Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3774

Experiment: KB with Nonanoic 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3773 and Psyr_3774 are separated by 113 nucleotidesPsyr_3774 and Psyr_3775 overlap by 11 nucleotides Psyr_3773: Psyr_3773 - GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal, at 4,491,827 to 4,493,011 _3773 Psyr_3774: Psyr_3774 - PAS, at 4,493,125 to 4,494,312 _3774 Psyr_3775: Psyr_3775 - Alpha/beta hydrolase fold protein, at 4,494,302 to 4,495,123 _3775 Position (kb) 4493 4494 4495Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4492.187 kb on + strand, within Psyr_3773at 4492.187 kb on + strand, within Psyr_3773at 4492.187 kb on + strand, within Psyr_3773at 4492.187 kb on + strand, within Psyr_3773at 4492.188 kb on - strand, within Psyr_3773at 4492.256 kb on - strand, within Psyr_3773at 4492.651 kb on + strand, within Psyr_3773at 4492.652 kb on - strand, within Psyr_3773at 4492.696 kb on + strand, within Psyr_3773at 4492.696 kb on + strand, within Psyr_3773at 4492.696 kb on + strand, within Psyr_3773at 4492.696 kb on + strand, within Psyr_3773at 4492.696 kb on + strand, within Psyr_3773at 4492.697 kb on - strand, within Psyr_3773at 4492.697 kb on - strand, within Psyr_3773at 4492.697 kb on - strand, within Psyr_3773at 4492.697 kb on - strand, within Psyr_3773at 4492.697 kb on - strand, within Psyr_3773at 4492.697 kb on - strand, within Psyr_3773at 4492.698 kb on + strand, within Psyr_3773at 4492.698 kb on + strand, within Psyr_3773at 4492.698 kb on + strand, within Psyr_3773at 4492.698 kb on + strand, within Psyr_3773at 4492.698 kb on + strand, within Psyr_3773at 4492.698 kb on + strand, within Psyr_3773at 4492.698 kb on + strand, within Psyr_3773at 4492.698 kb on + strand, within Psyr_3773at 4492.698 kb on + strand, within Psyr_3773at 4492.698 kb on + strand, within Psyr_3773at 4492.698 kb on + strand, within Psyr_3773at 4492.698 kb on + strand, within Psyr_3773at 4492.698 kb on + strand, within Psyr_3773at 4492.698 kb on + strand, within Psyr_3773at 4492.699 kb on - strand, within Psyr_3773at 4492.699 kb on - strand, within Psyr_3773at 4492.699 kb on - strand, within Psyr_3773at 4492.699 kb on - strand, within Psyr_3773at 4492.699 kb on - strand, within Psyr_3773at 4492.699 kb on - strand, within Psyr_3773at 4492.699 kb on - strand, within Psyr_3773at 4492.699 kb on - strand, within Psyr_3773at 4492.699 kb on - strand, within Psyr_3773at 4492.699 kb on - strand, within Psyr_3773at 4492.699 kb on - strand, within Psyr_3773at 4492.699 kb on - strand, within Psyr_3773at 4492.699 kb on - strand, within Psyr_3773at 4492.699 kb on - strand, within Psyr_3773at 4492.713 kb on + strand, within Psyr_3773at 4492.714 kb on - strand, within Psyr_3773at 4492.714 kb on - strand, within Psyr_3773at 4492.714 kb on - strandat 4493.013 kb on + strandat 4493.013 kb on + strandat 4493.013 kb on + strandat 4493.013 kb on + strandat 4493.013 kb on + strandat 4493.013 kb on + strandat 4493.013 kb on + strandat 4493.014 kb on - strandat 4493.014 kb on - strandat 4493.014 kb on - strandat 4493.014 kb on - strandat 4493.014 kb on - strandat 4493.023 kb on - strandat 4493.052 kb on + strandat 4493.053 kb on - strandat 