Experiment: KB with Plumbagin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4331 and Psyr_4332 are separated by 274 nucleotides Psyr_4332 and Psyr_4333 are separated by 25 nucleotides Psyr_4333 and Psyr_4334 are separated by 6 nucleotides
Psyr_4331: Psyr_4331 - galactose 1-dehydrogenase, at 5,182,992 to 5,183,918
_4331
Psyr_4332: Psyr_4332 - conserved hypothetical protein, at 5,184,193 to 5,184,612
_4332
Psyr_4333: Psyr_4333 - Cation efflux protein, at 5,184,638 to 5,185,531
_4333
Psyr_4334: Psyr_4334 - conserved hypothetical protein, at 5,185,538 to 5,186,704
_4334
Position (kb) 5184
5185 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 5183.720 kb on + strand, within Psyr_4331 at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.939 kb on + strand at 5183.939 kb on + strand at 5183.939 kb on + strand at 5183.939 kb on + strand at 5183.939 kb on + strand at 5183.959 kb on - strand at 5183.983 kb on + strand at 5184.098 kb on + strand at 5184.099 kb on - strand at 5184.133 kb on + strand at 5184.134 kb on - strand at 5184.140 kb on - strand at 5184.161 kb on + strand at 5184.161 kb on + strand at 5184.161 kb on + strand at 5184.161 kb on + strand at 5184.161 kb on + strand at 5184.161 kb on + strand at 5184.161 kb on + strand at 5184.161 kb on + strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.164 kb on - strand at 5184.164 kb on - strand at 5184.164 kb on - strand at 5184.164 kb on - strand at 5184.164 kb on - strand at 5184.164 kb on - strand at 5184.164 kb on - strand at 5184.164 kb on - strand at 5184.164 kb on - strand at 5184.164 kb on - strand at 5184.164 kb on - strand at 5184.164 kb on - strand at 5184.274 kb on + strand, within Psyr_4332 at 5184.274 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.355 kb on - strand, within Psyr_4332 at 5184.406 kb on + strand, within Psyr_4332 at 5184.406 kb on + strand, within Psyr_4332 at 5184.406 kb on + strand, within Psyr_4332 at 5184.407 kb on - strand, within Psyr_4332 at 5184.407 kb on - strand, within Psyr_4332 at 5184.407 kb on - strand, within Psyr_4332 at 5184.561 kb on + strand, within Psyr_4332 at 5184.561 kb on + strand, within Psyr_4332 at 5184.562 kb on - strand, within Psyr_4332 at 5184.828 kb on - strand, within Psyr_4333 at 5184.828 kb on - strand, within Psyr_4333 at 5184.860 kb on + strand, within Psyr_4333 at 5185.158 kb on - strand, within Psyr_4333 at 5185.158 kb on - strand, within Psyr_4333 at 5185.185 kb on - strand, within Psyr_4333 at 5185.185 kb on - strand, within Psyr_4333 at 5185.208 kb on + strand, within Psyr_4333 at 5185.208 kb on + strand, within Psyr_4333 at 5185.208 kb on + strand, within Psyr_4333 at 5185.208 kb on + strand, within Psyr_4333 at 5185.209 kb on - strand, within Psyr_4333 at 5185.209 kb on - strand, within Psyr_4333 at 5185.209 kb on - strand, within Psyr_4333 at 5185.210 kb on + strand, within Psyr_4333 at 5185.210 kb on + strand, within Psyr_4333 at 5185.210 kb on + strand, within Psyr_4333 at 5185.349 kb on - strand, within Psyr_4333 at 5185.551 kb on + strand at 5185.591 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Plumbagin 10 mM remove 5,183,720 + Psyr_4331 0.79 -0.1 5,183,918 + +1.0 5,183,918 + -1.2 5,183,918 + -1.5 5,183,918 + +0.1 5,183,918 + -1.0 5,183,918 + -0.3 5,183,918 + -0.7 5,183,918 + -1.2 5,183,918 + +0.5 5,183,918 + +1.4 5,183,918 + +0.3 5,183,918 + -0.1 5,183,918 + +0.5 5,183,918 + -0.6 5,183,918 + +0.5 5,183,918 + +0.1 5,183,918 + +0.5 5,183,918 + +0.0 5,183,918 + -0.1 