Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4912

Experiment: KB with Plumbagin 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4911 and Psyr_4912 are separated by 13 nucleotidesPsyr_4912 and Psyr_4913 are separated by 66 nucleotidesPsyr_4913 and Psyr_4914 overlap by 4 nucleotides Psyr_4911: Psyr_4911 - amino acid ABC transporter ATP-binding protein, PAAT family, at 5,823,615 to 5,824,388 _4911 Psyr_4912: Psyr_4912 - amino acid ABC transporter substrate-binding protein, PAAT family, at 5,824,402 to 5,825,166 _4912 Psyr_4913: Psyr_4913 - amino acid ABC transporter membrane protein 1, PAAT family, at 5,825,233 to 5,825,928 _4913 Psyr_4914: Psyr_4914 - amino acid ABC transporter membrane protein 2, PAAT family, at 5,825,925 to 5,826,614 _4914 Position (kb) 5824 5825 5826Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 5823.445 kb on + strandat 5823.445 kb on + strandat 5823.533 kb on + strandat 5823.533 kb on + strandat 5823.533 kb on + strandat 5823.533 kb on + strandat 5823.533 kb on + strandat 5823.533 kb on + strandat 5823.533 kb on + strandat 5823.533 kb on + strandat 5823.533 kb on + strandat 5823.533 kb on + strandat 5823.534 kb on - strandat 5823.534 kb on - strandat 5823.534 kb on - strandat 5823.534 kb on - strandat 5823.534 kb on - strandat 5823.534 kb on - strandat 5823.534 kb on - strandat 5823.534 kb on - strandat 5823.534 kb on - strandat 5823.534 kb on - strandat 5823.534 kb on - strandat 5823.564 kb on + strandat 5823.565 kb on - strandat 5823.565 kb on - strandat 5823.565 kb on - strandat 5823.689 kb on + strandat 5823.689 kb on + strandat 5823.689 kb on + strandat 5823.690 kb on - strandat 5823.690 kb on - strandat 5823.690 kb on - strandat 5823.721 kb on + strand, within Psyr_4911at 5824.036 kb on + strand, within Psyr_4911at 5824.036 kb on + strand, within Psyr_4911at 5824.036 kb on + strand, within Psyr_4911at 5824.036 kb on + strand, within Psyr_4911at 5824.036 kb on + strand, within Psyr_4911at 5824.036 kb on + strand, within Psyr_4911at 5824.036 kb on + strand, within Psyr_4911at 5824.036 kb on + strand, within Psyr_4911at 5824.037 kb on - strand, within Psyr_4911at 5824.037 kb on - strand, within Psyr_4911at 5824.037 kb on - strand, within Psyr_4911at 5824.037 kb on - strand, within Psyr_4911at 5824.041 kb on - strand, within Psyr_4911at 5824.062 kb on + strand, within Psyr_4911at 5824.112 kb on + strand, within Psyr_4911at 5824.270 kb on + strand, within Psyr_4911at 5824.271 kb on - strand, within Psyr_4911at 5824.271 kb on - strand, within Psyr_4911at 5824.333 kb on + strandat 5824.333 kb on + strandat 5824.334 kb on - strandat 5824.334 kb on - strandat 5824.334 kb on - strandat 5824.334 kb on - strandat 5824.334 kb on - strandat 