strand at 5023.387 kb on + strand at 5023.388 kb on - strand at 5023.454 kb on + strand at 5023.455 kb on - strand at 5023.498 kb on + strand at 5023.501 kb on + strand at 5023.502 kb on - strand at 5023.534 kb on + strand at 5023.535 kb on - strand at 5023.600 kb on + strand at 5023.601 kb on - strand at 5023.601 kb on - strand at 5023.601 kb on - strand at 5023.601 kb on - strand at 5023.601 kb on - strand at 5023.612 kb on + strand at 5023.612 kb on + strand at 5023.612 kb on + strand at 5023.665 kb on - strand at 5023.678 kb on + strand at 5023.679 kb on - strand at 5023.679 kb on - strand at 5023.679 kb on - strand at 5023.679 kb on - strand at 5023.770 kb on + strand at 5023.770 kb on + strand at 5023.770 kb on + strand at 5023.770 kb on + strand at 5023.770 kb on + strand at 5023.770 kb on + strand at 5023.770 kb on + strand at 5023.771 kb on - strand at 5023.771 kb on - strand at 5023.771 kb on - strand at 5023.771 kb on - strand at 5023.771 kb on - strand at 5023.804 kb on + strand at 5023.804 kb on + strand at 5023.805 kb on - strand at 5023.805 kb on - strand at 5023.808 kb on + strand at 5023.808 kb on + strand at 5023.808 kb on + strand at 5023.808 kb on + strand at 5023.808 kb on + strand at 5023.808 kb on + strand at 5023.808 kb on + strand at 5023.809 kb on - strand at 5023.809 kb on - strand at 5023.809 kb on - strand at 5023.809 kb on - strand at 5023.809 kb on - strand at 5023.809 kb on - strand at 5023.844 kb on + strand at 5023.844 kb on + strand at 5023.844 kb on + strand at 5023.844 kb on + strand at 5023.844 kb on + strand at 5023.844 kb on + strand at 5023.844 kb on + strand at 5023.844 kb on + strand at 5023.844 kb on + strand at 5023.844 kb on + strand at 5023.844 kb on + strand at 5023.844 kb on + strand at 5023.844 kb on + strand at 5023.844 kb on + strand at 5023.845 kb on - strand at 5023.845 kb on - strand at 5023.845 kb on - strand at 5023.845 kb on - strand at 5023.845 kb on - strand at 5023.845 kb on - strand at 5023.845 kb on - strand at 5023.845 kb on - strand at 5023.845 kb on - strand at 5023.845 kb on - strand at 5023.845 kb on - strand at 5023.845 kb on - strand at 5023.845 kb on - strand at 5023.952 kb on + strand, within Psyr_4218 at 5023.953 kb on - strand, within Psyr_4218 at 5024.017 kb on + strand, within Psyr_4218 at 5024.089 kb on + strand, within Psyr_4218 at 5024.089 kb on + strand, within Psyr_4218 at 5024.090 kb on - strand, within Psyr_4218 at 5024.090 kb on - strand, within Psyr_4218 at 5024.090 kb on - strand, within Psyr_4218 at 5024.090 kb on - strand, within Psyr_4218 at 5024.090 kb on - strand, within Psyr_4218 at 5024.090 kb on - strand, within Psyr_4218 at 5024.090 kb on - strand, within Psyr_4218 at 5024.090 kb on - strand, within Psyr_4218 at 5024.189 kb on - strand, within Psyr_4218 at 5024.210 kb