Experiment: KB with Plumbagin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4827 and Psyr_4828 are separated by 610 nucleotides
Psyr_4827: Psyr_4827 - BCCT transporter, at 5,727,414 to 5,729,408
_4827
Psyr_4828: Psyr_4828 - urocanate hydratase, at 5,730,019 to 5,731,716
_4828
Position (kb) 5727
5728
5729
5730 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 5726.441 kb on + strand at 5726.442 kb on - strand at 5726.499 kb on + strand at 5727.036 kb on + strand at 5727.036 kb on + strand at 5727.036 kb on + strand at 5727.321 kb on + strand at 5727.321 kb on + strand at 5727.387 kb on + strand at 5727.440 kb on + strand at 5727.440 kb on + strand at 5727.441 kb on - strand at 5727.441 kb on - strand at 5727.451 kb on + strand at 5727.452 kb on - strand at 5727.491 kb on - strand at 5727.491 kb on - strand at 5727.506 kb on - strand at 5727.548 kb on - strand at 5727.628 kb on + strand, within Psyr_4827 at 5727.628 kb on + strand, within Psyr_4827 at 5727.628 kb on + strand, within Psyr_4827 at 5727.629 kb on - strand, within Psyr_4827 at 5727.629 kb on - strand, within Psyr_4827 at 5727.629 kb on - strand, within Psyr_4827 at 5727.868 kb on + strand, within Psyr_4827 at 5727.868 kb on + strand, within Psyr_4827 at 5727.868 kb on + strand, within Psyr_4827 at 5727.868 kb on + strand, within Psyr_4827 at 5727.969 kb on + strand, within Psyr_4827 at 5727.970 kb on - strand, within Psyr_4827 at 5727.970 kb on - strand, within Psyr_4827 at 5728.195 kb on + strand, within Psyr_4827 at 5728.196 kb on - strand, within Psyr_4827 at 5728.196 kb on - strand, within Psyr_4827 at 5728.213 kb on + strand, within Psyr_4827 at 5728.214 kb on - strand, within Psyr_4827 at 5728.385 kb on + strand, within Psyr_4827 at 5728.386 kb on - strand, within Psyr_4827 at 5728.438 kb on + strand, within Psyr_4827 at 5728.438 kb on + strand, within Psyr_4827 at 5728.438 kb on + strand, within Psyr_4827 at 5728.439 kb on - strand, within Psyr_4827 at 5728.439 kb on - strand, within Psyr_4827 at 5728.439 kb on - strand, within Psyr_4827 at 5728.480 kb on + strand, within Psyr_4827 at 5728.480 kb on + strand, within Psyr_4827 at 5728.480 kb on + strand, within Psyr_4827 at 5728.480 kb on + strand, within Psyr_4827 at 5728.480 kb on + strand, within Psyr_4827 at 5728.480 kb on + strand, within Psyr_4827 at 5728.480 kb on + strand, within Psyr_4827 at 5728.480 kb on + strand, within Psyr_4827 at 5728.481 kb on - strand, within Psyr_4827 at 5728.481 kb on - strand, within Psyr_4827 at 5728.481 kb on - strand, within Psyr_4827 at 5728.481 kb on - strand, within Psyr_4827 at 5728.481 kb on - strand, within Psyr_4827 at 5728.481 kb on - strand, within Psyr_4827 at 5728.481 kb on - strand, within Psyr_4827 