5824.541 kb on + strand, within Psyr_4912at 5824.552 kb on + strand, within Psyr_4912at 5824.721 kb on - strand, within Psyr_4912at 5824.723 kb on + strand, within Psyr_4912at 5824.724 kb on - strand, within Psyr_4912at 5824.888 kb on + strand, within Psyr_4912at 5824.888 kb on + strand, within Psyr_4912at 5824.888 kb on + strand, within Psyr_4912at 5824.888 kb on + strand, within Psyr_4912at 5824.889 kb on - strand, within Psyr_4912at 5824.889 kb on - strand, within Psyr_4912at 5824.957 kb on + strand, within Psyr_4912at 5824.957 kb on + strand, within Psyr_4912at 5824.957 kb on + strand, within Psyr_4912at 5824.957 kb on + strand, within Psyr_4912at 5824.957 kb on + strand, within Psyr_4912at 5824.957 kb on + strand, within Psyr_4912at 5824.957 kb on + strand, within Psyr_4912at 5824.957 kb on + strand, within Psyr_4912at 5824.957 kb on + strand, within Psyr_4912at 5824.957 kb on + strand, within Psyr_4912at 5824.957 kb on + strand, within Psyr_4912at 5824.957 kb on + strand, within Psyr_4912at 5824.958 kb on - strand, within Psyr_4912at 5824.958 kb on - strand, within Psyr_4912at 5824.958 kb on - strand, within Psyr_4912at 5824.958 kb on - strand, within Psyr_4912at 5825.122 kb on + strandat 5825.122 kb on + strandat 5825.122 kb on + strandat 5825.122 kb on + strandat 5825.123 kb on - strandat 5825.123 kb on - strandat 5825.123 kb on - strandat 5825.123 kb on - strandat 5825.123 kb on - strandat 5825.123 kb on - strandat 5825.123 kb on - strandat 5825.123 kb on - strandat 5825.123 kb on - strandat 5825.123 kb on - strandat 5825.123 kb on - strandat 5825.143 kb on + strandat 5825.143 kb on + strandat 5825.143 kb on + strandat 5825.143 kb on + strandat 5825.143 kb on + strandat 5825.143 kb on + strandat 5825.143 kb on + strandat 5825.143 kb on + strandat 5825.144 kb on - strandat 5825.144 kb on - strandat 5825.144 kb on - strandat 5825.144 kb on - strandat 5825.144 kb on - strandat 5825.392 kb on - strand, within Psyr_4913at 5825.392 kb on - strand, within Psyr_4913at 5825.395 kb on + strand, within Psyr_4913at 5825.395 kb on + strand, within Psyr_4913at 5825.395 kb on + strand, within Psyr_4913at 5825.395 kb on + strand, within Psyr_4913at 5825.395 kb on + strand, within Psyr_4913at 5825.396 kb on - strand, within Psyr_4913at 5825.396 kb on - strand, within Psyr_4913at 5825.396 kb on - strand, within Psyr_4913at 5825.446 kb on + strand, within Psyr_4913at 5825.446 kb on + strand, within Psyr_4913at 5825.446 kb on + strand, within Psyr_4913at 5825.821 kb on + strand, within Psyr_4913at 5825.821 kb on + strand, within Psyr_4913at 5825.821 kb on + strand, within Psyr_4913at 5825.821 kb on + strand, within Psyr_4913at 5825.821 kb on + strand, within Psyr_4913at 5825.821 