on + strand at 5024.266 kb on + strand, within Psyr_4218 at 5024.266 kb on + strand, within Psyr_4218 at 5024.266 kb on + strand, within Psyr_4218 at 5024.267 kb on - strand, within Psyr_4218 at 5024.267 kb on - strand, within Psyr_4218 at 5024.327 kb on + strand, within Psyr_4218 at 5024.670 kb on + strand, within Psyr_4218 at 5024.670 kb on + strand, within Psyr_4218 at 5024.670 kb on + strand, within Psyr_4218 at 5024.670 kb on + strand, within Psyr_4218 at 5024.670 kb on + strand, within Psyr_4218 at 5024.670 kb on + strand, within Psyr_4218 at 5024.670 kb on + strand, within Psyr_4218 at 5024.671 kb on - strand, within Psyr_4218 at 5024.671 kb on - strand, within Psyr_4218 at 5024.671 kb on - strand, within Psyr_4218 at 5024.671 kb on - strand, within Psyr_4218 at 5024.796 kb on + strand, within Psyr_4218 at 5024.797 kb on - strand, within Psyr_4218 at 5024.797 kb on - strand, within Psyr_4218 at 5024.797 kb on - strand, within Psyr_4218 at 5024.971 kb on - strand at 5024.971 kb on - strand, within Psyr_4218 at 5025.191 kb on + strand at 5025.191 kb on + strand at 5025.191 kb on + strand at 5025.192 kb on - strand at 5025.192 kb on - strand at 5025.337 kb on + strand at 5025.337 kb on + strand at 5025.337 kb on + strand at 5025.337 kb on + strand at 5025.337 kb on + strand at 5025.337 kb on + strand at 5025.337 kb on + strand at 5025.338 kb on - strand at 5025.338 kb on - strand at 5025.338 kb on - strand at 5025.338 kb on - strand at 5025.338 kb on - strand at 5025.338 kb on - strand at 5025.338 kb on - strand at 5025.403 kb on + strand at 5025.404 kb on - strand at 5025.404 kb on - strand at 5025.414 kb on + strand at 5025.414 kb on + strand at 5025.450 kb on - strand at 5025.524 kb on + strand at 5025.524 kb on + strand at 5025.524 kb on + strand at 5025.524 kb on + strand at 5025.525 kb on - strand at 5025.525 kb on - strand at 5025.534 kb on - strand at 5025.534 kb on - strand at 5025.534 kb on - strand at 5025.542 kb on + strand at 5025.542 kb on + strand at 5025.543 kb on - strand at 5025.551 kb on - strand at 5025.554 kb on + strand at 5025.554 kb on + strand at 5025.554 kb on + strand at 5025.554 kb on + strand at 5025.554 kb on + strand at 5025.567 kb on + strand at 5025.600 kb on + strand at 5025.600 kb on + strand at 5025.600 kb on + strand at 5025.601 kb on - strand at 5025.615 kb on - strand at 5025.615 kb on - strand at 5025.636 kb on + strand at 5025.636 kb on + strand at 5025.637 kb on - strand at 5025.637 kb on - strand at 5025.645 kb on + strand at 5025.645 kb on + strand at 5025.646 kb on - strand at 5025.646 kb on - strand at 5025.646 kb on - strand at 5025.646 kb on - strand at 5025.661 kb on - strand at 5025.817 kb on + strand, within Psyr_4219 at 5025.818 kb on - strand, within Psyr_4219 at 5025.869 kb on - strand, within Psyr_4219 at 