Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1686

Experiment: MoLS4 with L-Alanine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgcvT and DVU1685 are separated by 51 nucleotidesDVU1685 and DVU1686 overlap by 4 nucleotidesDVU1686 and DVU1687 overlap by 4 nucleotidesDVU1687 and DVU1688 overlap by 4 nucleotides DVU1684: gcvT - glycine cleavage system T protein (TIGR), at 1,762,935 to 1,764,065 gcvT DVU1685: DVU1685 - conserved hypothetical protein TIGR00046 (TIGR), at 1,764,117 to 1,764,866 DVU1685 DVU1686: DVU1686 - ATPase, AAA family (TIGR), at 1,764,863 to 1,766,098 DVU1686 DVU1687: DVU1687 - glycosyl transferase, group 2 family protein (TIGR), at 1,766,095 to 1,766,802 DVU1687 DVU1688: DVU1688 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, putative (TIGR), at 1,766,799 to 1,767,608 DVU1688 Position (kb) 1764 1765 1766 1767Strain fitness (log2 ratio) -2 -1 0 1 2at 1764.015 kb on + strandat 1764.124 kb on + strandat 1764.255 kb on + strand, within DVU1685at 1764.331 kb on - strand, within DVU1685at 1764.470 kb on + strand, within DVU1685at 1764.547 kb on - strand, within DVU1685at 1764.580 kb on - strand, within DVU1685at 1764.809 kb on + strandat 1764.905 kb on - strandat 1764.961 kb on - strandat 1765.028 kb on - strand, within DVU1686at 1765.088 kb on + strand, within DVU1686at 1765.275 kb on + strand, within DVU1686at 1765.275 kb on + strand, within DVU1686at 1765.281 kb on - strand, within DVU1686at 1765.283 kb on - strand, within DVU1686at 1765.332 kb on - strand, within DVU1686at 1765.332 kb on - strand, within DVU1686at 1765.332 kb on - strand, within DVU1686at 1765.345 kb on - strand, within DVU1686at 1765.476 kb on + strand, within DVU1686at 1765.591 kb on - strand, within DVU1686at 1765.707 kb on + strand, within DVU1686at 1765.746 kb on + strand, within DVU1686at 1765.922 kb on + strand, within DVU1686at 1765.922 kb on + strand, within DVU1686at 1765.922 kb on + strand, within DVU1686at 1765.922 kb on + strand, within DVU1686at 1765.922 kb on + strand, within DVU1686at 1765.929 kb on + strand, within DVU1686at 1765.930 kb on - strand, within DVU1686at 1765.930 kb on - strand, within DVU1686at 1766.037 kb on - strandat 1766.099 kb on + strandat 1766.109 kb on + strandat 1766.140 kb on - strandat 1766.160 kb on - strandat 1766.259 kb on + strand, within DVU1687at 1766.267 kb on - strand, within DVU1687at 1766.337 kb on + strand, within DVU1687at 1766.505 kb on + strand, within DVU1687at 1766.513 kb on - strand, within DVU1687at 1766.520 kb on - strand, within DVU1687at 1766.539 kb on - strand, within DVU1687at 1766.671 kb on + strand, within DVU1687at 1766.679 kb on - strand, within DVU1687

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Alanine as nutrient 10mM
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1,764,015 + -0.2
1,764,124 + -0.3
1,764,255 + DVU1685 0.18 -1.0
1,764,331 - DVU1685 0.29 +0.4
1,764,470 + DVU1685 0.47 +0.2
1,764,547 - DVU1685 0.57 -1.2
1,764,580 - DVU1685 0.62 +0.1
1,764,809 + -1.1
1,764,905 - -0.1
1,764,961 - -0.9
1,765,028 - DVU1686 0.13 -0.3
1,765,088 + DVU1686 0.18 -1.8
1,765,275 + DVU1686 0.33 -0.4
1,765,275 + DVU1686 0.33 -1.6
1,765,281 - DVU1686 0.34 +0.0
1,765,283 - DVU1686 0.34 -1.4
1,765,332 - DVU1686 0.38 -0.7
1,765,332 - DVU1686 0.38 -1.6
1,765,332 - DVU1686 0.38 +1.5
1,765,345 - DVU1686 0.39 -0.8
1,765,476 + DVU1686 0.50 -0.8
1,765,591 - DVU1686 0.59 -0.4
1,765,707 + DVU1686 0.68 +1.0
1,765,746 + DVU1686 0.71 +1.9
1,765,922 + DVU1686 0.86 -1.8
1,765,922 + DVU1686 0.86 -0.7
1,765,922 + DVU1686 0.86 +0.9
1,765,922 + DVU1686 0.86 -1.0
1,765,922 + DVU1686 0.86 -1.9
1,765,929 + DVU1686 0.86 -0.1
1,765,930 - DVU1686 0.86 +1.9
1,765,930 - DVU1686 0.86 -0.2
1,766,037 - -1.2
1,766,099 + -0.0
1,766,109 + -0.2
1,766,140 - -0.0
1,766,160 - +1.1
1,766,259 + DVU1687 0.23 -0.3
1,766,267 - DVU1687 0.24 -2.0
1,766,337 + DVU1687 0.34 +0.0
1,766,505 + DVU1687 0.58 -1.3
1,766,513 - DVU1687 0.59 -0.1
1,766,520 - DVU1687 0.60 -0.5
1,766,539 - DVU1687 0.63 -0.2
1,766,671 + DVU1687 0.81 +0.0
1,766,679 - DVU1687 0.82 -0.6

Or see this region's nucleotide sequence