at 5728.486 kb on + strand, within Psyr_4827 at 5728.486 kb on + strand, within Psyr_4827 at 5728.486 kb on + strand, within Psyr_4827 at 5728.486 kb on + strand, within Psyr_4827 at 5728.486 kb on + strand, within Psyr_4827 at 5728.486 kb on + strand, within Psyr_4827 at 5728.486 kb on + strand, within Psyr_4827 at 5728.486 kb on + strand, within Psyr_4827 at 5728.486 kb on + strand, within Psyr_4827 at 5728.486 kb on + strand, within Psyr_4827 at 5728.486 kb on + strand, within Psyr_4827 at 5728.486 kb on + strand, within Psyr_4827 at 5728.486 kb on + strand, within Psyr_4827 at 5728.487 kb on - strand, within Psyr_4827 at 5728.487 kb on - strand, within Psyr_4827 at 5728.487 kb on - strand, within Psyr_4827 at 5728.487 kb on - strand, within Psyr_4827 at 5728.487 kb on - strand, within Psyr_4827 at 5728.487 kb on - strand, within Psyr_4827 at 5728.487 kb on - strand, within Psyr_4827 at 5728.487 kb on - strand, within Psyr_4827 at 5728.487 kb on - strand, within Psyr_4827 at 5728.613 kb on + strand, within Psyr_4827 at 5728.613 kb on + strand, within Psyr_4827 at 5728.613 kb on + strand, within Psyr_4827 at 5728.613 kb on + strand, within Psyr_4827 at 5728.613 kb on + strand, within Psyr_4827 at 5728.613 kb on + strand, within Psyr_4827 at 5728.613 kb on + strand, within Psyr_4827 at 5728.613 kb on + strand, within Psyr_4827 at 5728.613 kb on + strand, within Psyr_4827 at 5728.613 kb on + strand, within Psyr_4827 at 5728.614 kb on - strand, within Psyr_4827 at 5728.614 kb on - strand, within Psyr_4827 at 5728.614 kb on - strand, within Psyr_4827 at 5728.614 kb on - strand, within Psyr_4827 at 5728.614 kb on - strand, within Psyr_4827 at 5728.614 kb on - strand, within Psyr_4827 at 5728.738 kb on + strand, within Psyr_4827 at 5728.738 kb on + strand, within Psyr_4827 at 5728.857 kb on - strand, within Psyr_4827 at 5729.128 kb on + strand, within Psyr_4827 at 5729.212 kb on + strand at 5729.212 kb on + strand at 5729.233 kb on + strand at 5729.233 kb on + strand at 5729.233 kb on + strand at 5729.233 kb on + strand at 5729.233 kb on + strand at 5729.233 kb on + strand at 5729.233 kb on + strand at 5729.233 kb on + strand at 5729.233 kb on + strand at 5729.233 kb on + strand at 5729.233 kb on + strand at 5729.233 kb on + strand at 5729.233 kb on + strand at 5729.233 kb on + strand at 5729.233 kb on + strand at 5729.233 kb on + strand at 5729.233 kb on + strand at 5729.233 kb on + strand at 5729.233 kb on + strand at 5729.233 kb on + strand at 5729.233 kb on + strand at 5729.233 kb on + strand at 5729.233 kb on + strand at 5729.233 kb on + strand at 5729.234 kb on - strand at 5729.234 kb on - strand at 5729.234 kb on - strand at 5729.234 kb on - strand at 5729.234 kb on - strand