5025.869 kb on - strand, within Psyr_4219 at 5025.900 kb on + strand, within Psyr_4219 at 5025.990 kb on - strand, within Psyr_4219 at 5025.994 kb on + strand, within Psyr_4219 at 5026.023 kb on + strand, within Psyr_4219 at 5026.024 kb on - strand, within Psyr_4219 at 5026.041 kb on - strand, within Psyr_4219 at 5026.043 kb on + strand, within Psyr_4219 at 5026.044 kb on - strand, within Psyr_4219 at 5026.044 kb on - strand, within Psyr_4219 at 5026.044 kb on - strand, within Psyr_4219 at 5026.044 kb on - strand, within Psyr_4219 at 5026.044 kb on - strand, within Psyr_4219 at 5026.065 kb on + strand, within Psyr_4219 at 5026.065 kb on + strand, within Psyr_4219 at 5026.065 kb on + strand, within Psyr_4219 at 5026.065 kb on + strand, within Psyr_4219 at 5026.065 kb on + strand, within Psyr_4219 at 5026.065 kb on + strand, within Psyr_4219 at 5026.065 kb on + strand, within Psyr_4219 at 5026.066 kb on - strand, within Psyr_4219 at 5026.066 kb on - strand, within Psyr_4219 at 5026.066 kb on - strand, within Psyr_4219 at 5026.066 kb on - strand, within Psyr_4219 at 5026.066 kb on - strand, within Psyr_4219 at 5026.066 kb on - strand, within Psyr_4219 at 5026.177 kb on + strand, within Psyr_4219 at 5026.177 kb on + strand, within Psyr_4219 at 5026.177 kb on + strand, within Psyr_4219 at 5026.177 kb on + strand, within Psyr_4219 at 5026.178 kb on - strand, within Psyr_4219 at 5026.206 kb on + strand at 5026.206 kb on + strand at 5026.207 kb on - strand at 5026.215 kb on + strand at 5026.249 kb on - strand at 5026.249 kb on - strand at 5026.296 kb on + strand at 5026.296 kb on + strand at 5026.296 kb on + strand at 5026.297 kb on - strand at 5026.297 kb on - strand at 5026.297 kb on - strand at 5026.297 kb on - strand at 5026.297 kb on - strand at 5026.297 kb on - strand at 5026.297 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nonanoic 10 mM remove 5,022,823 + Psyr_4217 0.32 +0.1 5,022,824 - Psyr_4217 0.32 -2.7 5,022,836 + Psyr_4217 0.33 +0.1 5,022,836 + Psyr_4217 0.33 +0.3 5,022,836 + Psyr_4217 0.33 -0.0 5,022,836 + Psyr_4217 0.33 +0.7 5,022,836 + Psyr_4217 0.33 -0.2 5,022,837 - Psyr_4217 0.34 +0.4 5,022,837 - Psyr_4217 0.34 +1.0 5,022,837 - Psyr_4217 0.34 -0.8 5,022,837 - Psyr_4217 0.34 +0.8 5,023,073 + Psyr_4217 0.59 -0.6 5,023,073 + Psyr_4217 0.59 +2.2 5,023,073 + Psyr_4217 0.59 +0.4 5,023,073 + Psyr_4217 0.59 +0.6 5,023,073 + Psyr_4217 0.59 +0.5 5,023,073 + Psyr_4217 0.59 -1.7 5,023,074 - Psyr_4217 0.59 +0.2 5,023,116 + Psyr_4217 0.64 -0.0 5,023,116 + Psyr_4217 0.64 +0.1 5,023,116 + Psyr_4217 0.64 -0.2 5,023,116 + Psyr_4217 0.64 -1.1 5,023,117 - Psyr_4217 0.64 -0.0 5,023,117 - Psyr_4217 0.64 -0.9 5,023,123 + Psyr_4217 0.65 -1.5 5,023,123 + Psyr_4217 0.65 -1.7 5,023,124 - Psyr_4217 0.65 +0.4 5,023,157 + Psyr_4217 0.68 +0.5 5,023,158 - Psyr_4217 0.68 +0.1 