Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_005063

Experiment: R2A with Quartz_sand 500 g/L

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Quartz_sand 500 g/L
1,305,615	+		ABIE53_005062	0.55	-1.7
1,305,615	+		ABIE53_005062	0.55	-1.3
1,305,615	+		ABIE53_005062	0.55	+0.2
1,305,615	+		ABIE53_005062	0.55	-0.2
1,305,615	+		ABIE53_005062	0.55	-2.3
1,305,615	+		ABIE53_005062	0.55	+0.5
1,305,615	+		ABIE53_005062	0.55	-0.5
1,305,615	+		ABIE53_005062	0.55	-0.4
1,305,615	+		ABIE53_005062	0.55	-0.4
1,305,616	-		ABIE53_005062	0.55	-0.7
1,305,616	-		ABIE53_005062	0.55	+0.5
1,305,616	-		ABIE53_005062	0.55	-1.5
1,305,616	-		ABIE53_005062	0.55	+2.0
1,305,616	-		ABIE53_005062	0.55	-0.3
1,305,616	-		ABIE53_005062	0.55	-1.1
1,305,616	-		ABIE53_005062	0.55	-1.0
1,305,616	-		ABIE53_005062	0.55	-0.2
1,305,653	-		ABIE53_005062	0.59	-1.0
1,305,663	+		ABIE53_005062	0.60	+0.3
1,305,663	+		ABIE53_005062	0.60	-0.2
1,305,663	+		ABIE53_005062	0.60	+1.5
1,305,663	+		ABIE53_005062	0.60	-0.2
1,305,663	+		ABIE53_005062	0.60	+0.4
1,305,663	+		ABIE53_005062	0.60	+1.5
1,305,663	+		ABIE53_005062	0.60	-0.6
1,305,664	-		ABIE53_005062	0.60	+0.3
1,305,664	-		ABIE53_005062	0.60	-1.8
1,305,664	-		ABIE53_005062	0.60	-1.2
1,305,697	+		ABIE53_005062	0.63	-1.8
1,305,697	+		ABIE53_005062	0.63	+1.2
1,305,697	+		ABIE53_005062	0.63	+1.5
1,305,697	+		ABIE53_005062	0.63	-1.3
1,305,697	+		ABIE53_005062	0.63	-0.1
1,305,697	+		ABIE53_005062	0.63	-0.4
1,305,698	-		ABIE53_005062	0.64	+0.5
1,305,698	-		ABIE53_005062	0.64	-0.7
1,305,698	-		ABIE53_005062	0.64	-1.0
1,305,698	-		ABIE53_005062	0.64	+0.8
1,305,698	-		ABIE53_005062	0.64	-2.5
1,305,698	-		ABIE53_005062	0.64	-0.0
1,305,698	-		ABIE53_005062	0.64	+2.4
1,305,748	-		ABIE53_005062	0.69	+0.5
1,305,748	-		ABIE53_005062	0.69	+0.5
1,305,748	-		ABIE53_005062	0.69	-0.9
1,305,748	-		ABIE53_005062	0.69	-2.2
1,305,808	+		ABIE53_005062	0.75	-0.3
1,305,809	-		ABIE53_005062	0.76	+0.4
1,305,867	+		ABIE53_005062	0.82	+0.5
1,305,867	+		ABIE53_005062	0.82	-0.3
1,305,867	+		ABIE53_005062	0.82	-0.5
1,305,867	+		ABIE53_005062	0.82	+2.3
1,305,867	+		ABIE53_005062	0.82	-1.5
1,305,867	+		ABIE53_005062	0.82	-1.6
1,305,867	+		ABIE53_005062	0.82	-0.0
1,305,867	+		ABIE53_005062	0.82	-1.6
1,305,867	+		ABIE53_005062	0.82	-0.2
1,305,867	+		ABIE53_005062	0.82	-1.3
1,305,867	+		ABIE53_005062	0.82	-0.5
1,305,868	-		ABIE53_005062	0.82	-2.6
1,305,868	-		ABIE53_005062	0.82	-2.8
1,305,868	-		ABIE53_005062	0.82	+2.7
1,305,868	-		ABIE53_005062	0.82	-0.9
1,305,868	-		ABIE53_005062	0.82	-0.3
1,305,868	-		ABIE53_005062	0.82	+1.5
1,305,868	-		ABIE53_005062	0.82	-0.2
1,305,868	-		ABIE53_005062	0.82	-1.5