kb on + strand, within Psyr_4913at 5825.821 kb on + strand, within Psyr_4913at 5825.821 kb on + strand, within Psyr_4913at 5825.822 kb on - strand, within Psyr_4913at 5825.822 kb on - strand, within Psyr_4913at 5825.822 kb on - strand, within Psyr_4913at 5825.822 kb on - strand, within Psyr_4913at 5825.822 kb on - strand, within Psyr_4913at 5825.822 kb on - strand, within Psyr_4913at 5825.822 kb on - strand, within Psyr_4913at 5825.822 kb on - strand, within Psyr_4913at 5825.822 kb on - strand, within Psyr_4913at 5825.822 kb on - strand, within Psyr_4913at 5825.822 kb on - strand, within Psyr_4913at 5825.822 kb on - strand, within Psyr_4913at 5825.842 kb on + strand, within Psyr_4913at 5825.842 kb on + strand, within Psyr_4913at 5825.842 kb on + strand, within Psyr_4913at 5825.842 kb on + strand, within Psyr_4913at 5825.842 kb on + strand, within Psyr_4913at 5825.842 kb on + strand, within Psyr_4913at 5825.842 kb on + strand, within Psyr_4913at 5825.843 kb on - strand, within Psyr_4913at 5825.843 kb on - strand, within Psyr_4913at 5825.843 kb on - strand, within Psyr_4913at 5825.843 kb on - strand, within Psyr_4913at 5825.878 kb on + strandat 5825.878 kb on + strandat 5825.878 kb on + strandat 5825.878 kb on + strandat 5825.878 kb on + strandat 5825.878 kb on + strandat 5825.878 kb on + strandat 5825.878 kb on + strandat 5825.878 kb on + strandat 5825.878 kb on + strandat 5825.878 kb on + strandat 5825.878 kb on + strandat 5825.878 kb on + strandat 5825.878 kb on + strandat 5825.879 kb on - strandat 5825.879 kb on - strandat 5825.879 kb on - strandat 5825.879 kb on - strandat 5825.879 kb on - strandat 5825.879 kb on - strandat 5825.879 kb on - strandat 5825.879 kb on - strandat 5825.879 kb on - strandat 5825.879 kb on - strandat 5825.879 kb on - strandat 5826.090 kb on + strand, within Psyr_4914at 5826.090 kb on + strand, within Psyr_4914at 5826.090 kb on + strand, within Psyr_4914at 5826.090 kb on + strand, within Psyr_4914at 5826.090 kb on + strand, within Psyr_4914at 5826.090 kb on + strand, within Psyr_4914at 5826.090 kb on + strand, within Psyr_4914at 5826.091 kb on - strand, within Psyr_4914at 5826.091 kb on - strand, within Psyr_4914at 5826.091 kb on - strand, within Psyr_4914at 5826.091 kb on - strand, within Psyr_4914at 5826.091 kb on - strand, within Psyr_4914at 5826.091 kb on - strand, within Psyr_4914at 5826.091 kb on - strand, within Psyr_4914at 5826.091 kb on - strand, within Psyr_4914at 5826.091 kb on - strand, within Psyr_4914at 5826.091 kb on - strand, within Psyr_4914at 5826.091 kb on - strand, within Psyr_4914at 5826.141 kb on + strand, within Psyr_4914at 5826.142 kb on - strand, within Psyr_4914at 5826.142 kb on - strand, within Psyr_4914at 5826.142 kb on - strand, within Psyr_4914at 5826.144 kb on + strand, within Psyr_4914