5,023,271 + Psyr_4217 0.81 +0.3 5,023,271 + Psyr_4217 0.81 -0.4 5,023,271 + Psyr_4217 0.81 -0.0 5,023,272 - Psyr_4217 0.81 -0.2 5,023,272 - Psyr_4217 0.81 +1.0 5,023,272 - Psyr_4217 0.81 +0.2 5,023,305 - Psyr_4217 0.84 -1.4 5,023,357 + Psyr_4217 0.90 -0.4 5,023,357 + Psyr_4217 0.90 -0.6 5,023,357 + Psyr_4217 0.90 -0.1 5,023,357 + Psyr_4217 0.90 +0.9 5,023,358 - +0.3 5,023,358 - +0.1 5,023,358 - -0.3 5,023,358 - -0.4 5,023,358 - +0.3 5,023,358 - +0.3 5,023,358 - -1.8 5,023,368 + -0.4 5,023,368 + -0.1 5,023,368 + -0.8 5,023,368 + -0.2 5,023,368 + +0.2 5,023,368 + +0.7 5,023,368 + +1.3 5,023,369 - +3.3 5,023,369 - +0.4 5,023,387 + -2.2 5,023,387 + -0.5 5,023,388 - +0.1 5,023,454 + -1.2 5,023,455 - -0.2 5,023,498 + -0.9 5,023,501 + -2.1 5,023,502 - -0.0 5,023,534 + +0.1 5,023,535 - +0.3 5,023,600 + -1.7 5,023,601 - -2.3 5,023,601 - -0.0 5,023,601 - -0.2 5,023,601 - -0.0 5,023,601 - -1.4 5,023,612 + -0.0 5,023,612 + +0.4 5,023,612 + +0.7 5,023,665 - -0.3 5,023,678 + -0.6 5,023,679 - -0.6 5,023,679 - -0.2 5,023,679 - +0.3 5,023,679 - +0.1 5,023,770 + -0.2 5,023,770 + +0.1 5,023,770 + -1.2 5,023,770 + +0.1 5,023,770 + -2.5 5,023,770 + +0.7 5,023,770 + -0.5 5,023,771 - +1.2 5,023,771 - +0.2 5,023,771 - -0.1 5,023,771 - +0.2 5,023,771 - -1.3 5,023,804 + +0.8 5,023,804 + -0.1 5,023,805 - +1.0 5,023,805 - +1.8 5,023,808 + -0.1 5,023,808 + +0.3 5,023,808 + -2.3 5,023,808 + +1.0 5,023,808 + -1.9 5,023,808 + +0.5 5,023,808 + -1.7 5,023,809 - -2.5 5,023,809 - -0.9 5,023,809 - +1.3 5,023,809 - -0.4 5,023,809 - +0.4 5,023,809 - -1.6 5,023,844 + -0.7 5,023,844 + -1.3 5,023,844 + +1.0 5,023,844 + +0.6 5,023,844 + +0.1 5,023,844 + -0.3 5,023,844 + -0.6 5,023,844 + +1.2 5,023,844 + -0.1 5,023,844 + -1.3 5,023,844 + -0.2 5,023,844 + +0.2 5,023,844 + -0.1 5,023,844 + -0.2 5,023,845 - -0.1 5,023,845 - -0.3 5,023,845 - +0.1 5,023,845 - +1.0 5,023,845 - +0.5 5,023,845 - +1.4 5,023,845 - -2.6 5,023,845 - -0.4 5,023,845 - -0.8 5,023,845 - +0.7 5,023,845 - +0.1 5,023,845 - +0.3 5,023,845 - +1.6 5,023,952 + Psyr_4218 0.15 +1.0 5,023,953 - Psyr_4218 0.15 +0.6 5,024,017 + Psyr_4218 0.19 -0.3 5,024,089 + Psyr_4218 0.23 -0.8 5,024,089 + Psyr_4218 0.23 +0.7 5,024,090 - Psyr_4218 0.23 -0.4 5,024,090 - Psyr_4218 0.23 +0.7 5,024,090 - Psyr_4218 0.23 +1.6 5,024,090 - Psyr_4218 0.23 -0.5 5,024,090 - Psyr_4218 0.23 +1.5 5,024,090 - Psyr_4218 0.23 +0.3 5,024,090 - Psyr_4218 0.23 +1.0 5,024,090 - Psyr_4218 0.23 +1.2 5,024,189 - Psyr_4218 0.29 +1.2 5,024,210 + -1.0 5,024,266 + Psyr_4218 0.34 -0.5 5,024,266 + Psyr_4218 0.34 +0.7 5,024,266 + Psyr_4218 0.34 -0.0 5,024,267 - Psyr_4218 0.34 -0.4 5,024,267 - Psyr_4218 0.34 -0.4 5,024,327 + Psyr_4218 0.38 -1.0 5,024,670 + Psyr_4218 0.59 -0.6 5,024,670 + Psyr_4218 0.59 -1.0 5,024,670 + Psyr_4218 0.59 +1.0 5,024,670 + Psyr_4218 0.59 +0.4 5,024,670 + Psyr_4218 0.59 -2.1 5,024,670 + Psyr_4218 0.59 -0.2 5,024,670 + Psyr_4218 0.59 -1.7 5,024,671 - Psyr_4218 0.59 -0.0 5,024,671 - Psyr_4218 0.59 -0.4 5,024,671 - Psyr_4218 0.59 +0.8 5,024,671 - Psyr_4218 0.59 -2.0 5,024,796 + Psyr_4218 0.67 +0.1 5,024,797 - Psyr_4218 0.67 +0.9 5,024,797 - Psyr_4218 0.67 +0.6 5,024,797 - Psyr_4218 0.67 -0.1 5,024,971 - -0.3 5,024,971 - Psyr_4218 0.77 -2.0 5,025,191 + +1.0 5,025,191 + -0.0 5,025,191 + +1.8 5,025,192 - -0.3 5,025,192 - -0.5 5,025,337 + -0.7 5,025,337 + +0.1 5,025,337 + +1.7 5,025,337 + +1.0 5,025,337 + -0.5 5,025,337 + -0.3 5,025,337 + +0.2 5,025,338 - -0.1 5,025,338 - -2.4 5,025,338 - -2.5 5,025,338 - +0.2 5,025,338 - +0.4 5,025,338 - +0.1 5,025,338 - -1.0 5,025,403 + -0.8 5,025,404 - -0.5 5,025,404 - -1.2 5,025,414 + +1.2 5,025,414 + -0.2 5,025,450 - +0.3 5,025,524 + -0.2 5,025,524 + -0.4 5,025,524 + +0.6 5,025,524 + +0.2 5,025,525 - -0.1 5,025,525 - +1.0 5,025,534 - -0.0 5,025,534 - -0.4 5,025,534 - -0.2 5,025,542 + +0.4 5,025,542 + +0.5 5,025,543 - -0.2 5,025,551 - -0.1 5,025,554 + -0.6 5,025,554 + +1.0 5,025,554 + +2.0 5,025,554 + -0.2 5,025,554 + -1.1 5,025,567 + -0.1 5,025,600 + -1.1 5,025,600 + +2.3 5,025,600 + +1.0 5,025,601 - +1.1 5,025,615 - -0.3 5,025,615 - +0.4 5,025,636 + -0.6 5,025,636 + -0.9 5,025,637 - +2.0 5,025,637 - -0.4 5,025,645 + -0.0 5,025,645 + +2.8 5,025,646 - +0.7 5,025,646 - -0.1 5,025,646 - -0.7 5,025,646 - +0.8 5,025,661 - +0.5 5,025,817 + Psyr_4219 0.13 +0.2 5,025,818 - Psyr_4219 0.14 -0.4 5,025,869 - Psyr_4219 0.24 -0.4 5,025,869 - Psyr_4219 0.24 -1.0 5,025,900 + Psyr_4219 0.30 -0.6 5,025,990 - Psyr_4219 0.48 +0.2 5,025,994 + Psyr_4219 0.49 -0.7 5,026,023 + Psyr_4219 0.54 -2.3 5,026,024 - Psyr_4219 0.55 +1.7 5,026,041 - Psyr_4219 0.58 -2.1 5,026,043 + Psyr_4219 0.58 +0.9 5,026,044 - Psyr_4219 0.59 -0.2 5,026,044 - Psyr_4219 0.59 -0.8 5,026,044 - Psyr_4219 0.59 -0.3 5,026,044 - Psyr_4219 0.59 +1.2 5,026,044 - Psyr_4219 0.59 -0.9 5,026,065 + Psyr_4219 0.63 -0.8 5,026,065 + Psyr_4219 0.63 -1.0 5,026,065 + Psyr_4219 0.63 +0.3 5,026,065 + Psyr_4219 0.63 -1.0 5,026,065 + Psyr_4219 0.63 +1.0 5,026,065 + Psyr_4219 0.63 +0.8 5,026,065 + Psyr_4219 0.63 -0.6 5,026,066 - Psyr_4219 0.63 +0.2 5,026,066 - Psyr_4219 0.63 -0.3 5,026,066 - Psyr_4219 0.63 -0.6 5,026,066 - Psyr_4219 0.63 -1.5 5,026,066 - Psyr_4219 0.63 -1.5 5,026,066 - Psyr_4219 0.63 -0.8 5,026,177 + Psyr_4219 0.85 +0.5 5,026,177 + Psyr_4219 0.85 -1.1 5,026,177 + Psyr_4219 0.85 +0.8 5,026,177 + Psyr_4219 0.85 +0.5 5,026,178 - Psyr_4219 0.85 +1.3 5,026,206 + +2.8 5,026,206 + +0.2 5,026,207 - -0.9 5,026,215 + -0.2 5,026,249 - +0.0 5,026,249 - +0.7 5,026,296 + -0.3 5,026,296 + +2.6 5,026,296 + +0.3 5,026,297 - -1.1 5,026,297 - +1.4 5,026,297 - -0.8 5,026,297 - -0.6 5,026,297 - +1.0 5,026,297 - +0.6 5,026,297 - -0.6
Or see this region's nucleotide sequence