1,305,868	-		ABIE53_005062	0.82	-1.6
1,305,868	-		ABIE53_005062	0.82	+2.1
1,305,996	+				-0.5
1,305,996	+				+2.0
1,305,996	+				+1.8
1,305,997	-				-2.3
1,306,071	-				-0.9
1,306,132	+				+0.5
1,306,133	-				-1.0
1,306,165	+				+2.1
1,306,165	+				+0.3
1,306,165	+				-0.2
1,306,165	+				+0.8
1,306,165	+				+1.5
1,306,166	-				-1.0
1,306,166	-				-0.1
1,306,166	-				+1.0
1,306,327	+				+1.1
1,306,328	-				-0.0
1,306,328	-				+1.2
1,306,328	-				-0.9
1,306,425	+				+1.5
1,306,425	+				+1.3
1,306,425	+				+0.4
1,306,425	+				-1.0
1,306,426	-				-3.0
1,306,426	-				+0.5
1,306,426	-				-2.0
1,306,426	-				+0.7
1,306,426	-				+0.5
1,306,426	-				+0.5
1,306,426	-				+1.0
1,306,426	-				-0.5
1,306,426	-				-0.3
1,306,501	+				+0.7
1,306,501	+				+2.1
1,306,501	+				-1.0
1,306,502	-				-0.2
1,306,502	-				+1.0
1,306,502	-				-2.0
1,306,502	-				+1.4
1,306,502	-				-0.4
1,306,734	+		ABIE53_005063	0.28	-0.8
1,306,734	+		ABIE53_005063	0.28	-1.4
1,306,734	+		ABIE53_005063	0.28	-0.8
1,306,735	-		ABIE53_005063	0.29	-3.0
1,306,735	-		ABIE53_005063	0.29	-2.0
1,306,735	-		ABIE53_005063	0.29	+2.1
1,306,735	-		ABIE53_005063	0.29	-3.5
1,306,854	-		ABIE53_005063	0.57	+2.1
1,306,865	+		ABIE53_005063	0.59	-0.7
1,306,866	-		ABIE53_005063	0.59	-2.9
1,306,866	-		ABIE53_005063	0.59	-0.9
1,306,867	+		ABIE53_005063	0.60	+0.5
1,306,868	-		ABIE53_005063	0.60	+0.5
1,306,868	-		ABIE53_005063	0.60	-1.0
1,306,893	-		ABIE53_005063	0.66	+1.7
1,306,963	+		ABIE53_005063	0.82	-0.7
1,306,963	+		ABIE53_005063	0.82	-0.2
1,306,963	+		ABIE53_005063	0.82	-1.2
1,306,963	+		ABIE53_005063	0.82	+1.3
1,306,964	-		ABIE53_005063	0.82	-2.2
1,306,964	-		ABIE53_005063	0.82	-0.5
1,306,964	-		ABIE53_005063	0.82	+0.1
1,306,964	-		ABIE53_005063	0.82	+2.9
1,306,964	-		ABIE53_005063	0.82	+0.2
1,307,189	+				-0.6
1,307,190	-				-1.7
1,307,205	+				+0.5
1,307,251	+				-1.0
1,307,348	-				+0.5
1,307,426	+				+0.9
1,307,426	+				-1.0
1,307,427	-				+1.1
1,307,462	+				-0.8
1,307,462	+				-0.6
1,307,462	+				+1.5
1,307,462	+				-0.0
1,307,463	-				-0.5
1,307,463	-				-0.8
1,307,464	+				+0.5
1,307,465	-				-0.5
1,307,473	-				+0.8
1,307,495	+				+2.5
1,307,496	-				+0.8
1,307,496	-				-0.9
1,307,496	-				-0.6
1,307,496	-				-0.1
1,307,546	+				+0.5
1,307,666	+				-1.2
1,307,666	+				+1.5
1,307,666	+				-0.5
1,307,667	-				+0.5
1,307,667	-				-0.8
1,307,667	-				+0.3
1,307,756	+		ABIE53_005064	0.11	+1.1
1,307,757	-		ABIE53_005064	0.11	-2.3
1,308,013	+		ABIE53_005064	0.20	-0.2
1,308,014	-		ABIE53_005064	0.20	+0.4
1,308,022	+		ABIE53_005064	0.20	-0.7
1,308,023	-		ABIE53_005064	0.20	-0.5
1,308,023	-		ABIE53_005064	0.20	-0.0
1,308,023	-		ABIE53_005064	0.20	-0.7