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Plumbagin 10 mM
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5,823,445 + +0.9
5,823,445 + -1.9
5,823,533 + -3.4
5,823,533 + -1.0
5,823,533 + -1.1
5,823,533 + +1.2
5,823,533 + +1.5
5,823,533 + +2.2
5,823,533 + +1.6
5,823,533 + +0.3
5,823,533 + -0.8
5,823,533 + +1.0
5,823,534 - -0.4
5,823,534 - +0.5
5,823,534 - -0.4
5,823,534 - -2.4
5,823,534 - +0.5
5,823,534 - +0.4
5,823,534 - +2.7
5,823,534 - -0.6
5,823,534 - -0.9
5,823,534 - +0.3
5,823,534 - -0.7
5,823,564 + +1.1
5,823,565 - -3.9
5,823,565 - -1.4
5,823,565 - +0.2
5,823,689 + +0.2
5,823,689 + -0.2
5,823,689 + +0.7
5,823,690 - +0.4
5,823,690 - +0.2
5,823,690 - -1.3
5,823,721 + Psyr_4911 0.14 -3.2
5,824,036 + Psyr_4911 0.54 -3.5
5,824,036 + Psyr_4911 0.54 +0.2
5,824,036 + Psyr_4911 0.54 +0.6
5,824,036 + Psyr_4911 0.54 -2.1
5,824,036 + Psyr_4911 0.54 +0.3
5,824,036 + Psyr_4911 0.54 -0.8
5,824,036 + Psyr_4911 0.54 -3.5
5,824,036 + Psyr_4911 0.54 -0.6
5,824,037 - Psyr_4911 0.55 -1.8
5,824,037 - Psyr_4911 0.55 +0.0
5,824,037 - Psyr_4911 0.55 -0.4
5,824,037 - Psyr_4911 0.55 -2.0
5,824,041 - Psyr_4911 0.55 -0.4
5,824,062 + Psyr_4911 0.58 -0.6
5,824,112 + Psyr_4911 0.64 -0.5
5,824,270 + Psyr_4911 0.85 +0.1
5,824,271 - Psyr_4911 0.85 -2.5
5,824,271 - Psyr_4911 0.85 -0.8
5,824,333 + +0.7
5,824,333 + +1.0
5,824,334 - -3.0
5,824,334 - -0.8
5,824,334 - -1.8
5,824,334 - -2.8
5,824,334 - +0.2
5,824,541 + Psyr_4912 0.18 -2.4
5,824,552 + Psyr_4912 0.20 -0.4
5,824,721 - Psyr_4912 0.42 -2.9
5,824,723 + Psyr_4912 0.42 -1.0
5,824,724 - Psyr_4912 0.42 -0.7
5,824,888 + Psyr_4912 0.64 -1.7
5,824,888 + Psyr_4912 0.64 +0.6
5,824,888 + Psyr_4912 0.64 -1.7
5,824,888 + Psyr_4912 0.64 -1.0
5,824,889 - Psyr_4912 0.64 -0.9
5,824,889 - Psyr_4912 0.64 -1.9
5,824,957 + Psyr_4912 0.73 -1.4
5,824,957 + Psyr_4912 0.73 -1.2
5,824,957 + Psyr_4912 0.73 -3.6
5,824,957 + Psyr_4912 0.73 -0.7
5,824,957 + Psyr_4912 0.73 -2.1
5,824,957 + Psyr_4912 0.73 -0.8
5,824,957 + Psyr_4912 0.73 -0.4
5,824,957 + Psyr_4912 0.73 -2.0
5,824,957 + Psyr_4912 0.73 -3.2
5,824,957 + Psyr_4912 0.73 -1.9
5,824,957 + Psyr_4912 0.73 -3.1
5,824,957 + Psyr_4912 0.73 -4.0
5,824,958 - Psyr_4912 0.73 -1.7
5,824,958 - Psyr_4912 0.73 -2.5
5,824,958 - Psyr_4912 0.73 -0.9
5,824,958 - Psyr_4912 0.73 +0.7
5,825,122 + -0.2
5,825,122 + -0.8
5,825,122 + -4.7
5,825,122 + +1.2
5,825,123 - -1.6
5,825,123 - +0.2
5,825,123 - +1.2
5,825,123 - -2.5
5,825,123 - -1.4
5,825,123 - -1.4
5,825,123 - -2.9
5,825,123 - -0.2
5,825,123 - +0.0
5,825,123 - -1.5
5,825,123 - -1.4
5,825,143 + -2.2
5,825,143 + -1.7
5,825,143 + -3.7
5,825,143 + -0.9
5,825,143 + -0.2
5,825,143 + -1.7
5,825,143 + -0.8
