Experiment: KB with Plumbagin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4911 and Psyr_4912 are separated by 13 nucleotides Psyr_4912 and Psyr_4913 are separated by 66 nucleotides Psyr_4913 and Psyr_4914 overlap by 4 nucleotides
Psyr_4911: Psyr_4911 - amino acid ABC transporter ATP-binding protein, PAAT family, at 5,823,615 to 5,824,388
_4911
Psyr_4912: Psyr_4912 - amino acid ABC transporter substrate-binding protein, PAAT family, at 5,824,402 to 5,825,166
_4912
Psyr_4913: Psyr_4913 - amino acid ABC transporter membrane protein 1, PAAT family, at 5,825,233 to 5,825,928
_4913
Psyr_4914: Psyr_4914 - amino acid ABC transporter membrane protein 2, PAAT family, at 5,825,925 to 5,826,614
_4914
Position (kb) 5824
5825
5826 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 5823.445 kb on + strand at 5823.445 kb on + strand at 5823.533 kb on + strand at 5823.533 kb on + strand at 5823.533 kb on + strand at 5823.533 kb on + strand at 5823.533 kb on + strand at 5823.533 kb on + strand at 5823.533 kb on + strand at 5823.533 kb on + strand at 5823.533 kb on + strand at 5823.533 kb on + strand at 5823.534 kb on - strand at 5823.534 kb on - strand at 5823.534 kb on - strand at 5823.534 kb on - strand at 5823.534 kb on - strand at 5823.534 kb on - strand at 5823.534 kb on - strand at 5823.534 kb on - strand at 5823.534 kb on - strand at 5823.534 kb on - strand at 5823.534 kb on - strand at 5823.564 kb on + strand at 5823.565 kb on - strand at 5823.565 kb on - strand at 5823.565 kb on - strand at 5823.689 kb on + strand at 5823.689 kb on + strand at 5823.689 kb on + strand at 5823.690 kb on - strand at 5823.690 kb on - strand at 5823.690 kb on - strand at 5823.721 kb on + strand, within Psyr_4911 at 5824.036 kb on + strand, within Psyr_4911 at 5824.036 kb on + strand, within Psyr_4911 at 5824.036 kb on + strand, within Psyr_4911 at 5824.036 kb on + strand, within Psyr_4911 at 5824.036 kb on + strand, within Psyr_4911 at 5824.036 kb on + strand, within Psyr_4911 at 5824.036 kb on + strand, within Psyr_4911 at 5824.036 kb on + strand, within Psyr_4911 at 5824.037 kb on - strand, within Psyr_4911 at 5824.037 kb on - strand, within Psyr_4911 at 5824.037 kb on - strand, within Psyr_4911 at 5824.037 kb on - strand, within Psyr_4911 at 5824.041 kb on - strand, within Psyr_4911 at 5824.062 kb on + strand, within Psyr_4911 at 5824.112 kb on + strand, within Psyr_4911 at 5824.270 kb on + strand, within Psyr_4911 at 5824.271 kb on - strand, within Psyr_4911 at 5824.271 kb on - strand, within Psyr_4911 at 5824.333 kb on + strand at 5824.333 kb on + strand at 5824.334 kb on - strand at 5824.334 kb on - strand at 5824.334 kb on - strand at 5824.334 kb on - strand at 5824.334 kb on - strand at 5824.541 kb on + strand, within Psyr_4912 at 5824.552 kb on + strand, within Psyr_4912 at 5824.721 kb on - strand, within Psyr_4912 at 5824.723 kb on + strand, within Psyr_4912 at 5824.724 kb on - strand, within Psyr_4912 at 5824.888 kb on + strand, within Psyr_4912 at 5824.888 kb on + strand, within Psyr_4912 at 5824.888 kb on + strand, within Psyr_4912 at 5824.888 kb on + strand, within Psyr_4912 at 5824.889 kb on - strand, within Psyr_4912 at 5824.889 kb on - strand, within Psyr_4912 at 5824.957 kb on + strand, within Psyr_4912 at 5824.957 kb on + strand, within Psyr_4912 at 5824.957 kb on + strand, within Psyr_4912 at 5824.957 kb on + strand, within Psyr_4912 at 5824.957 kb on + strand, within Psyr_4912 at 5824.957 kb on + strand, within Psyr_4912 at 5824.957 kb on + strand, within Psyr_4912 at 5824.957 kb on + strand, within Psyr_4912 at 5824.957 kb on + strand, within Psyr_4912 at 5824.957 kb on + strand, within Psyr_4912 at 5824.957 kb on + strand, within Psyr_4912 at 5824.957 kb on + strand, within Psyr_4912 at 5824.958 kb on - strand, within Psyr_4912 at 5824.958 kb on - strand, within Psyr_4912 at 5824.958 kb on - strand, within Psyr_4912 at 5824.958 kb on - strand, within Psyr_4912 at 5825.122 kb on + strand at 5825.122 kb on + strand at 5825.122 kb on + strand at 5825.122 kb on + strand at 5825.123 kb on - strand at 5825.123 kb on - strand at 5825.123 kb on - strand at 5825.123 kb on - strand at 5825.123 kb on - strand at 5825.123 kb on - strand at 5825.123 kb on - strand at 5825.123 kb on - strand at 5825.123 kb on - strand at 5825.123 kb on - strand at 5825.123 kb on - strand at 5825.143 kb on + strand at 5825.143 kb on + strand at 5825.143 kb on + strand at 5825.143 kb on + strand at 5825.143 kb on + strand at 5825.143 kb on + strand at 5825.143 kb on + strand at 5825.143 kb on + strand at 5825.144 kb on - strand at 5825.144 kb on - strand at 5825.144 kb on - strand at 5825.144 kb on - strand at 5825.144 kb on - strand at 5825.392 kb on - strand, within Psyr_4913 at 5825.392 kb on - strand, within Psyr_4913 at 5825.395 kb on + strand, within Psyr_4913 at 5825.395 kb on + strand, within Psyr_4913 at 5825.395 kb on + strand, within Psyr_4913 at 5825.395 kb on + strand, within Psyr_4913 at 5825.395 kb on + strand, within Psyr_4913 at 5825.396 kb on - strand, within Psyr_4913 at 5825.396 kb on - strand, within Psyr_4913 at 5825.396 kb on - strand, within Psyr_4913 at 5825.446 kb on + strand, within Psyr_4913 at 5825.446 kb on + strand, within Psyr_4913 at 5825.446 kb on + strand, within Psyr_4913 at 5825.821 kb on + strand, within Psyr_4913 at 5825.821 kb on + strand, within Psyr_4913 at 5825.821 kb on + strand, within Psyr_4913 at 5825.821 kb on + strand, within Psyr_4913 at 5825.821 kb on + strand, within Psyr_4913 at 5825.821 kb on + strand, within Psyr_4913 at 5825.821 kb on + strand, within Psyr_4913 at 5825.821 kb on + strand, within Psyr_4913 at 5825.822 kb on - strand, within Psyr_4913 at 5825.822 kb on - strand, within Psyr_4913 at 5825.822 kb on - strand, within Psyr_4913 at 5825.822 kb on - strand, within Psyr_4913 at 5825.822 kb on - strand, within Psyr_4913 at 5825.822 kb on - strand, within Psyr_4913 at 5825.822 kb on - strand, within Psyr_4913 at 5825.822 kb on - strand, within Psyr_4913 at 5825.822 kb on - strand, within Psyr_4913 at 5825.822 kb on - strand, within Psyr_4913 at 5825.822 kb on - strand, within Psyr_4913 at 5825.822 kb on - strand, within Psyr_4913 at 5825.842 kb on + strand, within Psyr_4913 at 5825.842 kb on + strand, within Psyr_4913 at 5825.842 kb on + strand, within Psyr_4913 at 5825.842 kb on + strand, within Psyr_4913 at 5825.842 kb on + strand, within Psyr_4913 at 5825.842 kb on + strand, within Psyr_4913 at 5825.842 kb on + strand, within Psyr_4913 at 5825.843 kb on - strand, within Psyr_4913 at 5825.843 kb on - strand, within Psyr_4913 at 5825.843 kb on - strand, within Psyr_4913 at 5825.843 kb on - strand, within Psyr_4913 at 5825.878 kb on + strand at 5825.878 kb on + strand at 5825.878 kb on + strand at 5825.878 kb on + strand at 5825.878 kb on + strand at 5825.878 kb on + strand at 5825.878 kb on + strand at 5825.878 kb on + strand at 5825.878 kb on + strand at 5825.878 kb on + strand at 5825.878 kb on + strand at 5825.878 kb on + strand at 5825.878 kb on + strand at 5825.878 kb on + strand at 5825.879 kb on - strand at 5825.879 kb on - strand at 5825.879 kb on - strand at 5825.879 kb on - strand at 5825.879 kb on - strand at 5825.879 kb on - strand at 5825.879 kb on - strand at 5825.879 kb on - strand at 5825.879 kb on - strand at 5825.879 kb on - strand at 5825.879 kb on - strand at 5826.090 kb on + strand, within Psyr_4914 at 5826.090 kb on + strand, within Psyr_4914 at 5826.090 kb on + strand, within Psyr_4914 at 5826.090 kb on + strand, within Psyr_4914 at 5826.090 kb on + strand, within Psyr_4914 at 5826.090 kb on + strand, within Psyr_4914 at 5826.090 kb on + strand, within Psyr_4914 at 5826.091 kb on - strand, within Psyr_4914 at 5826.091 kb on - strand, within Psyr_4914 at 5826.091 kb on - strand, within Psyr_4914 at 5826.091 kb on - strand, within Psyr_4914 at 5826.091 kb on - strand, within Psyr_4914 at 5826.091 kb on - strand, within Psyr_4914 at 5826.091 kb on - strand, within Psyr_4914 at 5826.091 kb on - strand, within Psyr_4914 at 5826.091 kb on - strand, within Psyr_4914 at 5826.091 kb on - strand, within Psyr_4914 at 5826.091 kb on - strand, within Psyr_4914 at 5826.141 kb on + strand, within Psyr_4914 at 5826.142 kb on - strand, within Psyr_4914 at 5826.142 kb on - strand, within Psyr_4914 at 5826.142 kb on - strand, within Psyr_4914 at 5826.144 kb on + strand, within Psyr_4914