at 5729.234 kb on - strand at 5729.234 kb on - strand at 5729.234 kb on - strand at 5729.234 kb on - strand at 5729.234 kb on - strand at 5729.234 kb on - strand at 5729.234 kb on - strand at 5729.234 kb on - strand at 5729.234 kb on - strand at 5729.234 kb on - strand at 5729.234 kb on - strand at 5729.234 kb on - strand at 5729.236 kb on + strand at 5729.236 kb on + strand at 5729.237 kb on - strand at 5729.333 kb on + strand at 5729.334 kb on - strand at 5729.334 kb on - strand at 5729.350 kb on + strand at 5729.351 kb on - strand at 5729.431 kb on + strand at 5729.431 kb on + strand at 5729.432 kb on - strand at 5729.466 kb on - strand at 5729.466 kb on - strand at 5729.901 kb on - strand at 5729.910 kb on + strand at 5730.030 kb on + strand at 5730.030 kb on + strand at 5730.031 kb on - strand at 5730.031 kb on - strand at 5730.196 kb on + strand, within Psyr_4828 at 5730.235 kb on + strand, within Psyr_4828 at 5730.290 kb on + strand, within Psyr_4828 at 5730.290 kb on + strand, within Psyr_4828 at 5730.290 kb on + strand, within Psyr_4828 at 5730.291 kb on - strand, within Psyr_4828
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Plumbagin 10 mM remove 5,726,441 + +1.4 5,726,442 - +0.2 5,726,499 + -1.5 5,727,036 + +1.3 5,727,036 + +1.2 5,727,036 + +0.5 5,727,321 + +0.6 5,727,321 + +0.6 5,727,387 + -0.8 5,727,440 + +2.8 5,727,440 + -1.0 5,727,441 - -0.6 5,727,441 - +1.0 5,727,451 + +1.1 5,727,452 - +1.6 5,727,491 - +0.9 5,727,491 - +0.1 5,727,506 - -1.4 5,727,548 - -0.9 5,727,628 + Psyr_4827 0.11 +0.3 5,727,628 + Psyr_4827 0.11 -2.2 5,727,628 + Psyr_4827 0.11 +0.7 5,727,629 - Psyr_4827 0.11 -2.7 5,727,629 - Psyr_4827 0.11 -0.6 5,727,629 - Psyr_4827 0.11 -1.2 5,727,868 + Psyr_4827 0.23 +1.2 5,727,868 + Psyr_4827 0.23 +0.0 5,727,868 + Psyr_4827 0.23 -0.5 5,727,868 + Psyr_4827 0.23 -0.1 5,727,969 + Psyr_4827 0.28 -2.2 5,727,970 - Psyr_4827 0.28 -0.5 5,727,970 - Psyr_4827 0.28 -0.6 5,728,195 + Psyr_4827 0.39 +0.5 5,728,196 - Psyr_4827 0.39 +0.3 5,728,196 - Psyr_4827 0.39 -1.3 5,728,213 + Psyr_4827 0.40 -1.4 5,728,214 - Psyr_4827 0.40 -1.5 5,728,385 + Psyr_4827 0.49 -4.1 5,728,386 - Psyr_4827 0.49 +2.1 5,728,438 + Psyr_4827 0.51 -0.4 5,728,438 + Psyr_4827 0.51 -0.3 5,728,438 + Psyr_4827 0.51 +0.2 5,728,439 - Psyr_4827 0.51 +0.1 5,728,439 - Psyr_4827 0.51 -2.2 5,728,439 - Psyr_4827 0.51 +0.5 5,728,480 + Psyr_4827 0.53 +1.6 5,728,480 + Psyr_4827 0.53 +0.7 5,728,480 + Psyr_4827 0.53 -0.1 5,728,480 + Psyr_4827 0.53 -2.1 5,728,480 + Psyr_4827 0.53 -1.6 5,728,480 + Psyr_4827 0.53 +0.5 5,728,480 + Psyr_4827 0.53 -3.6 5,728,480 + Psyr_4827 0.53 -2.6 5,728,481 - Psyr_4827 0.53 +2.2 5,728,481 - Psyr_4827 0.53 +0.2 5,728,481 - Psyr_4827 0.53 +0.2 5,728,481 - Psyr_4827 0.53 -0.6 