5,183,918 + +1.1 5,183,918 + -0.9 5,183,919 - -0.3 5,183,919 - -0.3 5,183,919 - -2.0 5,183,919 - -2.1 5,183,919 - -1.0 5,183,919 - +1.1 5,183,919 - -0.2 5,183,919 - -4.0 5,183,919 - +0.7 5,183,919 - -1.2 5,183,919 - +1.0 5,183,919 - -0.2 5,183,919 - +1.8 5,183,919 - -1.4 5,183,919 - -1.4 5,183,919 - +0.3 5,183,919 - -1.9 5,183,919 - -1.2 5,183,919 - +0.2 5,183,919 - -0.3 5,183,919 - -1.4 5,183,919 - +1.1 5,183,919 - -0.0 5,183,939 + -1.3 5,183,939 + +0.7 5,183,939 + +0.1 5,183,939 + -1.4 5,183,939 + +2.7 5,183,959 - -0.3 5,183,983 + -0.2 5,184,098 + +1.0 5,184,099 - +0.6 5,184,133 + -2.3 5,184,134 - +0.6 5,184,140 - -2.3 5,184,161 + +2.0 5,184,161 + +0.3 5,184,161 + +0.6 5,184,161 + -1.2 5,184,161 + +0.6 5,184,161 + +2.7 5,184,161 + +1.9 5,184,161 + +0.8 5,184,162 - +0.5 5,184,162 - +0.7 5,184,162 - +0.8 5,184,162 - +1.3 5,184,162 - +0.1 5,184,162 - +0.9 5,184,162 - -1.5 5,184,162 - -1.8 5,184,162 - -0.7 5,184,162 - -0.8 5,184,162 - +0.5 5,184,162 - +2.1 5,184,162 - -3.7 5,184,162 - +0.8 5,184,162 - +4.6 5,184,162 - +1.1 5,184,162 - -1.8 5,184,162 - -1.4 5,184,162 - +1.0 5,184,162 - +2.6 5,184,163 + +0.7 5,184,163 + +1.1 5,184,163 + -0.3 5,184,163 + +1.0 5,184,163 + -0.1 5,184,163 + -1.9 5,184,163 + -1.0 5,184,163 + -2.4 5,184,163 + +0.7 5,184,163 + -0.0 5,184,163 + -0.4 5,184,163 + +1.5 5,184,163 + +0.1 5,184,163 + -0.8 5,184,163 + +0.0 5,184,164 - +2.1 5,184,164 - -0.3 5,184,164 - -0.9 5,184,164 - -1.4 5,184,164 - +0.0 5,184,164 - -1.9 5,184,164 - +0.0 5,184,164 - +0.0 5,184,164 - +2.7 5,184,164 - -0.8 5,184,164 - -0.5 5,184,164 - -2.7 5,184,274 + Psyr_4332 0.19 +0.1 5,184,274 + Psyr_4332 0.19 +0.6 5,184,352 + Psyr_4332 0.38 +0.7 5,184,352 + Psyr_4332 0.38 +0.4 5,184,352 + Psyr_4332 0.38 -0.6 5,184,352 + Psyr_4332 0.38 -0.9 5,184,352 + Psyr_4332 0.38 -0.9 5,184,352 + Psyr_4332 0.38 +0.3 5,184,352 + Psyr_4332 0.38 -1.4 5,184,352 + Psyr_4332 0.38 +1.5 5,184,352 + Psyr_4332 0.38 +0.9 5,184,352 + Psyr_4332 0.38 -0.4 5,184,352 + Psyr_4332 0.38 -2.7 5,184,352 + Psyr_4332 0.38 -0.1 5,184,352 + Psyr_4332 0.38 +0.1 5,184,352 + Psyr_4332 0.38 -0.9 5,184,352 + Psyr_4332 0.38 -0.4 5,184,353 - Psyr_4332 0.38 -1.2 5,184,353 - Psyr_4332 0.38 -2.7 5,184,353 - Psyr_4332 0.38 -0.4 5,184,353 - Psyr_4332 0.38 -1.9 5,184,353 - Psyr_4332 0.38 +0.1 5,184,353 - Psyr_4332 0.38 -0.9 5,184,353 - Psyr_4332 0.38 +0.0 5,184,353 - Psyr_4332 0.38 -0.0 5,184,353 - Psyr_4332 0.38 -0.9 5,184,353 - Psyr_4332 0.38 -0.3 5,184,353 - Psyr_4332 0.38 +0.1 5,184,353 - Psyr_4332 0.38 +0.6 5,184,353 - Psyr_4332 0.38 -0.1 5,184,355 - Psyr_4332 0.39 -1.7 5,184,406 + Psyr_4332 0.51 -1.4 5,184,406 + Psyr_4332 0.51 -2.4 5,184,406 + Psyr_4332 0.51 -0.0 5,184,407 - Psyr_4332 0.51 +3.5 5,184,407 - Psyr_4332 0.51 +0.7 5,184,407 - Psyr_4332 0.51 +3.1 5,184,561 + Psyr_4332 0.88 +0.1 5,184,561 + Psyr_4332 0.88 +0.3 5,184,562 - Psyr_4332 0.88 +0.4 5,184,828 - Psyr_4333 0.21 -2.7 5,184,828 - Psyr_4333 0.21 -1.0 5,184,860 + Psyr_4333 0.25 +1.1 5,185,158 - Psyr_4333 0.58 -0.7 5,185,158 - Psyr_4333 0.58 -0.7 5,185,185 - Psyr_4333 0.61 -0.8 5,185,185 - Psyr_4333 0.61 -0.7 5,185,208 + Psyr_4333 0.64 +1.4 5,185,208 + Psyr_4333 0.64 +1.8 5,185,208 + Psyr_4333 0.64 -0.5 5,185,208 + Psyr_4333 0.64 +1.5 5,185,209 - Psyr_4333 0.64 -3.2 5,185,209 - Psyr_4333 0.64 +0.1 5,185,209 - Psyr_4333 0.64 +1.5 5,185,210 + Psyr_4333 0.64 -0.3 5,185,210 + Psyr_4333 0.64 +0.2 5,185,210 + Psyr_4333 0.64 -1.8 5,185,349 - Psyr_4333 0.80 +2.0 5,185,551 + +1.1 5,185,591 - -0.8
Or see this region's nucleotide sequence