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Plumbagin 10 mM remove 5,823,445 + +0.9 5,823,445 + -1.9 5,823,533 + -3.4 5,823,533 + -1.0 5,823,533 + -1.1 5,823,533 + +1.2 5,823,533 + +1.5 5,823,533 + +2.2 5,823,533 + +1.6 5,823,533 + +0.3 5,823,533 + -0.8 5,823,533 + +1.0 5,823,534 - -0.4 5,823,534 - +0.5 5,823,534 - -0.4 5,823,534 - -2.4 5,823,534 - +0.5 5,823,534 - +0.4 5,823,534 - +2.7 5,823,534 - -0.6 5,823,534 - -0.9 5,823,534 - +0.3 5,823,534 - -0.7 5,823,564 + +1.1 5,823,565 - -3.9 5,823,565 - -1.4 5,823,565 - +0.2 5,823,689 + +0.2 5,823,689 + -0.2 5,823,689 + +0.7 5,823,690 - +0.4 5,823,690 - +0.2 5,823,690 - -1.3 5,823,721 + Psyr_4911 0.14 -3.2 5,824,036 + Psyr_4911 0.54 -3.5 5,824,036 + Psyr_4911 0.54 +0.2 5,824,036 + Psyr_4911 0.54 +0.6 5,824,036 + Psyr_4911 0.54 -2.1 5,824,036 + Psyr_4911 0.54 +0.3 5,824,036 + Psyr_4911 0.54 -0.8 5,824,036 + Psyr_4911 0.54 -3.5 5,824,036 + Psyr_4911 0.54 -0.6 5,824,037 - Psyr_4911 0.55 -1.8 5,824,037 - Psyr_4911 0.55 +0.0 5,824,037 - Psyr_4911 0.55 -0.4 5,824,037 - Psyr_4911 0.55 -2.0 5,824,041 - Psyr_4911 0.55 -0.4 5,824,062 + Psyr_4911 0.58 -0.6 5,824,112 + Psyr_4911 0.64 -0.5 5,824,270 + Psyr_4911 0.85 +0.1 5,824,271 - Psyr_4911 0.85 -2.5 5,824,271 - Psyr_4911 0.85 -0.8 5,824,333 + +0.7 5,824,333 + +1.0 5,824,334 - -3.0 5,824,334 - -0.8 5,824,334 - -1.8 5,824,334 - -2.8 5,824,334 - +0.2 5,824,541 + Psyr_4912 0.18 -2.4 5,824,552 + Psyr_4912 0.20 -0.4 5,824,721 - Psyr_4912 0.42 -2.9 5,824,723 + Psyr_4912 0.42 -1.0 5,824,724 - Psyr_4912 0.42 -0.7 5,824,888 + Psyr_4912 0.64 -1.7 5,824,888 + Psyr_4912 0.64 +0.6 5,824,888 + Psyr_4912 0.64 -1.7 5,824,888 + Psyr_4912 0.64 -1.0 5,824,889 - Psyr_4912 0.64 -0.9 5,824,889 - Psyr_4912 0.64 -1.9 5,824,957 + Psyr_4912 0.73 -1.4 5,824,957 + Psyr_4912 0.73 -1.2 5,824,957 + Psyr_4912 0.73 -3.6 5,824,957 + Psyr_4912 0.73 -0.7 5,824,957 + Psyr_4912 0.73 -2.1 5,824,957 + Psyr_4912 0.73 -0.8 5,824,957 + Psyr_4912 0.73 -0.4 5,824,957 + Psyr_4912 0.73 -2.0 5,824,957 + Psyr_4912 0.73 -3.2 5,824,957 + Psyr_4912 0.73 -1.9 5,824,957 + Psyr_4912 0.73 -3.1 5,824,957 + Psyr_4912 0.73 -4.0 5,824,958 - Psyr_4912 0.73 -1.7 5,824,958 - Psyr_4912 0.73 -2.5 5,824,958 - Psyr_4912 0.73 -0.9 5,824,958 - Psyr_4912 0.73 +0.7 5,825,122 + -0.2 5,825,122 + -0.8 5,825,122 + -4.7 5,825,122 + +1.2 5,825,123 - -1.6 5,825,123 - +0.2 5,825,123 - +1.2 5,825,123 - -2.5 5,825,123 - -1.4 5,825,123 - -1.4 5,825,123 - -2.9 5,825,123 - -0.2 5,825,123 - +0.0 5,825,123 - -1.5 5,825,123 - -1.4 5,825,143 + -2.2 5,825,143 + -1.7 5,825,143 + -3.7 5,825,143 + -0.9 5,825,143 + -0.2 5,825,143 + -1.7 5,825,143 + -0.8 5,825,143 + -2.5 5,825,144 - -3.7 5,825,144 - -1.8 5,825,144 - -2.5 5,825,144 - -0.9 5,825,144 - -1.8 5,825,392 - Psyr_4913 0.23 -0.4 5,825,392 - Psyr_4913 0.23 +0.4 5,825,395 + Psyr_4913 0.23 +0.4 5,825,395 + Psyr_4913 0.23 +4.4 5,825,395 + Psyr_4913 0.23 +1.1 5,825,395 + Psyr_4913 0.23 +2.7 5,825,395 + Psyr_4913 0.23 -0.3 5,825,396 - Psyr_4913 0.23 -0.8 5,825,396 - Psyr_4913 0.23 -0.4 5,825,396 - Psyr_4913 0.23 -0.7 5,825,446 + Psyr_4913 0.31 -3.6 5,825,446 + Psyr_4913 0.31 +0.4 5,825,446 + Psyr_4913 0.31 +0.0 5,825,821 + Psyr_4913 0.84 -0.8 5,825,821 + Psyr_4913 0.84 -0.8 5,825,821 + Psyr_4913 0.84 +0.8 5,825,821 + Psyr_4913 0.84 +0.2 5,825,821 + Psyr_4913 0.84 -0.4 5,825,821 + Psyr_4913 0.84 -0.3 5,825,821 + Psyr_4913 0.84 -1.1 5,825,821 + Psyr_4913 0.84 -0.1 5,825,822 - Psyr_4913 0.85 -0.1 5,825,822 - Psyr_4913 0.85 +0.4 5,825,822 - Psyr_4913 0.85 -0.6 5,825,822 - Psyr_4913 0.85 +1.6 5,825,822 - Psyr_4913 0.85 +2.0 5,825,822 - Psyr_4913 0.85 -0.8 5,825,822 - Psyr_4913 0.85 -0.8 5,825,822 - Psyr_4913 0.85 -0.7 5,825,822 - Psyr_4913 0.85 -1.1 5,825,822 - Psyr_4913 0.85 -1.4 5,825,822 - Psyr_4913 0.85 +3.8 5,825,822 - Psyr_4913 0.85 +0.9 5,825,842 + Psyr_4913 0.88 +1.4 5,825,842 + Psyr_4913 0.88 -0.4 5,825,842 + Psyr_4913 0.88 +0.2 5,825,842 + Psyr_4913 0.88 +0.5 5,825,842 + Psyr_4913 0.88 +2.2 5,825,842 + Psyr_4913 0.88 +1.1 5,825,842 + Psyr_4913 0.88 -1.8 5,825,843 - Psyr_4913 0.88 +1.0 5,825,843 - Psyr_4913 0.88 +0.8 5,825,843 - Psyr_4913 0.88 -1.4 5,825,843 - Psyr_4913 0.88 +0.0 5,825,878 + +1.8 5,825,878 + +0.0 5,825,878 + -0.5 5,825,878 + -1.0 5,825,878 + +0.3 5,825,878 + +0.3 5,825,878 + -1.1 5,825,878 + +0.0 5,825,878 + -1.9 5,825,878 + +1.7 5,825,878 + +0.6 5,825,878 + +0.3 5,825,878 + -0.2 5,825,878 + +0.3 5,825,879 - +0.2 5,825,879 - +0.2 5,825,879 - +0.8 5,825,879 - +1.2 5,825,879 - -1.2 5,825,879 - +3.1 5,825,879 - +1.2 5,825,879 - -0.0 5,825,879 - +1.1 5,825,879 - +0.7 5,825,879 - -2.1 5,826,090 + Psyr_4914 0.24 +2.4 5,826,090 + Psyr_4914 0.24 +0.4 5,826,090 + Psyr_4914 0.24 +0.5 5,826,090 + Psyr_4914 0.24 +2.8 5,826,090 + Psyr_4914 0.24 -2.1 5,826,090 + Psyr_4914 0.24 -1.1 5,826,090 + Psyr_4914 0.24 -2.3 5,826,091 - Psyr_4914 0.24 +1.4 5,826,091 - Psyr_4914 0.24 +2.2 5,826,091 - Psyr_4914 0.24 +0.5 5,826,091 - Psyr_4914 0.24 -1.5 5,826,091 - Psyr_4914 0.24 +0.4 5,826,091 - Psyr_4914 0.24 -0.6 5,826,091 - Psyr_4914 0.24 -2.6 5,826,091 - Psyr_4914 0.24 -0.8 5,826,091 - Psyr_4914 0.24 -0.8 5,826,091 - Psyr_4914 0.24 -0.9 5,826,091 - Psyr_4914 0.24 +0.2 5,826,141 + Psyr_4914 0.31 +1.3 5,826,142 - Psyr_4914 0.31 -0.2 5,826,142 - Psyr_4914 0.31 +0.1 5,826,142 - Psyr_4914 0.31 -1.3 5,826,144 + Psyr_4914 0.32 -0.8
Or see this region's nucleotide sequence