4493.057 kb on + strandat 4493.089 kb on + strandat 4493.090 kb on - strandat 4493.113 kb on + strandat 4493.294 kb on - strand, within Psyr_3774at 4493.306 kb on + strand, within Psyr_3774at 4493.318 kb on - strand, within Psyr_3774at 4493.392 kb on - strand, within Psyr_3774at 4493.420 kb on + strand, within Psyr_3774at 4493.809 kb on - strand, within Psyr_3774at 4493.939 kb on + strand, within Psyr_3774at 4493.939 kb on + strand, within Psyr_3774at 4493.940 kb on - strand, within Psyr_3774at 4493.984 kb on + strand, within Psyr_3774at 4493.996 kb on + strand, within Psyr_3774at 4494.220 kb on + strandat 4494.220 kb on + strandat 4494.220 kb on + strandat 4494.221 kb on - strandat 4494.269 kb on + strandat 4494.269 kb on + strandat 4494.355 kb on + strandat 4494.355 kb on + strandat 4494.355 kb on + strandat 4494.396 kb on - strand, within Psyr_3775at 4494.396 kb on - strand, within Psyr_3775at 4494.396 kb on - strand, within Psyr_3775at 4494.396 kb on - strand, within Psyr_3775at 4494.396 kb on - strand, within Psyr_3775at 4494.396 kb on - strand, within Psyr_3775at 4494.444 kb on + strand, within Psyr_3775at 4494.444 kb on + strand, within Psyr_3775at 4494.444 kb on + strand, within Psyr_3775at 4494.445 kb on - strand, within Psyr_3775at 4494.445 kb on - strand, within Psyr_3775at 4494.675 kb on + strand, within Psyr_3775at 4494.675 kb on + strand, within Psyr_3775at 4494.676 kb on - strand, within Psyr_3775at 4494.676 kb on - strand, within Psyr_3775at 4494.676 kb on - strand, within Psyr_3775at 4494.676 kb on - strand, within Psyr_3775at 4494.735 kb on + strand, within Psyr_3775at 4494.927 kb on + strand, within Psyr_3775at 4494.927 kb on + strand, within Psyr_3775at 4494.927 kb on + strand, within Psyr_3775at 4494.928 kb on - strand, within Psyr_3775at 4494.928 kb on - strand, within Psyr_3775at 4494.928 kb on - strand, within Psyr_3775at 4494.928 kb on - strand, within Psyr_3775at 4494.928 kb on - strand, within Psyr_3775at 4494.928 kb on - strand, within Psyr_3775at 4494.950 kb on + strand, within Psyr_3775at 4495.021 kb on + strand, within Psyr_3775at 4495.021 kb on + strand, within Psyr_3775at 4495.022 kb on - strand, within Psyr_3775at 4495.022 kb on - strand, within Psyr_3775at 4495.124 kb on - strandat 4495.147 kb on + strandat 4495.159 kb on + strandat 4495.159 kb on + strandat 4495.160 kb on - strandat 4495.160 kb on - strandat 4495.160 kb on - strandat 4495.167 kb on + strandat 4495.167 kb on + strandat 4495.168 kb on - strandat 4495.168 kb on - strandat 4495.193 kb on - strandat 4495.213 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nonanoic 10 mM
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4,492,187 + Psyr_3773 0.30 +0.1
4,492,187 + Psyr_3773 0.30 +0.6
4,492,187 + Psyr_3773 0.30 -0.9
4,492,187 + Psyr_3773 0.30 +0.3
4,492,188 - Psyr_3773 0.30 +0.1
4,492,256 - Psyr_3773 0.36 +0.6
4,492,651 + Psyr_3773 0.70 -0.2
4,492,652 - Psyr_3773 0.70 +0.1
4,492,696 + Psyr_3773 0.73 -0.6
4,492,696 + Psyr_3773 0.73 -0.2
4,492,696 + Psyr_3773 0.73 -0.6
4,492,696 + Psyr_3773 0.73 -1.9
4,492,696 + Psyr_3773 0.73 -0.1
4,492,697 - Psyr_3773 0.73 -0.7
4,492,697 - Psyr_3773 0.73 -1.2
4,492,697 - Psyr_3773 0.73 -1.0
4,492,697 - Psyr_3773 0.73 -1.0