5,728,481 - Psyr_4827 0.53 -4.0 5,728,481 - Psyr_4827 0.53 +0.7 5,728,481 - Psyr_4827 0.53 +1.8 5,728,486 + Psyr_4827 0.54 +0.5 5,728,486 + Psyr_4827 0.54 -1.4 5,728,486 + Psyr_4827 0.54 -0.5 5,728,486 + Psyr_4827 0.54 -1.0 5,728,486 + Psyr_4827 0.54 -2.1 5,728,486 + Psyr_4827 0.54 -1.5 5,728,486 + Psyr_4827 0.54 -2.0 5,728,486 + Psyr_4827 0.54 -2.2 5,728,486 + Psyr_4827 0.54 -1.2 5,728,486 + Psyr_4827 0.54 -0.4 5,728,486 + Psyr_4827 0.54 +1.2 5,728,486 + Psyr_4827 0.54 +0.5 5,728,486 + Psyr_4827 0.54 +0.8 5,728,487 - Psyr_4827 0.54 -4.2 5,728,487 - Psyr_4827 0.54 +0.2 5,728,487 - Psyr_4827 0.54 -0.4 5,728,487 - Psyr_4827 0.54 +0.6 5,728,487 - Psyr_4827 0.54 +0.2 5,728,487 - Psyr_4827 0.54 +1.2 5,728,487 - Psyr_4827 0.54 +0.3 5,728,487 - Psyr_4827 0.54 -1.6 5,728,487 - Psyr_4827 0.54 -0.3 5,728,613 + Psyr_4827 0.60 -0.4 5,728,613 + Psyr_4827 0.60 -0.4 5,728,613 + Psyr_4827 0.60 +0.9 5,728,613 + Psyr_4827 0.60 +0.7 5,728,613 + Psyr_4827 0.60 +0.0 5,728,613 + Psyr_4827 0.60 +0.6 5,728,613 + Psyr_4827 0.60 +0.2 5,728,613 + Psyr_4827 0.60 +0.3 5,728,613 + Psyr_4827 0.60 -0.1 5,728,613 + Psyr_4827 0.60 -1.0 5,728,614 - Psyr_4827 0.60 +1.1 5,728,614 - Psyr_4827 0.60 +0.1 5,728,614 - Psyr_4827 0.60 -2.1 5,728,614 - Psyr_4827 0.60 -0.7 5,728,614 - Psyr_4827 0.60 +0.9 5,728,614 - Psyr_4827 0.60 -0.8 5,728,738 + Psyr_4827 0.66 -1.7 5,728,738 + Psyr_4827 0.66 +2.3 5,728,857 - Psyr_4827 0.72 +0.2 5,729,128 + Psyr_4827 0.86 -0.1 5,729,212 + -2.5 5,729,212 + -2.7 5,729,233 + +0.6 5,729,233 + -0.2 5,729,233 + +0.8 5,729,233 + -2.7 5,729,233 + -1.6 5,729,233 + -0.1 5,729,233 + -0.1 5,729,233 + +0.2 5,729,233 + -0.6 5,729,233 + -2.9 5,729,233 + +0.4 5,729,233 + +2.1 5,729,233 + +1.6 5,729,233 + +0.8 5,729,233 + -1.8 5,729,233 + +0.6 5,729,233 + -0.5 5,729,233 + -0.0 5,729,233 + -2.4 5,729,233 + +0.3 5,729,233 + +0.2 5,729,233 + -1.6 5,729,233 + -2.3 5,729,233 + -0.8 5,729,234 - -0.9 5,729,234 - +1.2 5,729,234 - -3.1 5,729,234 - -2.9 5,729,234 - +0.2 5,729,234 - -2.9 5,729,234 - +0.1 5,729,234 - -2.4 5,729,234 - -1.2 5,729,234 - -0.6 5,729,234 - -0.3 5,729,234 - -0.8 5,729,234 - -0.9 5,729,234 - -0.0 5,729,234 - -3.8 5,729,234 - +0.4 5,729,234 - -1.7 5,729,236 + -1.1 5,729,236 + -0.6 5,729,237 - +0.5 5,729,333 + -0.9 5,729,334 - -1.0 5,729,334 - +0.1 5,729,350 + -1.1 5,729,351 - +4.0 5,729,431 + +0.6 5,729,431 + +1.0 5,729,432 - -0.4 5,729,466 - +2.1 5,729,466 - +1.2 5,729,901 - -0.1 5,729,910 + -1.4 5,730,030 + -0.5 5,730,030 + -0.2 5,730,031 - -0.8 5,730,031 - +1.5 5,730,196 + Psyr_4828 0.10 +0.2 5,730,235 + Psyr_4828 0.13 -1.8 5,730,290 + Psyr_4828 0.16 -1.4 5,730,290 + Psyr_4828 0.16 +0.6 5,730,290 + Psyr_4828 0.16 +1.2 5,730,291 - Psyr_4828 0.16 -0.1
Or see this region's nucleotide sequence