5,825,143 + -2.5
5,825,144 - -3.7
5,825,144 - -1.8
5,825,144 - -2.5
5,825,144 - -0.9
5,825,144 - -1.8
5,825,392 - Psyr_4913 0.23 -0.4
5,825,392 - Psyr_4913 0.23 +0.4
5,825,395 + Psyr_4913 0.23 +0.4
5,825,395 + Psyr_4913 0.23 +4.4
5,825,395 + Psyr_4913 0.23 +1.1
5,825,395 + Psyr_4913 0.23 +2.7
5,825,395 + Psyr_4913 0.23 -0.3
5,825,396 - Psyr_4913 0.23 -0.8
5,825,396 - Psyr_4913 0.23 -0.4
5,825,396 - Psyr_4913 0.23 -0.7
5,825,446 + Psyr_4913 0.31 -3.6
5,825,446 + Psyr_4913 0.31 +0.4
5,825,446 + Psyr_4913 0.31 +0.0
5,825,821 + Psyr_4913 0.84 -0.8
5,825,821 + Psyr_4913 0.84 -0.8
5,825,821 + Psyr_4913 0.84 +0.8
5,825,821 + Psyr_4913 0.84 +0.2
5,825,821 + Psyr_4913 0.84 -0.4
5,825,821 + Psyr_4913 0.84 -0.3
5,825,821 + Psyr_4913 0.84 -1.1
5,825,821 + Psyr_4913 0.84 -0.1
5,825,822 - Psyr_4913 0.85 -0.1
5,825,822 - Psyr_4913 0.85 +0.4
5,825,822 - Psyr_4913 0.85 -0.6
5,825,822 - Psyr_4913 0.85 +1.6
5,825,822 - Psyr_4913 0.85 +2.0
5,825,822 - Psyr_4913 0.85 -0.8
5,825,822 - Psyr_4913 0.85 -0.8
5,825,822 - Psyr_4913 0.85 -0.7
5,825,822 - Psyr_4913 0.85 -1.1
5,825,822 - Psyr_4913 0.85 -1.4
5,825,822 - Psyr_4913 0.85 +3.8
5,825,822 - Psyr_4913 0.85 +0.9
5,825,842 + Psyr_4913 0.88 +1.4
5,825,842 + Psyr_4913 0.88 -0.4
5,825,842 + Psyr_4913 0.88 +0.2
5,825,842 + Psyr_4913 0.88 +0.5
5,825,842 + Psyr_4913 0.88 +2.2
5,825,842 + Psyr_4913 0.88 +1.1
5,825,842 + Psyr_4913 0.88 -1.8
5,825,843 - Psyr_4913 0.88 +1.0
5,825,843 - Psyr_4913 0.88 +0.8
5,825,843 - Psyr_4913 0.88 -1.4
5,825,843 - Psyr_4913 0.88 +0.0
5,825,878 + +1.8
5,825,878 + +0.0
5,825,878 + -0.5
5,825,878 + -1.0
5,825,878 + +0.3
5,825,878 + +0.3
5,825,878 + -1.1
5,825,878 + +0.0
5,825,878 + -1.9
5,825,878 + +1.7
5,825,878 + +0.6
5,825,878 + +0.3
5,825,878 + -0.2
5,825,878 + +0.3
5,825,879 - +0.2
5,825,879 - +0.2
5,825,879 - +0.8
5,825,879 - +1.2
5,825,879 - -1.2
5,825,879 - +3.1
5,825,879 - +1.2
5,825,879 - -0.0
5,825,879 - +1.1
5,825,879 - +0.7
5,825,879 - -2.1
5,826,090 + Psyr_4914 0.24 +2.4
5,826,090 + Psyr_4914 0.24 +0.4
5,826,090 + Psyr_4914 0.24 +0.5
5,826,090 + Psyr_4914 0.24 +2.8
5,826,090 + Psyr_4914 0.24 -2.1
5,826,090 + Psyr_4914 0.24 -1.1
5,826,090 + Psyr_4914 0.24 -2.3
5,826,091 - Psyr_4914 0.24 +1.4
5,826,091 - Psyr_4914 0.24 +2.2
5,826,091 - Psyr_4914 0.24 +0.5
5,826,091 - Psyr_4914 0.24 -1.5
5,826,091 - Psyr_4914 0.24 +0.4
5,826,091 - Psyr_4914 0.24 -0.6
5,826,091 - Psyr_4914 0.24 -2.6
5,826,091 - Psyr_4914 0.24 -0.8
5,826,091 - Psyr_4914 0.24 -0.8
5,826,091 - Psyr_4914 0.24 -0.9
5,826,091 - Psyr_4914 0.24 +0.2
5,826,141 + Psyr_4914 0.31 +1.3
5,826,142 - Psyr_4914 0.31 -0.2
5,826,142 - Psyr_4914 0.31 +0.1
5,826,142 - Psyr_4914 0.31 -1.3
5,826,144 + Psyr_4914 0.32 -0.8

Or see this region's nucleotide sequence