4,492,697 - Psyr_3773 0.73 -0.0
4,492,697 - Psyr_3773 0.73 -2.4
4,492,698 + Psyr_3773 0.74 -0.6
4,492,698 + Psyr_3773 0.74 -0.6
4,492,698 + Psyr_3773 0.74 -0.6
4,492,698 + Psyr_3773 0.74 +0.5
4,492,698 + Psyr_3773 0.74 -0.4
4,492,698 + Psyr_3773 0.74 -0.8
4,492,698 + Psyr_3773 0.74 +0.8
4,492,698 + Psyr_3773 0.74 -0.4
4,492,698 + Psyr_3773 0.74 +1.0
4,492,698 + Psyr_3773 0.74 -1.7
4,492,698 + Psyr_3773 0.74 +1.0
4,492,698 + Psyr_3773 0.74 -0.6
4,492,698 + Psyr_3773 0.74 -0.1
4,492,698 + Psyr_3773 0.74 -1.8
4,492,699 - Psyr_3773 0.74 -0.9
4,492,699 - Psyr_3773 0.74 -1.4
4,492,699 - Psyr_3773 0.74 +1.0
4,492,699 - Psyr_3773 0.74 -0.7
4,492,699 - Psyr_3773 0.74 -0.0
4,492,699 - Psyr_3773 0.74 +1.0
4,492,699 - Psyr_3773 0.74 -0.7
4,492,699 - Psyr_3773 0.74 -1.0
4,492,699 - Psyr_3773 0.74 -0.8
4,492,699 - Psyr_3773 0.74 +1.0
4,492,699 - Psyr_3773 0.74 -0.2
4,492,699 - Psyr_3773 0.74 +0.4
4,492,699 - Psyr_3773 0.74 +0.6
4,492,699 - Psyr_3773 0.74 -0.3
4,492,713 + Psyr_3773 0.75 +0.4
4,492,714 - Psyr_3773 0.75 +0.4
4,492,714 - Psyr_3773 0.75 -0.2
4,492,714 - -0.0
4,493,013 + -1.4
4,493,013 + -0.4
4,493,013 + +0.7
4,493,013 + -0.7
4,493,013 + -3.5
4,493,013 + -0.4
4,493,013 + -3.4
4,493,014 - +0.2
4,493,014 - +1.2
4,493,014 - -0.8
4,493,014 - +0.3
4,493,014 - -1.6
4,493,023 - -0.0
4,493,052 + +0.6
4,493,053 - -1.3
4,493,057 + -0.2
4,493,089 + -0.6
4,493,090 - -3.1
4,493,113 + +0.3
4,493,294 - Psyr_3774 0.14 -1.7
4,493,306 + Psyr_3774 0.15 -0.6
4,493,318 - Psyr_3774 0.16 -2.3
4,493,392 - Psyr_3774 0.22 -0.8
4,493,420 + Psyr_3774 0.25 -0.7
4,493,809 - Psyr_3774 0.58 +0.0
4,493,939 + Psyr_3774 0.69 -0.4
4,493,939 + Psyr_3774 0.69 +0.6
4,493,940 - Psyr_3774 0.69 +2.0
4,493,984 + Psyr_3774 0.72 -0.9
4,493,996 + Psyr_3774 0.73 +0.2
4,494,220 + +1.1
4,494,220 + -1.3
4,494,220 + +0.2
4,494,221 - +0.2
4,494,269 + -0.5
4,494,269 + +0.1
4,494,355 + +0.4
4,494,355 + -1.5
4,494,355 + -1.4
4,494,396 - Psyr_3775 0.11 -0.5
4,494,396 - Psyr_3775 0.11 -1.8
4,494,396 - Psyr_3775 0.11 -1.6
4,494,396 - Psyr_3775 0.11 -1.1
4,494,396 - Psyr_3775 0.11 +0.3
4,494,396 - Psyr_3775 0.11 +0.0
4,494,444 + Psyr_3775 0.17 -2.0
4,494,444 + Psyr_3775 0.17 -2.3
4,494,444 + Psyr_3775 0.17 +1.8
4,494,445 - Psyr_3775 0.17 -0.8
4,494,445 - Psyr_3775 0.17 -0.3
4,494,675 + Psyr_3775 0.45 -1.2
4,494,675 + Psyr_3775 0.45 +0.7
4,494,676 - Psyr_3775 0.45 -0.7
4,494,676 - Psyr_3775 0.45 +2.4
4,494,676 - Psyr_3775 0.45 -0.8
4,494,676 - Psyr_3775 0.45 -0.5
4,494,735 + Psyr_3775 0.53 +0.5
4,494,927 + Psyr_3775 0.76 -0.6
4,494,927 + Psyr_3775 0.76 +0.2
4,494,927 + Psyr_3775 0.76 +1.0
4,494,928 - Psyr_3775 0.76 +0.2
4,494,928 - Psyr_3775 0.76 -1.6
4,494,928 - Psyr_3775 0.76 -0.2
4,494,928 - Psyr_3775 0.76 +0.4
4,494,928 - Psyr_3775 0.76 +0.4
4,494,928 - Psyr_3775 0.76 +1.1
4,494,950 + Psyr_3775 0.79 +0.6
4,495,021 + Psyr_3775 0.87 +0.3
4,495,021 + Psyr_3775 0.87 -0.7
4,495,022 - Psyr_3775 0.88 -1.5
4,495,022 - Psyr_3775 0.88 +0.3
4,495,124 - -0.5
4,495,147 + -1.4
4,495,159 + -1.9
4,495,159 + +1.0
4,495,160 - -0.0
4,495,160 - -0.8
4,495,160 - +0.1
4,495,167 + -0.6
4,495,167 + -0.6
4,495,168 - -0.4
4,495,168 - +0.7
4,495,193 - -0.4
4,495,213 - +0.4

Or see this region's nucleotide sequence